################################### Hits in At1g15790_2 with E < 0.01 ######SEQUENCE NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA INQEDYLGKISLKMRTM ######COMMAND blastpgp -i At1g15790_2 -F T -j 10 -a 4 -h 0.005 -e 10 -d nr ######HIT_SUMMARY HSP__Pos in Q_________________Subject__________________from species_______Pos in S___E-value___ 1 1 .. 77 NP_173031.2| expressed protein [Arabidop Arabidopsis tha 103 .. 179 E= 9.0e-35 2 7 .. 77 NP_173031.2| expressed protein [Arabidop Arabidopsis tha 4 .. 74 E= 4.0e-10 1 2 .. 77 NP_173030.1| expressed protein [Arabidop Arabidopsis tha 14 .. 89 E= 1.0e-19 1 2 .. 77 B86292 F7H2.12 protein - Arabidopsis tha Arabidopsis tha 14 .. 120 E= 6.0e-15 1 2 .. 77 AAN62354.1|AF506028_23 CTV.22 [Poncirus Poncirus trifol 29 .. 104 E= 1.0e-14 1 5 .. 77 AAN62347.1|AF506028_14 CTV.20 [Poncirus Poncirus trifol 12 .. 84 E= 2.0e-14 1 3 .. 77 BAC56002.1| P0705A05.20 [Oryza sativa (j Oryza sativa (j 30 .. 104 E= 3.0e-13 1 9 .. 72 BAC45101.1| OJ1705_C03.23 [Oryza sativa Oryza sativa (j 12 .. 75 E= 8.0e-08 1 10 .. 73 T18235 transcription activator GAL11 hom Candida albican 23 .. 86 E= 1.0e-03 1 27 .. 63 BAC45102.1| OJ1705_C03.24 [Oryza sativa Oryza sativa (j 39 .. 75 E= 1.0e-05 1 9 .. 64 NP_178842.1| hypothetical protein [Arabi Arabidopsis tha 24 .. 76 E= 4.0e-04 1 3 .. 66 T13828 CREB-binding protein homolog - fr Drosophila mela 936 ..1001 E= 3.0e-03 1 3 .. 66 NP_524642.2| nejire CG15319-PB [Drosophi Drosophila mela 936 ..1001 E= 3.0e-03 1 3 .. 66 XP_311133.1| ENSANGP00000004748 [Anophel Anopheles gambi 738 .. 803 E= 3.0e-09 1 3 .. 66 AAL54859.1| CREB-binding protein [Aplysi Aplysia califor 498 .. 563 E= 4.0e-08 1 7 .. 66 NP_499160.1| CBP/p300 homolog CBP-1 (cbp Caenorhabditis 595 .. 656 E= 7.0e-07 1 7 .. 66 S60123 hypothetical protein R10E11.1 - C Caenorhabditis 595 .. 656 E= 7.0e-07 1 7 .. 66 NP_499161.1| CBP/p300 homolog CBP-1 (cbp Caenorhabditis 584 .. 645 E= 7.0e-07 1 10 .. 66 AAH44677.1| Similar to CREB binding prot Xenopus laevis 581 .. 639 E= 7.0e-07 1 8 .. 66 1923401A protein CBP -------- 589 .. 649 E= 8.0e-07 1 8 .. 66 AAB31182.1| p300=transcription coactivat mice, Peptide P 570 .. 630 E= 1.0e-06 1 8 .. 66 XP_283295.1| similar to E1A-associated p Mus musculus 570 .. 630 E= 1.0e-06 1 8 .. 66 NP_001420.1| E1A binding protein p300; E Homo sapiens 569 .. 629 E= 1.0e-06 1 8 .. 66 XP_235770.1| similar to E1A-associated p Rattus norvegic 198 .. 258 E= 2.0e-06 1 8 .. 66 XP_235502.1| similar to E1A-associated p Rattus norvegic 198 .. 258 E= 2.0e-06 1 8 .. 66 AAH53889.1| Unknown (protein for IMAGE:6 Homo sapiens 569 .. 629 E= 2.0e-06 1 8 .. 66 S39162 transcription coactivator CREB-bi human 590 .. 650 E= 2.0e-06 1 8 .. 66 NP_004371.1| CREB binding protein [Homo Homo sapiens 590 .. 650 E= 2.0e-06 1 8 .. 66 AAC08447.1| CBP [Homo sapiens] Homo sapiens 324 .. 384 E= 2.0e-06 1 8 .. 66 AAC51331.2| CREB-binding protein [Homo s Homo sapiens 590 .. 650 E= 2.0e-06 1 8 .. 66 P45481|CBP_MOUSE CREB-binding protein pi Mus sp. 589 .. 649 E= 2.0e-06 1 8 .. 66 AAL87531.1| CREB-binding protein [Mus mu Mus musculus 583 .. 643 E= 2.0e-06 1 8 .. 66 1KDX|A Chain A, Kix Domain Of Mouse Cbp -------- 4 .. 64 E= 1.0e-04 1 7 .. 66 S41033 hypothetical protein K03H1.10 - C Caenorhabditis 160 .. 219 E= 1.0e-04 1 7 .. 66 NP_499201.1| TAZ zinc finger and KIX dom Caenorhabditis 166 .. 225 E= 1.0e-04 1 5 .. 77 E89403 protein C06H5.4 [imported] - Caen imported 173 .. 245 E= 2.0e-03 1 5 .. 77 NP_507512.1| Predicted CDS, putative cyt Caenorhabditis 52 .. 124 E= 3.0e-03 1 13 .. 68 NP_586100.1| MADS domain [Encephalitozoo Encephalitozoon 1 .. 55 E= 6.0e-03 ***** 38 Number of hits for At1g15790_2 below with E-value < 0.01 : 38 ######RAW OUTPUT BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= At1g15790_2 (77 letters) Database: /local/data/sequences/fasta/nr 1,459,938 sequences; 468,778,868 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value ref|NP_173031.2| expressed protein [Arabidopsis thaliana] >gi|25... 146 9e-35 ref|NP_173030.1| expressed protein [Arabidopsis thaliana] 96 1e-19 pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g... 80 6e-15 gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] 79 1e-14 gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 79 2e-14 dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro... 75 3e-13 dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-g... 40 0.011 pir||T18235 transcription activator GAL11 homolog - yeast (Candi... 37 0.10 >ref|NP_173031.2| expressed protein [Arabidopsis thaliana] pir||C86292 F7H2.13 protein - Arabidopsis thaliana gb|AAF82149.1|AC034256_13 ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene. [Arabidopsis thaliana] gb|AAG48787.1|AF332424_1 unknown protein [Arabidopsis thaliana] Length = 179 Score = 146 bits (368), Expect = 9e-35 Identities = 77/77 (100%), Positives = 77/77 (100%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 60 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA Sbjct: 103 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 162 Query: 61 INQEDYLGKISLKMRTM 77 INQEDYLGKISLKMRTM Sbjct: 163 INQEDYLGKISLKMRTM 179 Score = 64.3 bits (155), Expect = 4e-10 Identities = 34/71 (47%), Positives = 47/71 (65%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDY 66 TGDWRTQ P SR + +N +++T K +P EG +EL +IAV EE +FN+A NQ +Y Sbjct: 4 TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63 Query: 67 LGKISLKMRTM 77 L +I +KM M Sbjct: 64 LRQICMKMLNM 74 >ref|NP_173030.1| expressed protein [Arabidopsis thaliana] Length = 1335 Score = 95.9 bits (237), Expect = 1e-19 Identities = 49/76 (64%), Positives = 60/76 (78%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQEDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQTDYLRKISMKMLTM 89 >pir||B86292 F7H2.12 protein - Arabidopsis thaliana gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana] Length = 1366 Score = 80.5 bits (197), Expect = 6e-15 Identities = 49/107 (45%), Positives = 60/107 (55%), Gaps = 31/107 (28%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQE-------------------------------DYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTM 120 >gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] Length = 1405 Score = 79.3 bits (194), Expect = 1e-14 Identities = 40/76 (52%), Positives = 57/76 (74%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 E ++TGDWRTQ DSRQ+ +N ++DTLK+ +P SG++G++EL +IA EE I+ +A Sbjct: 29 ESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAAS 88 Query: 62 NQEDYLGKISLKMRTM 77 +Q DYL KISLKM +M Sbjct: 89 SQSDYLRKISLKMLSM 104 >gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] Length = 3148 Score = 78.6 bits (192), Expect = 2e-14 Identities = 39/73 (53%), Positives = 51/73 (69%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 ++ DWR DSRQ+ +N ++DTLK+ +P SG EG++EL RIA EE IF SA +Q Sbjct: 12 LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQS 71 Query: 65 DYLGKISLKMRTM 77 DYL KISLKM +M Sbjct: 72 DYLRKISLKMLSM 84 >dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)] Length = 1359 Score = 74.7 bits (182), Expect = 3e-13 Identities = 38/75 (50%), Positives = 54/75 (71%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 PA+ GDWR+Q ++R + +N ++DTLKK +P S EG++EL +IAV EE I+ +A + Sbjct: 30 PALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATS 89 Query: 63 QEDYLGKISLKMRTM 77 Q DYL KISLKM +M Sbjct: 90 QSDYLRKISLKMLSM 104 >dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)] Length = 414 Score = 39.7 bits (91), Expect = 0.011 Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 DWRT+ QD R + +L +L+ + + + +L ++A +EE I+ AI+ DYL Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71 Query: 69 KISL 72 +ISL Sbjct: 72 RISL 75 >pir||T18235 transcription activator GAL11 homolog - yeast (Candida albicans) emb|CAA21993.1| possible regulatory protein [Candida albicans] Length = 1145 Score = 36.6 bits (83), Expect = 0.10 Identities = 17/68 (25%), Positives = 37/68 (54%) Query: 10 WRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGK 69 WR + RQK + +++TL ++ + + L ++A E+L++ + ++EDYL Sbjct: 23 WRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLRA 82 Query: 70 ISLKMRTM 77 I +K+ + Sbjct: 83 IKMKVHQL 90 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_173030.1| expressed protein [Arabidopsis thaliana] 145 2e-34 gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] 140 3e-33 gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 140 5e-33 dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro... 135 2e-31 ref|NP_173031.2| expressed protein [Arabidopsis thaliana] >gi|25... 130 4e-30 pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g... 129 1e-29 Sequences not found previously or not previously below threshold: dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-g... 57 8e-08 pir||T18235 transcription activator GAL11 homolog - yeast (Candi... 43 0.001 ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] >gi... 40 0.013 ref|NP_217566.1| hypothetical protein Rv3050c [Mycobacterium tub... 35 0.40 pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans 33 0.86 ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, ne... 33 0.95 ref|NP_774610.1| oxidoreductase [Bradyrhizobium japonicum] >gi|2... 33 1.0 ref|NP_248731.1| probable hemagglutinin [Pseudomonas aeruginosa ... 31 3.2 ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] >gi|1906... 31 4.6 >ref|NP_173030.1| expressed protein [Arabidopsis thaliana] Length = 1335 Score = 145 bits (365), Expect = 2e-34 Identities = 49/76 (64%), Positives = 60/76 (78%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQEDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQTDYLRKISMKMLTM 89 >gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] Length = 1405 Score = 140 bits (354), Expect = 3e-33 Identities = 40/76 (52%), Positives = 57/76 (74%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 E ++TGDWRTQ DSRQ+ +N ++DTLK+ +P SG++G++EL +IA EE I+ +A Sbjct: 29 ESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAAS 88 Query: 62 NQEDYLGKISLKMRTM 77 +Q DYL KISLKM +M Sbjct: 89 SQSDYLRKISLKMLSM 104 >gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] Length = 3148 Score = 140 bits (353), Expect = 5e-33 Identities = 39/73 (53%), Positives = 51/73 (69%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 ++ DWR DSRQ+ +N ++DTLK+ +P SG EG++EL RIA EE IF SA +Q Sbjct: 12 LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQS 71 Query: 65 DYLGKISLKMRTM 77 DYL KISLKM +M Sbjct: 72 DYLRKISLKMLSM 84 >dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)] Length = 1359 Score = 135 bits (340), Expect = 2e-31 Identities = 38/75 (50%), Positives = 54/75 (71%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 PA+ GDWR+Q ++R + +N ++DTLKK +P S EG++EL +IAV EE I+ +A + Sbjct: 30 PALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATS 89 Query: 63 QEDYLGKISLKMRTM 77 Q DYL KISLKM +M Sbjct: 90 QSDYLRKISLKMLSM 104 >ref|NP_173031.2| expressed protein [Arabidopsis thaliana] pir||C86292 F7H2.13 protein - Arabidopsis thaliana gb|AAF82149.1|AC034256_13 ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene. [Arabidopsis thaliana] gb|AAG48787.1|AF332424_1 unknown protein [Arabidopsis thaliana] Length = 179 Score = 130 bits (328), Expect = 4e-30 Identities = 77/77 (100%), Positives = 77/77 (100%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 60 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA Sbjct: 103 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 162 Query: 61 INQEDYLGKISLKMRTM 77 INQEDYLGKISLKMRTM Sbjct: 163 INQEDYLGKISLKMRTM 179 Score = 101 bits (252), Expect = 3e-21 Identities = 34/71 (47%), Positives = 47/71 (65%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDY 66 TGDWRTQ P SR + +N +++T K +P EG +EL +IAV EE +FN+A NQ +Y Sbjct: 4 TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63 Query: 67 LGKISLKMRTM 77 L +I +KM M Sbjct: 64 LRQICMKMLNM 74 >pir||B86292 F7H2.12 protein - Arabidopsis thaliana gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana] Length = 1366 Score = 129 bits (324), Expect = 1e-29 Identities = 49/107 (45%), Positives = 60/107 (55%), Gaps = 31/107 (28%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQ-------------------------------EDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTM 120 >dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)] Length = 414 Score = 56.8 bits (136), Expect = 8e-08 Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 DWRT+ QD R + +L +L+ + + + +L ++A +EE I+ AI+ DYL Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71 Query: 69 KISL 72 +ISL Sbjct: 72 RISL 75 >pir||T18235 transcription activator GAL11 homolog - yeast (Candida albicans) emb|CAA21993.1| possible regulatory protein [Candida albicans] Length = 1145 Score = 43.4 bits (101), Expect = 0.001 Identities = 17/64 (26%), Positives = 35/64 (54%) Query: 10 WRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGK 69 WR + RQK + +++TL ++ + + L ++A E+L++ + ++EDYL Sbjct: 23 WRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLRA 82 Query: 70 ISLK 73 I +K Sbjct: 83 IKMK 86 >ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] pir||E84491 hypothetical protein At2g10440 [imported] - Arabidopsis thaliana gb|AAD28655.1| hypothetical protein [Arabidopsis thaliana] Length = 935 Score = 39.5 bits (91), Expect = 0.013 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 DWR+Q + RQK ++ +++ K+ + I++ IA EE ++ A ++ Sbjct: 24 DWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---IASKFEENFYSIATDKT 76 >ref|NP_217566.1| hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv] ref|NP_337653.1| transcriptional regulator, TetR family [Mycobacterium tuberculosis CDC1551] ref|NP_856721.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) [Mycobacterium bovis subsp. bovis AF2122/97] pir||E70861 hypothetical protein Rv3050c - Mycobacterium tuberculosis (strain H37RV) emb|CAA16135.1| hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv] gb|AAK47467.1| transcriptional regulator, TetR family [Mycobacterium tuberculosis CDC1551] emb|CAD96763.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) [Mycobacterium bovis subsp. bovis AF2122/97] Length = 246 Score = 34.5 bits (78), Expect = 0.40 Identities = 17/79 (21%), Positives = 39/79 (48%), Gaps = 4/79 (5%) Query: 3 PAVNTG---DWRTQQPQDSRQKNINALLDTLKKIVPHSGKE-GIDELMRIAVSLEELIFN 58 P+ G D R+++ ++ R+K N ++D + + G E + ++ A + + I+ Sbjct: 9 PSAKPGVKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAGTAKPKIYR 68 Query: 59 SAINQEDYLGKISLKMRTM 77 ++ D L I +++R M Sbjct: 69 HFTDKSDLLEAIGMRLRDM 87 >pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans Length = 337 Score = 33.4 bits (75), Expect = 0.86 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTL--KKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 + DW+ + R KN+ +++T K PH IDELM + +E + ++ A N Sbjct: 173 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPH--PRRIDELMWFSREMEIIFYSRADN 230 Query: 63 QEDYLGKISLKMRTM 77 + Y G I +++M Sbjct: 231 RYLYDGGIESMIQSM 245 >ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, nematode specific [Caenorhabditis elegans] pir||T20398 hypothetical protein E01B7.2 - Caenorhabditis elegans emb|CAB54214.1| Hypothetical protein E01B7.2 [Caenorhabditis elegans] Length = 230 Score = 33.4 bits (75), Expect = 0.95 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTL--KKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 + DW+ + R KN+ +++T K PH IDELM + +E + ++ A N Sbjct: 52 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPH--PRRIDELMWFSREMEIIFYSRADN 109 Query: 63 QEDYLGKISLKMRTM 77 + Y G I +++M Sbjct: 110 RYLYDGGIESMIQSM 124 >ref|NP_774610.1| oxidoreductase [Bradyrhizobium japonicum] dbj|BAC53235.1| oxidoreductase [Bradyrhizobium japonicum USDA 110] Length = 470 Score = 33.0 bits (74), Expect = 1.0 Identities = 17/55 (30%), Positives = 22/55 (39%), Gaps = 8/55 (14%) Query: 3 PAVNTGDWRTQQPQDSR--------QKNINALLDTLKKIVPHSGKEGIDELMRIA 49 PA N DW PQ R Q +A+L K +P + G+ L R A Sbjct: 33 PARNCNDWSASLPQTPRAVIRPLDAQGVTDAILTCRKAHLPFVPQGGLTGLCRGA 87 >ref|NP_248731.1| probable hemagglutinin [Pseudomonas aeruginosa PA01] pir||E83641 probable hemagglutinin PA0041 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03431.1|AE004443_9 probable hemagglutinin [Pseudomonas aeruginosa PAO1] Length = 3535 Score = 31.4 bits (70), Expect = 3.2 Identities = 10/44 (22%), Positives = 20/44 (44%), Gaps = 7/44 (15%) Query: 12 TQQPQDSRQKNINALLDTLKKIVP-HSGKEGIDELMRIAVSLEE 54 +Q P D ++ +N + +P S +G + L R++ E Sbjct: 2218 SQLPPDLARRQVNPVT------LPGFSLPQGDNGLFRLSSRFAE 2255 >ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] emb|CAD25704.1| MADS domain [Encephalitozoon cuniculi] Length = 776 Score = 31.0 bits (69), Expect = 4.6 Identities = 13/55 (23%), Positives = 27/55 (48%), Gaps = 1/55 (1%) Query: 14 QPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 Q+ R++ I L LK+ G + ++ A+ E+ I+ + ++E+YL Sbjct: 2 LSQEERKQMILKLFVALKESNIFPGYTPV-QIKEAAIRAEQRIYEESGSKEEYLR 55 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_173030.1| expressed protein [Arabidopsis thaliana] 139 1e-32 gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] 136 6e-32 gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 131 2e-30 dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro... 131 3e-30 pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g... 123 6e-28 ref|NP_173031.2| expressed protein [Arabidopsis thaliana] >gi|25... 123 7e-28 dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-g... 99 2e-20 pir||T18235 transcription activator GAL11 homolog - yeast (Candi... 97 5e-20 Sequences not found previously or not previously below threshold: dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-g... 49 1e-05 ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] >gi... 44 4e-04 ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] >gi|1906... 40 0.011 pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila... 38 0.029 ref|NP_524642.2| nejire CG15319-PB [Drosophila melanogaster] >gi... 38 0.032 ref|NP_217566.1| hypothetical protein Rv3050c [Mycobacterium tub... 34 0.39 dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-g... 34 0.45 ref|NP_302194.1| putative TetR-family transcriptional regulator ... 33 0.99 pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans 33 1.1 ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thal... 33 1.3 ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, ne... 33 1.4 ref|NP_774610.1| oxidoreductase [Bradyrhizobium japonicum] >gi|2... 32 1.4 ref|XP_219050.1| similar to tripartite motif protein TRIM5, isof... 31 3.1 ref|ZP_00064437.1| hypothetical protein [Leuconostoc mesenteroid... 31 4.3 ref|NP_102463.1| aromatic amino acid decarboxylase [Mesorhizobiu... 31 4.7 gb|AAM34787.1|AF512558_1 HAC5 [Arabidopsis thaliana] 31 5.5 ref|ZP_00062640.1| hypothetical protein [Leuconostoc mesenteroid... 31 6.0 ref|NP_664528.1| conserved hypothetical protein - phage associat... 30 8.5 ref|NP_606634.1| hypothetical phage protein [Streptococcus pyoge... 30 8.5 >ref|NP_173030.1| expressed protein [Arabidopsis thaliana] Length = 1335 Score = 139 bits (350), Expect = 1e-32 Identities = 49/76 (64%), Positives = 60/76 (78%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQEDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQTDYLRKISMKMLTM 89 >gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] Length = 1405 Score = 136 bits (344), Expect = 6e-32 Identities = 40/76 (52%), Positives = 57/76 (74%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 E ++TGDWRTQ DSRQ+ +N ++DTLK+ +P SG++G++EL +IA EE I+ +A Sbjct: 29 ESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAAS 88 Query: 62 NQEDYLGKISLKMRTM 77 +Q DYL KISLKM +M Sbjct: 89 SQSDYLRKISLKMLSM 104 >gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] Length = 3148 Score = 131 bits (330), Expect = 2e-30 Identities = 39/73 (53%), Positives = 51/73 (69%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 ++ DWR DSRQ+ +N ++DTLK+ +P SG EG++EL RIA EE IF SA +Q Sbjct: 12 LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQS 71 Query: 65 DYLGKISLKMRTM 77 DYL KISLKM +M Sbjct: 72 DYLRKISLKMLSM 84 >dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)] Length = 1359 Score = 131 bits (330), Expect = 3e-30 Identities = 38/75 (50%), Positives = 54/75 (71%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 PA+ GDWR+Q ++R + +N ++DTLKK +P S EG++EL +IAV EE I+ +A + Sbjct: 30 PALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATS 89 Query: 63 QEDYLGKISLKMRTM 77 Q DYL KISLKM +M Sbjct: 90 QSDYLRKISLKMLSM 104 >pir||B86292 F7H2.12 protein - Arabidopsis thaliana gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana] Length = 1366 Score = 123 bits (309), Expect = 6e-28 Identities = 49/107 (45%), Positives = 60/107 (55%), Gaps = 31/107 (28%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQ-------------------------------EDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTM 120 >ref|NP_173031.2| expressed protein [Arabidopsis thaliana] pir||C86292 F7H2.13 protein - Arabidopsis thaliana gb|AAF82149.1|AC034256_13 ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene. [Arabidopsis thaliana] gb|AAG48787.1|AF332424_1 unknown protein [Arabidopsis thaliana] Length = 179 Score = 123 bits (309), Expect = 7e-28 Identities = 77/77 (100%), Positives = 77/77 (100%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 60 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA Sbjct: 103 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 162 Query: 61 INQEDYLGKISLKMRTM 77 INQEDYLGKISLKMRTM Sbjct: 163 INQEDYLGKISLKMRTM 179 Score = 94.5 bits (234), Expect = 4e-19 Identities = 34/71 (47%), Positives = 47/71 (65%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDY 66 TGDWRTQ P SR + +N +++T K +P EG +EL +IAV EE +FN+A NQ +Y Sbjct: 4 TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63 Query: 67 LGKISLKMRTM 77 L +I +KM M Sbjct: 64 LRQICMKMLNM 74 >dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)] Length = 414 Score = 98.7 bits (245), Expect = 2e-20 Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 DWRT+ QD R + +L +L+ + + + +L ++A +EE I+ AI+ DYL Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71 Query: 69 KISL 72 +ISL Sbjct: 72 RISL 75 >pir||T18235 transcription activator GAL11 homolog - yeast (Candida albicans) emb|CAA21993.1| possible regulatory protein [Candida albicans] Length = 1145 Score = 97.2 bits (241), Expect = 5e-20 Identities = 17/64 (26%), Positives = 35/64 (54%) Query: 10 WRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGK 69 WR + RQK + +++TL ++ + + L ++A E+L++ + ++EDYL Sbjct: 23 WRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLRA 82 Query: 70 ISLK 73 I +K Sbjct: 83 IKMK 86 >dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)] Length = 87 Score = 49.4 bits (117), Expect = 1e-05 Identities = 8/37 (21%), Positives = 19/37 (50%) Query: 27 LDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQ 63 + L+ + + + +L ++A +EE I+ AI+ Sbjct: 39 MPILQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDF 75 >ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] pir||E84491 hypothetical protein At2g10440 [imported] - Arabidopsis thaliana gb|AAD28655.1| hypothetical protein [Arabidopsis thaliana] Length = 935 Score = 44.4 bits (104), Expect = 4e-04 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 DWR+Q + RQK ++ +++ K+ + I++ IA EE ++ A ++ Sbjct: 24 DWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---IASKFEENFYSIATDKT 76 >ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] emb|CAD25704.1| MADS domain [Encephalitozoon cuniculi] Length = 776 Score = 39.8 bits (92), Expect = 0.011 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 13 QQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 Q+ R++ I L LK+ G + + A+ E+ I+ + ++E+YL Sbjct: 1 MLSQEERKQMILKLFVALKESNIFPGYTPVQ-IKEAAIRAEQRIYEESGSKEEYLR 55 >pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila melanogaster) gb|AAB53050.1| CREB-binding protein homolog [Drosophila melanogaster] Length = 3190 Score = 38.3 bits (88), Expect = 0.029 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P N DWR D R ++ L+ + I P S + + L+ A +E+ ++ Sbjct: 936 PGDNEKDWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMY 992 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 993 EMAKSRSEY 1001 >ref|NP_524642.2| nejire CG15319-PB [Drosophila melanogaster] gb|AAF46516.2| CG15319-PB [Drosophila melanogaster] Length = 3276 Score = 38.3 bits (88), Expect = 0.032 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P N DWR D R ++ L+ + I P S + + L+ A +E+ ++ Sbjct: 936 PGDNEKDWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMY 992 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 993 EMAKSRSEY 1001 >ref|NP_217566.1| hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv] ref|NP_337653.1| transcriptional regulator, TetR family [Mycobacterium tuberculosis CDC1551] ref|NP_856721.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) [Mycobacterium bovis subsp. bovis AF2122/97] pir||E70861 hypothetical protein Rv3050c - Mycobacterium tuberculosis (strain H37RV) emb|CAA16135.1| hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv] gb|AAK47467.1| transcriptional regulator, TetR family [Mycobacterium tuberculosis CDC1551] emb|CAD96763.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) [Mycobacterium bovis subsp. bovis AF2122/97] Length = 246 Score = 34.4 bits (78), Expect = 0.39 Identities = 17/79 (21%), Positives = 39/79 (48%), Gaps = 4/79 (5%) Query: 3 PAVNTG---DWRTQQPQDSRQKNINALLDTLKKIVPHSGKE-GIDELMRIAVSLEELIFN 58 P+ G D R+++ ++ R+K N ++D + + G E + ++ A + + I+ Sbjct: 9 PSAKPGVKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAGTAKPKIYR 68 Query: 59 SAINQEDYLGKISLKMRTM 77 ++ D L I +++R M Sbjct: 69 HFTDKSDLLEAIGMRLRDM 87 >dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-group)] Length = 194 Score = 34.4 bits (78), Expect = 0.45 Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 9 DWRTQQPQDSRQKNINALL 27 DWRT+ QD R + + +L Sbjct: 12 DWRTRLGQDIRDRVTHDIL 30 >ref|NP_302194.1| putative TetR-family transcriptional regulator [Mycobacterium leprae] pir||G87125 probable TetR-family transcription regulator [imported] - Mycobacterium leprae emb|CAC30686.1| putative TetR-family transcriptional regulator [Mycobacterium leprae] Length = 275 Score = 33.3 bits (75), Expect = 0.99 Identities = 16/79 (20%), Positives = 38/79 (47%), Gaps = 4/79 (5%) Query: 3 PAVNTG---DWRTQQPQDSRQKNINALLDTLKKIVPHSGKE-GIDELMRIAVSLEELIFN 58 P++ G D R+++ ++ R+K ++D + + G E + E+ A + + I+ Sbjct: 38 PSMKPGVKIDARSERWREHRKKVRGEIVDAAFRALDRLGPEVSVREIAEEAGTAKPKIYR 97 Query: 59 SAINQEDYLGKISLKMRTM 77 ++ D I +++R M Sbjct: 98 HFTDKSDLFEAIGIRLRDM 116 >pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans Length = 337 Score = 32.9 bits (74), Expect = 1.1 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTL--KKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 + DW+ + R KN+ +++T K PH IDELM + +E + ++ A N Sbjct: 173 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPH--PRRIDELMWFSREMEIIFYSRADN 230 Query: 63 QEDYLGKISLKMRTM 77 + Y G I +++M Sbjct: 231 RYLYDGGIESMIQSM 245 >ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thaliana] dbj|BAB02507.1| CREB-binding protein-like [Arabidopsis thaliana] Length = 1670 Score = 32.9 bits (74), Expect = 1.3 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%) Query: 1 NEPAVNTGDWRTQQPQDS---RQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELI 56 ++P + G QD+ RQ+ +N L++ P + +L +A LE + Sbjct: 28 SQPNMVNG-----ISQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAM 82 Query: 57 FNSAINQEDYL 67 + +A ++EDYL Sbjct: 83 WRTATSKEDYL 93 >ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, nematode specific [Caenorhabditis elegans] pir||T20398 hypothetical protein E01B7.2 - Caenorhabditis elegans emb|CAB54214.1| Hypothetical protein E01B7.2 [Caenorhabditis elegans] Length = 230 Score = 32.9 bits (74), Expect = 1.4 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTL--KKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 + DW+ + R KN+ +++T K PH IDELM + +E + ++ A N Sbjct: 52 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPH--PRRIDELMWFSREMEIIFYSRADN 109 Query: 63 QEDYLGKISLKMRTM 77 + Y G I +++M Sbjct: 110 RYLYDGGIESMIQSM 124 >ref|NP_774610.1| oxidoreductase [Bradyrhizobium japonicum] dbj|BAC53235.1| oxidoreductase [Bradyrhizobium japonicum USDA 110] Length = 470 Score = 32.5 bits (73), Expect = 1.4 Identities = 17/55 (30%), Positives = 22/55 (39%), Gaps = 8/55 (14%) Query: 3 PAVNTGDWRTQQPQDSR--------QKNINALLDTLKKIVPHSGKEGIDELMRIA 49 PA N DW PQ R Q +A+L K +P + G+ L R A Sbjct: 33 PARNCNDWSASLPQTPRAVIRPLDAQGVTDAILTCRKAHLPFVPQGGLTGLCRGA 87 >ref|XP_219050.1| similar to tripartite motif protein TRIM5, isoform alpha; tripartite motif protein TRIM5; tripartite motif protein 5 [Homo sapiens] [Rattus norvegicus] Length = 503 Score = 31.3 bits (70), Expect = 3.1 Identities = 11/48 (22%), Positives = 22/48 (44%), Gaps = 6/48 (12%) Query: 11 RTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMR----IAVSLEE 54 + Q D KN+ ++ L++++ E + EL + + LEE Sbjct: 189 KNQIQSDI--KNVQIEINGLRELLDSKENEELQELKKEKEDVFQRLEE 234 >ref|ZP_00064437.1| hypothetical protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 108 Score = 30.9 bits (69), Expect = 4.3 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 6 NTGDWRTQQPQDS-RQKNINALLDTLKKIVPHSGKEGIDELMRIAVSL 52 N GDW++ D+ + + ++ K + P +G GI M IA + Sbjct: 40 NNGDWKSTLQNDAGNNQISLTVNNSNKTVFPSTGGTGIVRYMLIAGAF 87 >ref|NP_102463.1| aromatic amino acid decarboxylase [Mesorhizobium loti] dbj|BAB48249.1| aromatic amino acid decarboxylase [Mesorhizobium loti] Length = 470 Score = 30.9 bits (69), Expect = 4.7 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 9 DWRTQQPQDSRQKNINALLD--TLKKIVPHSGKEGIDELMRIAVSLEELI 56 DW R++ + L++ + + + S E + + RI EE I Sbjct: 15 DWGADYRNSLRERPVRPLVEPGDIFRSIDASPPEDAEPMDRIFADFEEKI 64 >gb|AAM34787.1|AF512558_1 HAC5 [Arabidopsis thaliana] Length = 453 Score = 30.6 bits (68), Expect = 5.5 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 19 RQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDYL 67 RQ+ +N L++ P + +L +A LE ++ +A ++EDYL Sbjct: 13 RQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYL 62 >ref|ZP_00062640.1| hypothetical protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 920 Score = 30.6 bits (68), Expect = 6.0 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 6 NTGDWRTQQPQDS-RQKNINALLDTLKKIVPHSGKEGIDELMRIAVSL 52 N GDW++ D+ + + ++ K + P +G GI M IA + Sbjct: 852 NNGDWKSTLQNDAGNNQISLTVNNSNKTVFPSTGGTGIVRYMLIAGAF 899 >ref|NP_664528.1| conserved hypothetical protein - phage associated [Streptococcus pyogenes phage 315.1] ref|NP_795416.1| putative tail fiber protein [Streptococcus pyogenes phage 315.1] gb|AAM79331.1| conserved hypothetical protein - phage associated [Streptococcus pyogenes phage 315.1] Length = 683 Score = 30.2 bits (67), Expect = 8.5 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 60 N V GD+ T Q ++SR + A+ + + + + G+ +E+ I Sbjct: 364 NRSVVTLGDYSTVQNRESRSR-KEAVQNMINESLETITGLGMT-FQEFLQDIEKRIETGK 421 Query: 61 INQEDYLGKISL 72 ED K++L Sbjct: 422 KEMEDNWRKVNL 433 >ref|NP_606634.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232] gb|AAL97133.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232] Length = 683 Score = 30.2 bits (67), Expect = 8.5 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 60 N V GD+ T Q ++SR + A+ + + + + G+ +E+ I Sbjct: 364 NRSVVTLGDYSTVQNRESRSR-KEAVQNMINESLETITGLGMT-FQEFLQDIEKRIETGK 421 Query: 61 INQEDYLGKISL 72 ED K++L Sbjct: 422 KEMEDNWRKVNL 433 Searching..................................................done Results from round 4 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_173030.1| expressed protein [Arabidopsis thaliana] 140 4e-33 gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] 136 7e-32 dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro... 131 3e-30 gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 125 1e-28 pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g... 124 2e-28 ref|NP_173031.2| expressed protein [Arabidopsis thaliana] >gi|25... 119 9e-27 dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-g... 101 4e-21 pir||T18235 transcription activator GAL11 homolog - yeast (Candi... 99 1e-20 ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] >gi... 78 3e-14 dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-g... 56 1e-07 Sequences not found previously or not previously below threshold: pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila... 42 0.003 ref|NP_524642.2| nejire CG15319-PB [Drosophila melanogaster] >gi... 42 0.003 ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] >gi|1906... 38 0.043 pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans 35 0.30 ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, ne... 34 0.45 ref|NP_217566.1| hypothetical protein Rv3050c [Mycobacterium tub... 34 0.59 gb|AAL54859.1| CREB-binding protein [Aplysia californica] 34 0.78 dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-g... 33 0.91 pir||T01055 hypothetical protein YUP8H12R.38 - Arabidopsis thali... 33 0.98 ref|NP_565197.1| p300/CBP acetyltransferase-related protein 2 [A... 33 1.0 ref|NP_044842.1| unknown [murid herpesvirus 4] >gi|1888433|emb|C... 33 1.2 pir||S41033 hypothetical protein K03H1.10 - Caenorhabditis elega... 33 1.2 ref|NP_499201.1| TAZ zinc finger and KIX domain containing prote... 33 1.3 ref|NP_302194.1| putative TetR-family transcriptional regulator ... 32 1.6 ref|XP_228602.1| similar to melanoma antigen, family B, 2 [Mus m... 32 1.6 ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thal... 32 2.0 ref|ZP_00064437.1| hypothetical protein [Leuconostoc mesenteroid... 32 2.6 ref|ZP_00062640.1| hypothetical protein [Leuconostoc mesenteroid... 31 4.2 gb|AAM34787.1|AF512558_1 HAC5 [Arabidopsis thaliana] 31 4.5 ref|NP_013208.1| RNA EXonuclease; member of 3'->5' exonuclease f... 31 4.7 ref|NP_799279.1| hypothetical protein [Vibrio parahaemolyticus R... 31 5.1 sp|P58106|Y118_CHLMU Hypothetical RNA methyltransferase TC0118 31 6.0 >ref|NP_173030.1| expressed protein [Arabidopsis thaliana] Length = 1335 Score = 140 bits (354), Expect = 4e-33 Identities = 49/76 (64%), Positives = 60/76 (78%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQEDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQTDYLRKISMKMLTM 89 >gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] Length = 1405 Score = 136 bits (343), Expect = 7e-32 Identities = 40/76 (52%), Positives = 57/76 (74%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 E ++TGDWRTQ DSRQ+ +N ++DTLK+ +P SG++G++EL +IA EE I+ +A Sbjct: 29 ESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAAS 88 Query: 62 NQEDYLGKISLKMRTM 77 +Q DYL KISLKM +M Sbjct: 89 SQSDYLRKISLKMLSM 104 >dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)] Length = 1359 Score = 131 bits (329), Expect = 3e-30 Identities = 38/75 (50%), Positives = 54/75 (71%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 PA+ GDWR+Q ++R + +N ++DTLKK +P S EG++EL +IAV EE I+ +A + Sbjct: 30 PALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATS 89 Query: 63 QEDYLGKISLKMRTM 77 Q DYL KISLKM +M Sbjct: 90 QSDYLRKISLKMLSM 104 >gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] Length = 3148 Score = 125 bits (315), Expect = 1e-28 Identities = 39/73 (53%), Positives = 51/73 (69%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 ++ DWR DSRQ+ +N ++DTLK+ +P SG EG++EL RIA EE IF SA +Q Sbjct: 12 LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQS 71 Query: 65 DYLGKISLKMRTM 77 DYL KISLKM +M Sbjct: 72 DYLRKISLKMLSM 84 >pir||B86292 F7H2.12 protein - Arabidopsis thaliana gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana] Length = 1366 Score = 124 bits (313), Expect = 2e-28 Identities = 49/107 (45%), Positives = 60/107 (55%), Gaps = 31/107 (28%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQ-------------------------------EDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTM 120 >ref|NP_173031.2| expressed protein [Arabidopsis thaliana] pir||C86292 F7H2.13 protein - Arabidopsis thaliana gb|AAF82149.1|AC034256_13 ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene. [Arabidopsis thaliana] gb|AAG48787.1|AF332424_1 unknown protein [Arabidopsis thaliana] Length = 179 Score = 119 bits (299), Expect = 9e-27 Identities = 77/77 (100%), Positives = 77/77 (100%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 60 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA Sbjct: 103 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 162 Query: 61 INQEDYLGKISLKMRTM 77 INQEDYLGKISLKMRTM Sbjct: 163 INQEDYLGKISLKMRTM 179 Score = 92.5 bits (229), Expect = 1e-18 Identities = 34/71 (47%), Positives = 47/71 (65%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDY 66 TGDWRTQ P SR + +N +++T K +P EG +EL +IAV EE +FN+A NQ +Y Sbjct: 4 TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63 Query: 67 LGKISLKMRTM 77 L +I +KM M Sbjct: 64 LRQICMKMLNM 74 >dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)] Length = 414 Score = 101 bits (251), Expect = 4e-21 Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 DWRT+ QD R + +L +L+ + + + +L ++A +EE I+ AI+ DYL Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71 Query: 69 KISL 72 +ISL Sbjct: 72 RISL 75 >pir||T18235 transcription activator GAL11 homolog - yeast (Candida albicans) emb|CAA21993.1| possible regulatory protein [Candida albicans] Length = 1145 Score = 99.1 bits (246), Expect = 1e-20 Identities = 17/64 (26%), Positives = 35/64 (54%) Query: 10 WRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGK 69 WR + RQK + +++TL ++ + + L ++A E+L++ + ++EDYL Sbjct: 23 WRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLRA 82 Query: 70 ISLK 73 I +K Sbjct: 83 IKMK 86 >ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] pir||E84491 hypothetical protein At2g10440 [imported] - Arabidopsis thaliana gb|AAD28655.1| hypothetical protein [Arabidopsis thaliana] Length = 935 Score = 78.3 bits (192), Expect = 3e-14 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 DWR+Q + RQK ++ +++ K+ + I++ IA EE ++ A ++ Sbjct: 24 DWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---IASKFEENFYSIATDKT 76 >dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)] Length = 87 Score = 55.9 bits (134), Expect = 1e-07 Identities = 8/37 (21%), Positives = 19/37 (50%) Query: 27 LDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQ 63 + L+ + + + +L ++A +EE I+ AI+ Sbjct: 39 MPILQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDF 75 >pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila melanogaster) gb|AAB53050.1| CREB-binding protein homolog [Drosophila melanogaster] Length = 3190 Score = 41.7 bits (97), Expect = 0.003 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P N DWR D R ++ L+ + I P S + + L+ A +E+ ++ Sbjct: 936 PGDNEKDWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMY 992 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 993 EMAKSRSEY 1001 >ref|NP_524642.2| nejire CG15319-PB [Drosophila melanogaster] gb|AAF46516.2| CG15319-PB [Drosophila melanogaster] Length = 3276 Score = 41.7 bits (97), Expect = 0.003 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P N DWR D R ++ L+ + I P S + + L+ A +E+ ++ Sbjct: 936 PGDNEKDWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMY 992 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 993 EMAKSRSEY 1001 >ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] emb|CAD25704.1| MADS domain [Encephalitozoon cuniculi] Length = 776 Score = 37.8 bits (87), Expect = 0.043 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 13 QQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 Q+ R++ I L LK+ G + + A+ E+ I+ + ++E+YL Sbjct: 1 MLSQEERKQMILKLFVALKESNIFPGYTPVQ-IKEAAIRAEQRIYEESGSKEEYLR 55 >pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans Length = 337 Score = 34.8 bits (79), Expect = 0.30 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTL--KKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 + DW+ + R KN+ +++T K PH IDELM + +E + ++ A N Sbjct: 173 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPH--PRRIDELMWFSREMEIIFYSRADN 230 Query: 63 QEDYLGKISLKMRTM 77 + Y G I +++M Sbjct: 231 RYLYDGGIESMIQSM 245 >ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, nematode specific [Caenorhabditis elegans] pir||T20398 hypothetical protein E01B7.2 - Caenorhabditis elegans emb|CAB54214.1| Hypothetical protein E01B7.2 [Caenorhabditis elegans] Length = 230 Score = 34.4 bits (78), Expect = 0.45 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTL--KKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 + DW+ + R KN+ +++T K PH IDELM + +E + ++ A N Sbjct: 52 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPH--PRRIDELMWFSREMEIIFYSRADN 109 Query: 63 QEDYLGKISLKMRTM 77 + Y G I +++M Sbjct: 110 RYLYDGGIESMIQSM 124 >ref|NP_217566.1| hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv] ref|NP_337653.1| transcriptional regulator, TetR family [Mycobacterium tuberculosis CDC1551] ref|NP_856721.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) [Mycobacterium bovis subsp. bovis AF2122/97] pir||E70861 hypothetical protein Rv3050c - Mycobacterium tuberculosis (strain H37RV) emb|CAA16135.1| hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv] gb|AAK47467.1| transcriptional regulator, TetR family [Mycobacterium tuberculosis CDC1551] emb|CAD96763.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) [Mycobacterium bovis subsp. bovis AF2122/97] Length = 246 Score = 34.0 bits (77), Expect = 0.59 Identities = 16/79 (20%), Positives = 38/79 (47%), Gaps = 4/79 (5%) Query: 3 PAVNTG---DWRTQQPQDSRQKNINALLD-TLKKIVPHSGKEGIDELMRIAVSLEELIFN 58 P+ G D R+++ ++ R+K N ++D + I + + ++ A + + I+ Sbjct: 9 PSAKPGVKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAGTAKPKIYR 68 Query: 59 SAINQEDYLGKISLKMRTM 77 ++ D L I +++R M Sbjct: 69 HFTDKSDLLEAIGMRLRDM 87 >gb|AAL54859.1| CREB-binding protein [Aplysia californica] Length = 2245 Score = 33.6 bits (76), Expect = 0.78 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 8/63 (12%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAINQ 63 DW Q QD R ++ L+ + I P + + + L+ A +E ++ SA N+ Sbjct: 504 DWHAQVTQDLRNHLVHKLV---QAIFPTPDQATLRDSRMKNLVAYARKVEGDMYESANNR 560 Query: 64 EDY 66 Y Sbjct: 561 GQY 563 >dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-group)] Length = 194 Score = 33.2 bits (75), Expect = 0.91 Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 9 DWRTQQPQDSRQKNINALL 27 DWRT+ QD R + + +L Sbjct: 12 DWRTRLGQDIRDRVTHDIL 30 >pir||T01055 hypothetical protein YUP8H12R.38 - Arabidopsis thaliana gb|AAC17068.1| Similar to CREB-binding protein homolog gb|U88570 from D. melanogaster and contains similarity to callus-associated protein gb|U01961 from Nicotiana tabacum. EST gb|W43427 comes from this gene. [Arabidopsis thaliana] Length = 1516 Score = 33.2 bits (75), Expect = 0.98 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDY 66 RQ + + L++ P E + M +A LEE +F A +EDY Sbjct: 51 LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDY 100 >ref|NP_565197.1| p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana] gb|AAG60059.1| p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana] Length = 1654 Score = 33.2 bits (75), Expect = 1.0 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDY 66 RQ + + L++ P E + M +A LEE +F A +EDY Sbjct: 51 LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDY 100 >ref|NP_044842.1| unknown [murid herpesvirus 4] emb|CAA72393.1| ORF2 [Murid herpesvirus 4] gb|AAB66427.1| unknown [murid herpesvirus 4] gb|AAF19270.1|AF105037_2 M2 [murid herpesvirus 4] Length = 199 Score = 32.8 bits (74), Expect = 1.2 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 10/72 (13%) Query: 11 RTQQPQDSRQKNINALLDTLK-----KIVPHSGKEGIDELMRIAVSLEELIFNSAINQED 65 RT+ P+ R + N L TLK + P E ++ A S EE I+ +A ++ Sbjct: 81 RTRFPKTIR-RGFNKLRSTLKSPWKPRPSPVPSPEEVNP----AGSPEENIYETANSEPV 135 Query: 66 YLGKISLKMRTM 77 Y+ IS + M Sbjct: 136 YIQPISTRSLMM 147 >pir||S41033 hypothetical protein K03H1.10 - Caenorhabditis elegans (fragment) Length = 316 Score = 32.8 bits (74), Expect = 1.2 Identities = 16/63 (25%), Positives = 29/63 (45%), Gaps = 6/63 (9%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEG---IDELMRIAVSLEELIFNSAINQ 63 T +W Q D R + L+ K I P + +L A +E+ +F +AI++ Sbjct: 160 TKEWHRQVTNDLRNHIVGKLV---KAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDR 216 Query: 64 EDY 66 ++Y Sbjct: 217 KNY 219 >ref|NP_499201.1| TAZ zinc finger and KIX domain containing protein family member (36.7 kD) [Caenorhabditis elegans] pir||D88569 protein K03H1.10 [imported] - Caenorhabditis elegans emb|CAA82940.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] emb|CAA82665.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] Length = 322 Score = 32.8 bits (74), Expect = 1.3 Identities = 16/63 (25%), Positives = 29/63 (45%), Gaps = 6/63 (9%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEG---IDELMRIAVSLEELIFNSAINQ 63 T +W Q D R + L+ K I P + +L A +E+ +F +AI++ Sbjct: 166 TKEWHRQVTNDLRNHIVGKLV---KAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDR 222 Query: 64 EDY 66 ++Y Sbjct: 223 KNY 225 >ref|NP_302194.1| putative TetR-family transcriptional regulator [Mycobacterium leprae] pir||G87125 probable TetR-family transcription regulator [imported] - Mycobacterium leprae emb|CAC30686.1| putative TetR-family transcriptional regulator [Mycobacterium leprae] Length = 275 Score = 32.5 bits (73), Expect = 1.6 Identities = 16/79 (20%), Positives = 38/79 (47%), Gaps = 4/79 (5%) Query: 3 PAVNTG---DWRTQQPQDSRQKNINALLDTLKKIVPHSGKE-GIDELMRIAVSLEELIFN 58 P++ G D R+++ ++ R+K ++D + + G E + E+ A + + I+ Sbjct: 38 PSMKPGVKIDARSERWREHRKKVRGEIVDAAFRALDRLGPEVSVREIAEEAGTAKPKIYR 97 Query: 59 SAINQEDYLGKISLKMRTM 77 ++ D I +++R M Sbjct: 98 HFTDKSDLFEAIGIRLRDM 116 >ref|XP_228602.1| similar to melanoma antigen, family B, 2 [Mus musculus] [Rattus norvegicus] Length = 340 Score = 32.5 bits (73), Expect = 1.6 Identities = 14/60 (23%), Positives = 24/60 (39%), Gaps = 6/60 (10%) Query: 15 PQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGKISLKM 74 D+ KN + L++ L + S + ++ R+ I D L K SL+M Sbjct: 102 SNDALTKNASMLVEFLLEKFKKSEEFTDADMQRVVSK------KYKIQFSDILRKSSLRM 155 >ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thaliana] dbj|BAB02507.1| CREB-binding protein-like [Arabidopsis thaliana] Length = 1670 Score = 32.1 bits (72), Expect = 2.0 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDYL 67 RQ+ +N L++ P + +L +A LE ++ +A ++EDYL Sbjct: 43 LRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYL 93 >ref|ZP_00064437.1| hypothetical protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 108 Score = 31.7 bits (71), Expect = 2.6 Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 1/48 (2%) Query: 6 NTGDWRTQQPQDSRQKNINALL-DTLKKIVPHSGKEGIDELMRIAVSL 52 N GDW++ D+ I+ + ++ K + P +G GI M IA + Sbjct: 40 NNGDWKSTLQNDAGNNQISLTVNNSNKTVFPSTGGTGIVRYMLIAGAF 87 >ref|ZP_00062640.1| hypothetical protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 920 Score = 30.9 bits (69), Expect = 4.2 Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 1/48 (2%) Query: 6 NTGDWRTQQPQDSRQKNINALL-DTLKKIVPHSGKEGIDELMRIAVSL 52 N GDW++ D+ I+ + ++ K + P +G GI M IA + Sbjct: 852 NNGDWKSTLQNDAGNNQISLTVNNSNKTVFPSTGGTGIVRYMLIAGAF 899 >gb|AAM34787.1|AF512558_1 HAC5 [Arabidopsis thaliana] Length = 453 Score = 30.9 bits (69), Expect = 4.5 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDYL 67 RQ+ +N L++ P + +L +A LE ++ +A ++EDYL Sbjct: 12 LRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYL 62 >ref|NP_013208.1| RNA EXonuclease; member of 3'->5' exonuclease family. See Moser et al. 1997 Nucleic acids Res. 25:5110-5118; Rex3p [Saccharomyces cerevisiae] pir||S64944 hypothetical protein YLR107w - yeast (Saccharomyces cerevisiae) gb|AAB67549.1| Ylr107wp [Saccharomyces cerevisiae] emb|CAA61685.1| putative orf [Saccharomyces cerevisiae] emb|CAA97672.1| ORF YLR107w [Saccharomyces cerevisiae] Length = 404 Score = 30.9 bits (69), Expect = 4.7 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 13 QQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDY 66 R K + L L+K H+ I +L R+A LE + ++++ + Y Sbjct: 14 PLGFQERYKILQKLFKQLQKAYAHTKGTNI-DLERLATRLEVHVAKNSLSGQSY 66 >ref|NP_799279.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] dbj|BAC61163.1| hypothetical protein [Vibrio parahaemolyticus] Length = 500 Score = 30.9 bits (69), Expect = 5.1 Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 10 WRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSL 52 W+ D +++++D L++ +P G + L A Sbjct: 92 WKQDYSDDPMLTVVSSIIDALEEHLPA-GNKKAIALKNKATRF 133 >sp|P58106|Y118_CHLMU Hypothetical RNA methyltransferase TC0118 Length = 397 Score = 30.5 bits (68), Expect = 6.0 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 9/60 (15%) Query: 11 RTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGKI 70 R+ SRQ ++ T+K + +G+E + +L A I+ Y+ KI Sbjct: 225 RSFFQPQSRQ--AEKIIQTIKDFISPTGEETLLDLYCGAG-------TIGISLSPYVKKI 275 Searching..................................................done Results from round 5 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_173030.1| expressed protein [Arabidopsis thaliana] 137 4e-32 gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] 133 6e-31 dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro... 129 7e-30 gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 123 6e-28 pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g... 121 2e-27 ref|NP_173031.2| expressed protein [Arabidopsis thaliana] >gi|25... 117 5e-26 dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-g... 99 2e-20 pir||T18235 transcription activator GAL11 homolog - yeast (Candi... 97 7e-20 pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila... 87 7e-17 ref|NP_524642.2| nejire CG15319-PB [Drosophila melanogaster] >gi... 87 7e-17 ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] >gi... 76 1e-13 dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-g... 56 2e-07 Sequences not found previously or not previously below threshold: ref|XP_311133.1| ENSANGP00000004748 [Anopheles gambiae] >gi|3017... 61 3e-09 gb|AAL54859.1| CREB-binding protein [Aplysia californica] 58 4e-08 ref|NP_499160.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis ... 54 7e-07 pir||S60123 hypothetical protein R10E11.1 - Caenorhabditis elegans 54 7e-07 ref|NP_499161.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis ... 54 7e-07 gb|AAH44677.1| Similar to CREB binding protein (Rubinstein-Taybi... 54 7e-07 prf||1923401A protein CBP 54 8e-07 gb|AAB31182.1| p300=transcription coactivator {N-terminal} [mice... 53 1e-06 ref|XP_283295.1| similar to E1A-associated protein p300 [Mus mus... 53 1e-06 ref|NP_001420.1| E1A binding protein p300; E1A-binding protein, ... 53 1e-06 ref|XP_235770.1| similar to E1A-associated protein p300 [Rattus ... 52 2e-06 ref|XP_235502.1| similar to E1A-associated protein p300 [Rattus ... 52 2e-06 gb|AAH53889.1| Unknown (protein for IMAGE:6151364) [Homo sapiens] 52 2e-06 pir||S39162 transcription coactivator CREB-binding protein - human 52 2e-06 ref|NP_004371.1| CREB binding protein [Homo sapiens] >gi|3023440... 52 2e-06 gb|AAC08447.1| CBP [Homo sapiens] 52 2e-06 gb|AAC51331.2| CREB-binding protein [Homo sapiens] 52 2e-06 sp|P45481|CBP_MOUSE CREB-binding protein >gi|481698|pir||S39161 ... 52 2e-06 gb|AAL87531.1| CREB-binding protein [Mus musculus] >gi|19547887|... 52 2e-06 pdb|1KDX|A Chain A, Kix Domain Of Mouse Cbp (Creb Binding Protei... 46 1e-04 pir||S41033 hypothetical protein K03H1.10 - Caenorhabditis elega... 46 1e-04 ref|NP_499201.1| TAZ zinc finger and KIX domain containing prote... 46 1e-04 ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] >gi|1906... 39 0.015 pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans 37 0.091 ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, ne... 36 0.14 dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-g... 34 0.41 ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thal... 33 1.0 pir||T01055 hypothetical protein YUP8H12R.38 - Arabidopsis thali... 33 1.4 ref|NP_217566.1| hypothetical protein Rv3050c [Mycobacterium tub... 32 1.4 ref|NP_565197.1| p300/CBP acetyltransferase-related protein 2 [A... 32 1.5 ref|NP_044842.1| unknown [murid herpesvirus 4] >gi|1888433|emb|C... 32 1.8 ref|XP_228602.1| similar to melanoma antigen, family B, 2 [Mus m... 32 2.0 gb|AAM34787.1|AF512558_1 HAC5 [Arabidopsis thaliana] 32 2.3 pir||JC7386 retinovin - chicken >gi|10764192|gb|AAG22597.1| reti... 32 2.8 gb|AAH09808.1|AAH09808 Unknown (protein for MGC:1377) [Homo sapi... 32 2.8 emb|CAA54274.1| IAI3B [Homo sapiens] 31 3.3 ref|NP_005890.2| membrane component, chromosome 17, surface mark... 31 3.3 sp|Q14596|M172_HUMAN Membrane component, chromosome 17, surface ... 31 3.4 ref|NP_478001.1| wsv479 [shrimp white spot syndrome virus] >gi|1... 31 6.2 gb|EAA19098.1| hypothetical protein [Plasmodium yoelii yoelii] 30 8.3 emb|CAD51365.1| Similar to Kluyveromyces lactis mismatch repair ... 30 9.0 dbj|BAB17855.1| GlcNAcase A [Alteromonas sp. O-7] 30 9.4 pir||JC7537 beta-N-acetylglucosaminidase - Alteromonas sp. (stra... 30 9.6 ref|NP_013208.1| RNA EXonuclease; member of 3'->5' exonuclease f... 30 9.9 >ref|NP_173030.1| expressed protein [Arabidopsis thaliana] Length = 1335 Score = 137 bits (346), Expect = 4e-32 Identities = 49/76 (64%), Positives = 60/76 (78%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQEDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQTDYLRKISMKMLTM 89 >gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] Length = 1405 Score = 133 bits (335), Expect = 6e-31 Identities = 40/76 (52%), Positives = 57/76 (74%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 E ++TGDWRTQ DSRQ+ +N ++DTLK+ +P SG++G++EL +IA EE I+ +A Sbjct: 29 ESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAAS 88 Query: 62 NQEDYLGKISLKMRTM 77 +Q DYL KISLKM +M Sbjct: 89 SQSDYLRKISLKMLSM 104 >dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)] Length = 1359 Score = 129 bits (326), Expect = 7e-30 Identities = 38/75 (50%), Positives = 54/75 (71%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 PA+ GDWR+Q ++R + +N ++DTLKK +P S EG++EL +IAV EE I+ +A + Sbjct: 30 PALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATS 89 Query: 63 QEDYLGKISLKMRTM 77 Q DYL KISLKM +M Sbjct: 90 QSDYLRKISLKMLSM 104 >gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] Length = 3148 Score = 123 bits (310), Expect = 6e-28 Identities = 39/73 (53%), Positives = 51/73 (69%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 ++ DWR DSRQ+ +N ++DTLK+ +P SG EG++EL RIA EE IF SA +Q Sbjct: 12 LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQS 71 Query: 65 DYLGKISLKMRTM 77 DYL KISLKM +M Sbjct: 72 DYLRKISLKMLSM 84 >pir||B86292 F7H2.12 protein - Arabidopsis thaliana gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana] Length = 1366 Score = 121 bits (305), Expect = 2e-27 Identities = 49/107 (45%), Positives = 60/107 (55%), Gaps = 31/107 (28%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQ-------------------------------EDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTM 120 >ref|NP_173031.2| expressed protein [Arabidopsis thaliana] pir||C86292 F7H2.13 protein - Arabidopsis thaliana gb|AAF82149.1|AC034256_13 ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene. [Arabidopsis thaliana] gb|AAG48787.1|AF332424_1 unknown protein [Arabidopsis thaliana] Length = 179 Score = 117 bits (293), Expect = 5e-26 Identities = 77/77 (100%), Positives = 77/77 (100%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 60 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA Sbjct: 103 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 162 Query: 61 INQEDYLGKISLKMRTM 77 INQEDYLGKISLKMRTM Sbjct: 163 INQEDYLGKISLKMRTM 179 Score = 91.7 bits (227), Expect = 2e-18 Identities = 34/73 (46%), Positives = 47/73 (63%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 TGDWRTQ P SR + +N +++T K +P EG +EL +IAV EE +FN+A NQ Sbjct: 2 DTTGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQT 61 Query: 65 DYLGKISLKMRTM 77 +YL +I +KM M Sbjct: 62 EYLRQICMKMLNM 74 >dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)] Length = 414 Score = 99.1 bits (246), Expect = 2e-20 Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 DWRT+ QD R + +L +L+ + + + +L ++A +EE I+ AI+ DYL Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71 Query: 69 KISL 72 +ISL Sbjct: 72 RISL 75 >pir||T18235 transcription activator GAL11 homolog - yeast (Candida albicans) emb|CAA21993.1| possible regulatory protein [Candida albicans] Length = 1145 Score = 96.8 bits (240), Expect = 7e-20 Identities = 17/64 (26%), Positives = 35/64 (54%) Query: 10 WRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGK 69 WR + RQK + +++TL ++ + + L ++A E+L++ + ++EDYL Sbjct: 23 WRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLRA 82 Query: 70 ISLK 73 I +K Sbjct: 83 IKMK 86 >pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila melanogaster) gb|AAB53050.1| CREB-binding protein homolog [Drosophila melanogaster] Length = 3190 Score = 86.7 bits (214), Expect = 7e-17 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P N DWR D R ++ L+ + I P S + + L+ A +E+ ++ Sbjct: 936 PGDNEKDWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMY 992 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 993 EMAKSRSEY 1001 >ref|NP_524642.2| nejire CG15319-PB [Drosophila melanogaster] gb|AAF46516.2| CG15319-PB [Drosophila melanogaster] Length = 3276 Score = 86.7 bits (214), Expect = 7e-17 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P N DWR D R ++ L+ + I P S + + L+ A +E+ ++ Sbjct: 936 PGDNEKDWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMY 992 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 993 EMAKSRSEY 1001 >ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] pir||E84491 hypothetical protein At2g10440 [imported] - Arabidopsis thaliana gb|AAD28655.1| hypothetical protein [Arabidopsis thaliana] Length = 935 Score = 76.3 bits (187), Expect = 1e-13 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 DWR+Q + RQK ++ +++ K+ + I++ IA EE ++ A ++ Sbjct: 24 DWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---IASKFEENFYSIATDKT 76 >ref|XP_311133.1| ENSANGP00000004748 [Anopheles gambiae] gb|EAA06516.2| ENSANGP00000004748 [Anopheles gambiae str. PEST] Length = 2572 Score = 61.3 bits (148), Expect = 3e-09 Identities = 14/69 (20%), Positives = 27/69 (38%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P T DW D R ++ L+ + I P + + L+ A +E ++ Sbjct: 738 PVQGTKDWHHSVTPDLRNHLVHKLV---QAIFPSPDPSAMFDKRMYNLVAYAKKVEGDMY 794 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 795 EMANSRSEY 803 >gb|AAL54859.1| CREB-binding protein [Aplysia californica] Length = 2245 Score = 57.8 bits (139), Expect = 4e-08 Identities = 17/69 (24%), Positives = 30/69 (42%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P + DW Q QD R ++ L+ + I P + + + L+ A +E ++ Sbjct: 498 PVSSRKDWHAQVTQDLRNHLVHKLV---QAIFPTPDQATLRDSRMKNLVAYARKVEGDMY 554 Query: 58 NSAINQEDY 66 SA N+ Y Sbjct: 555 ESANNRGQY 563 >dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)] Length = 87 Score = 55.5 bits (133), Expect = 2e-07 Identities = 8/37 (21%), Positives = 19/37 (50%) Query: 27 LDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQ 63 + L+ + + + +L ++A +EE I+ AI+ Sbjct: 39 MPILQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDF 75 >ref|NP_499160.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis elegans] sp|P34545|CBP1_CAEEL Protein cbp-1 pir||G88564 protein R10E11.1 [imported] - Caenorhabditis elegans emb|CAD18875.1| C. elegans CBP-1 protein (corresponding sequence R10E11.1b) [Caenorhabditis elegans] Length = 2056 Score = 53.6 bits (128), Expect = 7e-07 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID-----ELMRIAVSLEELIFNSAI 61 T +W Q +D R + L+ K I P +E ++ +L+ A +E+ +F SA Sbjct: 595 TKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFESAN 651 Query: 62 NQEDY 66 ++E+Y Sbjct: 652 DREEY 656 >pir||S60123 hypothetical protein R10E11.1 - Caenorhabditis elegans Length = 2027 Score = 53.6 bits (128), Expect = 7e-07 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID-----ELMRIAVSLEELIFNSAI 61 T +W Q +D R + L+ K I P +E ++ +L+ A +E+ +F SA Sbjct: 595 TKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFESAN 651 Query: 62 NQEDY 66 ++E+Y Sbjct: 652 DREEY 656 >ref|NP_499161.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis elegans] emb|CAA82353.2| C. elegans CBP-1 protein (corresponding sequence R10E11.1a) [Caenorhabditis elegans] Length = 2045 Score = 53.6 bits (128), Expect = 7e-07 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID-----ELMRIAVSLEELIFNSAI 61 T +W Q +D R + L+ K I P +E ++ +L+ A +E+ +F SA Sbjct: 584 TKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFESAN 640 Query: 62 NQEDY 66 ++E+Y Sbjct: 641 DREEY 645 >gb|AAH44677.1| Similar to CREB binding protein (Rubinstein-Taybi syndrome) [Xenopus laevis] Length = 1047 Score = 53.6 bits (128), Expect = 7e-07 Identities = 13/62 (20%), Positives = 27/62 (42%), Gaps = 8/62 (12%) Query: 10 WRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAINQE 64 W QD R ++ L+ + I P + + L+ A +E ++ SA +++ Sbjct: 581 WHEHVTQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESANSRD 637 Query: 65 DY 66 +Y Sbjct: 638 EY 639 >prf||1923401A protein CBP Length = 2441 Score = 53.6 bits (128), Expect = 8e-07 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W + QD R ++ L+ + I P + + L+ A +E ++ SA + Sbjct: 589 KGWHERVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 645 Query: 63 QEDY 66 +++Y Sbjct: 646 RDEY 649 >gb|AAB31182.1| p300=transcription coactivator {N-terminal} [mice, Peptide Partial, 688 aa] Length = 688 Score = 52.8 bits (126), Expect = 1e-06 Identities = 14/64 (21%), Positives = 26/64 (39%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA N Sbjct: 570 KQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESANN 626 Query: 63 QEDY 66 + +Y Sbjct: 627 RAEY 630 >ref|XP_283295.1| similar to E1A-associated protein p300 [Mus musculus] ref|NP_808489.1| hypothetical protein A730011L11 [Mus musculus] dbj|BAC31311.1| unnamed protein product [Mus musculus] Length = 714 Score = 52.8 bits (126), Expect = 1e-06 Identities = 14/64 (21%), Positives = 26/64 (39%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA N Sbjct: 570 KQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESANN 626 Query: 63 QEDY 66 + +Y Sbjct: 627 RAEY 630 >ref|NP_001420.1| E1A binding protein p300; E1A-binding protein, 300kD [Homo sapiens] sp|Q09472|P300_HUMAN E1A-associated protein p300 pir||A54277 transcription adaptor protein p300 - human gb|AAA18639.1| p300 protein Length = 2414 Score = 52.8 bits (126), Expect = 1e-06 Identities = 14/64 (21%), Positives = 26/64 (39%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA N Sbjct: 569 KQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESANN 625 Query: 63 QEDY 66 + +Y Sbjct: 626 RAEY 629 >ref|XP_235770.1| similar to E1A-associated protein p300 [Rattus norvegicus] Length = 1605 Score = 52.5 bits (125), Expect = 2e-06 Identities = 14/64 (21%), Positives = 26/64 (39%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA N Sbjct: 198 KQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESANN 254 Query: 63 QEDY 66 + +Y Sbjct: 255 RAEY 258 >ref|XP_235502.1| similar to E1A-associated protein p300 [Rattus norvegicus] Length = 2156 Score = 52.5 bits (125), Expect = 2e-06 Identities = 14/64 (21%), Positives = 26/64 (39%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA N Sbjct: 198 KQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESANN 254 Query: 63 QEDY 66 + +Y Sbjct: 255 RAEY 258 >gb|AAH53889.1| Unknown (protein for IMAGE:6151364) [Homo sapiens] Length = 1553 Score = 52.1 bits (124), Expect = 2e-06 Identities = 14/64 (21%), Positives = 26/64 (39%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA N Sbjct: 569 KQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESANN 625 Query: 63 QEDY 66 + +Y Sbjct: 626 RAEY 629 >pir||S39162 transcription coactivator CREB-binding protein - human Length = 2440 Score = 52.1 bits (124), Expect = 2e-06 Identities = 13/64 (20%), Positives = 27/64 (41%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA + Sbjct: 590 KGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 646 Query: 63 QEDY 66 +++Y Sbjct: 647 RDEY 650 >ref|NP_004371.1| CREB binding protein [Homo sapiens] sp|Q92793|CBP_HUMAN CREB-binding protein gb|AAC51770.1| CREB-binding protein Length = 2442 Score = 52.1 bits (124), Expect = 2e-06 Identities = 13/64 (20%), Positives = 27/64 (41%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA + Sbjct: 590 KGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 646 Query: 63 QEDY 66 +++Y Sbjct: 647 RDEY 650 >gb|AAC08447.1| CBP [Homo sapiens] Length = 555 Score = 52.1 bits (124), Expect = 2e-06 Identities = 13/64 (20%), Positives = 27/64 (41%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA + Sbjct: 324 KGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 380 Query: 63 QEDY 66 +++Y Sbjct: 381 RDEY 384 >gb|AAC51331.2| CREB-binding protein [Homo sapiens] Length = 2442 Score = 52.1 bits (124), Expect = 2e-06 Identities = 13/64 (20%), Positives = 27/64 (41%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA + Sbjct: 590 KGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 646 Query: 63 QEDY 66 +++Y Sbjct: 647 RDEY 650 >sp|P45481|CBP_MOUSE CREB-binding protein pir||S39161 CREB-binding protein - mouse gb|AAB28651.1| CREB-binding protein; CBP [Mus sp.] Length = 2441 Score = 52.1 bits (124), Expect = 2e-06 Identities = 13/64 (20%), Positives = 27/64 (41%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA + Sbjct: 589 KGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 645 Query: 63 QEDY 66 +++Y Sbjct: 646 RDEY 649 >gb|AAL87531.1| CREB-binding protein [Mus musculus] gb|AAL87532.1| CREB-binding protein [Mus musculus] Length = 2429 Score = 52.1 bits (124), Expect = 2e-06 Identities = 13/64 (20%), Positives = 27/64 (41%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA + Sbjct: 583 KGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 639 Query: 63 QEDY 66 +++Y Sbjct: 640 RDEY 643 >pdb|1KDX|A Chain A, Kix Domain Of Mouse Cbp (Creb Binding Protein) In Complex With Phosphorylated Kinase Inducible Domain (Pkid) Of Rat Creb (Cyclic Amp Response Element Binding Protein), Nmr 17 Structures Length = 81 Score = 46.3 bits (109), Expect = 1e-04 Identities = 13/64 (20%), Positives = 27/64 (41%), Gaps = 8/64 (12%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAIN 62 W QD R ++ L+ + I P + + L+ A +E ++ SA + Sbjct: 4 KGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANS 60 Query: 63 QEDY 66 +++Y Sbjct: 61 RDEY 64 >pir||S41033 hypothetical protein K03H1.10 - Caenorhabditis elegans (fragment) Length = 316 Score = 46.3 bits (109), Expect = 1e-04 Identities = 16/63 (25%), Positives = 29/63 (45%), Gaps = 6/63 (9%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEG---IDELMRIAVSLEELIFNSAINQ 63 T +W Q D R + L+ K I P + +L A +E+ +F +AI++ Sbjct: 160 TKEWHRQVTNDLRNHIVGKLV---KAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDR 216 Query: 64 EDY 66 ++Y Sbjct: 217 KNY 219 >ref|NP_499201.1| TAZ zinc finger and KIX domain containing protein family member (36.7 kD) [Caenorhabditis elegans] pir||D88569 protein K03H1.10 [imported] - Caenorhabditis elegans emb|CAA82940.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] emb|CAA82665.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] Length = 322 Score = 46.3 bits (109), Expect = 1e-04 Identities = 16/63 (25%), Positives = 29/63 (45%), Gaps = 6/63 (9%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEG---IDELMRIAVSLEELIFNSAINQ 63 T +W Q D R + L+ K I P + +L A +E+ +F +AI++ Sbjct: 166 TKEWHRQVTNDLRNHIVGKLV---KAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDR 222 Query: 64 EDY 66 ++Y Sbjct: 223 KNY 225 >ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] emb|CAD25704.1| MADS domain [Encephalitozoon cuniculi] Length = 776 Score = 39.4 bits (91), Expect = 0.015 Identities = 16/58 (27%), Positives = 27/58 (45%), Gaps = 5/58 (8%) Query: 13 QQPQDSRQKNINALLDTLKK--IVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 Q+ R++ I L LK+ I P I E A+ E+ I+ + ++E+YL Sbjct: 1 MLSQEERKQMILKLFVALKESNIFPGYTPVQIKEA---AIRAEQRIYEESGSKEEYLR 55 >pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans Length = 337 Score = 36.7 bits (84), Expect = 0.091 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTL--KKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 + DW+ + R KN+ +++T K PH IDELM + +E + ++ A N Sbjct: 173 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPH--PRRIDELMWFSREMEIIFYSRADN 230 Query: 63 QEDYLGKISLKMRTM 77 + Y G I +++M Sbjct: 231 RYLYDGGIESMIQSM 245 >ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, nematode specific [Caenorhabditis elegans] pir||T20398 hypothetical protein E01B7.2 - Caenorhabditis elegans emb|CAB54214.1| Hypothetical protein E01B7.2 [Caenorhabditis elegans] Length = 230 Score = 35.9 bits (82), Expect = 0.14 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTL--KKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 + DW+ + R KN+ +++T K PH IDELM + +E + ++ A N Sbjct: 52 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPH--PRRIDELMWFSREMEIIFYSRADN 109 Query: 63 QEDYLGKISLKMRTM 77 + Y G I +++M Sbjct: 110 RYLYDGGIESMIQSM 124 >dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-group)] Length = 194 Score = 34.4 bits (78), Expect = 0.41 Identities = 8/23 (34%), Positives = 12/23 (51%) Query: 5 VNTGDWRTQQPQDSRQKNINALL 27 DWRT+ QD R + + +L Sbjct: 8 DEGVDWRTRLGQDIRDRVTHDIL 30 >ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thaliana] dbj|BAB02507.1| CREB-binding protein-like [Arabidopsis thaliana] Length = 1670 Score = 33.2 bits (75), Expect = 1.0 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 18 SRQKNINALLDTLKKIVPH-SGKEGIDELMRIAVSLEELIFNSAINQEDYL 67 RQ+ +N L++ P + +L +A LE ++ +A ++EDYL Sbjct: 43 LRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYL 93 >pir||T01055 hypothetical protein YUP8H12R.38 - Arabidopsis thaliana gb|AAC17068.1| Similar to CREB-binding protein homolog gb|U88570 from D. melanogaster and contains similarity to callus-associated protein gb|U01961 from Nicotiana tabacum. EST gb|W43427 comes from this gene. [Arabidopsis thaliana] Length = 1516 Score = 32.8 bits (74), Expect = 1.4 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 18 SRQKNINALLDTLKKIVPH-SGKEGIDELMRIAVSLEELIFNSAINQEDY 66 RQ + + L++ P + + + M +A LEE +F A +EDY Sbjct: 51 LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDY 100 >ref|NP_217566.1| hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv] ref|NP_337653.1| transcriptional regulator, TetR family [Mycobacterium tuberculosis CDC1551] ref|NP_856721.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) [Mycobacterium bovis subsp. bovis AF2122/97] pir||E70861 hypothetical protein Rv3050c - Mycobacterium tuberculosis (strain H37RV) emb|CAA16135.1| hypothetical protein Rv3050c [Mycobacterium tuberculosis H37Rv] gb|AAK47467.1| transcriptional regulator, TetR family [Mycobacterium tuberculosis CDC1551] emb|CAD96763.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY ASNC-FAMILY) [Mycobacterium bovis subsp. bovis AF2122/97] Length = 246 Score = 32.4 bits (73), Expect = 1.4 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 9 DWRTQQPQDSRQKNINALLD-TLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYL 67 D R+++ ++ R+K N ++D + I + + ++ A + + I+ ++ D L Sbjct: 18 DARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVRQIAEEAGTAKPKIYRHFTDKSDLL 77 Query: 68 GKISLKMRTM 77 I +++R M Sbjct: 78 EAIGMRLRDM 87 >ref|NP_565197.1| p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana] gb|AAG60059.1| p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana] Length = 1654 Score = 32.4 bits (73), Expect = 1.5 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 18 SRQKNINALLDTLKKIVPH-SGKEGIDELMRIAVSLEELIFNSAINQEDY 66 RQ + + L++ P + + + M +A LEE +F A +EDY Sbjct: 51 LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDY 100 >ref|NP_044842.1| unknown [murid herpesvirus 4] emb|CAA72393.1| ORF2 [Murid herpesvirus 4] gb|AAB66427.1| unknown [murid herpesvirus 4] gb|AAF19270.1|AF105037_2 M2 [murid herpesvirus 4] Length = 199 Score = 32.4 bits (73), Expect = 1.8 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 10/72 (13%) Query: 11 RTQQPQDSRQKNINALLDTLK-----KIVPHSGKEGIDELMRIAVSLEELIFNSAINQED 65 RT+ P+ R + N L TLK + P E ++ A S EE I+ +A ++ Sbjct: 81 RTRFPKTIR-RGFNKLRSTLKSPWKPRPSPVPSPEEVNP----AGSPEENIYETANSEPV 135 Query: 66 YLGKISLKMRTM 77 Y+ IS + M Sbjct: 136 YIQPISTRSLMM 147 >ref|XP_228602.1| similar to melanoma antigen, family B, 2 [Mus musculus] [Rattus norvegicus] Length = 340 Score = 32.0 bits (72), Expect = 2.0 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 17 DSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGKISLKM 74 D+ KN + L++ L + S + ++ R+ I D L K SL+M Sbjct: 104 DALTKNASMLVEFLLEKFKKSEEFTDADMQRVVSK------KYKIQFSDILRKSSLRM 155 >gb|AAM34787.1|AF512558_1 HAC5 [Arabidopsis thaliana] Length = 453 Score = 32.0 bits (72), Expect = 2.3 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 18 SRQKNINALLDTLKKIVPH-SGKEGIDELMRIAVSLEELIFNSAINQEDYL 67 RQ+ +N L++ P + +L +A LE ++ +A ++EDYL Sbjct: 12 LRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYL 62 >pir||JC7386 retinovin - chicken gb|AAG22597.1| retinovin [Gallus gallus] Length = 753 Score = 31.7 bits (71), Expect = 2.8 Identities = 14/57 (24%), Positives = 27/57 (46%), Gaps = 7/57 (12%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNS 59 P N D R+Q+ Q +K + L+ ++ +PH ++L + LEE ++ Sbjct: 51 PCNNCSD-RSQRRQMILEKVPSILMFHFQEGLPH------NKLKSYSFQLEEDVYQI 100 >gb|AAH09808.1|AAH09808 Unknown (protein for MGC:1377) [Homo sapiens] Length = 937 Score = 31.7 bits (71), Expect = 2.8 Identities = 7/35 (20%), Positives = 18/35 (51%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVP 35 ++P DW T + R++ +N ++ L++ + Sbjct: 144 DQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLH 178 >emb|CAA54274.1| IAI3B [Homo sapiens] Length = 966 Score = 31.3 bits (70), Expect = 3.3 Identities = 7/35 (20%), Positives = 18/35 (51%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVP 35 ++P DW T + R++ +N ++ L++ + Sbjct: 144 DQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLH 178 >ref|NP_005890.2| membrane component, chromosome 17, surface marker 2; 1A1-3B; neighbor of BRCA1 gene 1 [Homo sapiens] ref|NP_114064.1| membrane component, chromosome 17, surface marker 2; 1A1-3B; neighbor of BRCA1 gene 1 [Homo sapiens] ref|NP_114068.1| membrane component, chromosome 17, surface marker 2; 1A1-3B; neighbor of BRCA1 gene 1 [Homo sapiens] dbj|BAA06417.1| KIAA0049 [Homo sapiens] Length = 966 Score = 31.3 bits (70), Expect = 3.3 Identities = 7/35 (20%), Positives = 18/35 (51%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVP 35 ++P DW T + R++ +N ++ L++ + Sbjct: 144 DQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLH 178 >sp|Q14596|M172_HUMAN Membrane component, chromosome 17, surface marker 2 (Next to BRCA1 gene 1 protein) (1A1-3B) Length = 966 Score = 31.3 bits (70), Expect = 3.4 Identities = 7/35 (20%), Positives = 18/35 (51%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVP 35 ++P DW T + R++ +N ++ L++ + Sbjct: 144 DQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLH 178 >ref|NP_478001.1| wsv479 [shrimp white spot syndrome virus] gb|AAL33480.1| wsv479 [shrimp white spot syndrome virus] gb|AAL88874.1| WSSV006 [shrimp white spot syndrome virus] Length = 509 Score = 30.5 bits (68), Expect = 6.2 Identities = 19/64 (29%), Positives = 32/64 (49%), Gaps = 7/64 (10%) Query: 4 AVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQ 63 A + DW + P+D R IN ++ ++ +PH L RI L + +FN+AI+ Sbjct: 88 AESESDWLKRLPEDLRN--INNIVK--REALPHDKSFTFSPLYRI---LTDRLFNAAIHN 140 Query: 64 EDYL 67 Y+ Sbjct: 141 CKYI 144 >gb|EAA19098.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 342 Score = 30.1 bits (67), Expect = 8.3 Identities = 12/65 (18%), Positives = 23/65 (34%) Query: 11 RTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGKI 70 R D R K IN L K ++E+ + + + +F +A ++Y Sbjct: 77 RNLFSNDIRNKKINEFLQKKKNSCYLHINSNVNEIKKKRDKILKNVFLNAKLLQEYFNNF 136 Query: 71 SLKMR 75 + Sbjct: 137 KSSLL 141 >emb|CAD51365.1| Similar to Kluyveromyces lactis mismatch repair protein Msh2p msh2 SWALL:Q96W95 (EMBL:AF332582) (956 aa) fasta scores: E(): 8.5e-48, 31.13% id in 819 aa, and to Homo sapiens DNA mismatch repair protein Msh2 msh2 SWALL:MSH2_HUMAN (SWALL:P43246) (934 aa) fa [Plasmodium falciparum 3D7] gb|AAO86765.1| DNA mismatch repair enzyme [Plasmodium falciparum] Length = 873 Score = 30.1 bits (67), Expect = 9.0 Identities = 11/38 (28%), Positives = 19/38 (49%) Query: 33 IVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGKI 70 I P ++ I+E + + +E +I Q DYL K+ Sbjct: 223 IHPIRDEKKINERLDMVEIFKEESVIRSIIQSDYLRKV 260 >dbj|BAB17855.1| GlcNAcase A [Alteromonas sp. O-7] Length = 863 Score = 29.7 bits (66), Expect = 9.4 Identities = 8/37 (21%), Positives = 18/37 (48%) Query: 37 SGKEGIDELMRIAVSLEELIFNSAINQEDYLGKISLK 73 + ++ A+ E N ++++ED L +I+ K Sbjct: 175 NTPTDYTQIANAALRFERNQSNISVSKEDALRRINPK 211 >pir||JC7537 beta-N-acetylglucosaminidase - Alteromonas sp. (strain O-7) Length = 863 Score = 29.7 bits (66), Expect = 9.6 Identities = 8/37 (21%), Positives = 18/37 (48%) Query: 37 SGKEGIDELMRIAVSLEELIFNSAINQEDYLGKISLK 73 + ++ A+ E N ++++ED L +I+ K Sbjct: 175 NTPTDYTQIANAALRFERNQSNISVSKEDALRRINPK 211 >ref|NP_013208.1| RNA EXonuclease; member of 3'->5' exonuclease family. See Moser et al. 1997 Nucleic acids Res. 25:5110-5118; Rex3p [Saccharomyces cerevisiae] pir||S64944 hypothetical protein YLR107w - yeast (Saccharomyces cerevisiae) gb|AAB67549.1| Ylr107wp [Saccharomyces cerevisiae] emb|CAA61685.1| putative orf [Saccharomyces cerevisiae] emb|CAA97672.1| ORF YLR107w [Saccharomyces cerevisiae] Length = 404 Score = 29.7 bits (66), Expect = 9.9 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 13 QQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDY 66 R K + L L+K H+ I +L R+A LE + ++++ + Y Sbjct: 14 PLGFQERYKILQKLFKQLQKAYAHTKGTNI-DLERLATRLEVHVAKNSLSGQSY 66 Searching..................................................done Results from round 6 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_173030.1| expressed protein [Arabidopsis thaliana] 132 1e-30 gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] 127 3e-29 dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro... 124 4e-28 gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 117 3e-26 pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g... 116 9e-26 ref|NP_173031.2| expressed protein [Arabidopsis thaliana] >gi|25... 114 4e-25 ref|XP_311133.1| ENSANGP00000004748 [Anopheles gambiae] >gi|3017... 96 2e-19 dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-g... 94 3e-19 pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila... 93 1e-18 ref|NP_524642.2| nejire CG15319-PB [Drosophila melanogaster] >gi... 93 1e-18 gb|AAL54859.1| CREB-binding protein [Aplysia californica] 92 2e-18 pir||T18235 transcription activator GAL11 homolog - yeast (Candi... 92 2e-18 gb|AAH44677.1| Similar to CREB binding protein (Rubinstein-Taybi... 88 4e-17 pir||S60123 hypothetical protein R10E11.1 - Caenorhabditis elegans 87 6e-17 ref|NP_499161.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis ... 87 6e-17 ref|NP_499160.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis ... 87 6e-17 gb|AAB31182.1| p300=transcription coactivator {N-terminal} [mice... 87 6e-17 ref|XP_283295.1| similar to E1A-associated protein p300 [Mus mus... 87 6e-17 ref|NP_001420.1| E1A binding protein p300; E1A-binding protein, ... 86 1e-16 prf||1923401A protein CBP 86 1e-16 gb|AAH53889.1| Unknown (protein for IMAGE:6151364) [Homo sapiens] 86 1e-16 ref|XP_235770.1| similar to E1A-associated protein p300 [Rattus ... 86 1e-16 ref|NP_004371.1| CREB binding protein [Homo sapiens] >gi|3023440... 86 1e-16 gb|AAC51331.2| CREB-binding protein [Homo sapiens] 86 1e-16 ref|XP_235502.1| similar to E1A-associated protein p300 [Rattus ... 86 1e-16 pir||S39162 transcription coactivator CREB-binding protein - human 86 1e-16 gb|AAC08447.1| CBP [Homo sapiens] 86 2e-16 gb|AAL87531.1| CREB-binding protein [Mus musculus] >gi|19547887|... 86 2e-16 sp|P45481|CBP_MOUSE CREB-binding protein >gi|481698|pir||S39161 ... 86 2e-16 pir||S41033 hypothetical protein K03H1.10 - Caenorhabditis elega... 79 2e-14 ref|NP_499201.1| TAZ zinc finger and KIX domain containing prote... 78 2e-14 pdb|1KDX|A Chain A, Kix Domain Of Mouse Cbp (Creb Binding Protei... 76 2e-13 ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] >gi... 75 3e-13 dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-g... 52 1e-06 Sequences not found previously or not previously below threshold: pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans 42 0.002 ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, ne... 41 0.003 ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] >gi|1906... 41 0.006 ref|NP_493339.1| KIX domain containing protein family member (80... 39 0.017 pir||T01055 hypothetical protein YUP8H12R.38 - Arabidopsis thali... 38 0.030 ref|NP_565197.1| p300/CBP acetyltransferase-related protein 2 [A... 38 0.035 ref|NP_044842.1| unknown [murid herpesvirus 4] >gi|1888433|emb|C... 36 0.17 ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thal... 35 0.25 ref|NP_173115.1| expressed protein [Arabidopsis thaliana] 34 0.41 gb|AAM34787.1|AF512558_1 HAC5 [Arabidopsis thaliana] 34 0.48 gb|AAP31820.1| CRM1 [Trypanosoma cruzi] 34 0.58 dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-g... 33 1.1 gb|AAL78684.1| ABC transporter ABCD.2 [Dictyostelium discoideum] 33 1.4 ref|NP_741151.1| Putative nuclear protein, nematode specific [Ca... 31 3.2 ref|NP_741152.1| Putative nuclear protein, nematode specific [Ca... 31 3.2 ref|XP_228602.1| similar to melanoma antigen, family B, 2 [Mus m... 31 3.7 pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans 31 3.8 ref|NP_794547.1| lipoprotein, putative [Pseudomonas syringae pv.... 31 4.1 ref|NP_341855.1| Conserved hypothetical protein [Sulfolobus solf... 31 4.7 ref|NP_680756.1| expressed protein [Arabidopsis thaliana] >gi|28... 31 6.2 ref|ZP_00126130.1| hypothetical protein [Pseudomonas syringae pv... 31 6.6 ref|NP_509376.1| KIX domain containing protein family member [Ca... 30 8.2 >ref|NP_173030.1| expressed protein [Arabidopsis thaliana] Length = 1335 Score = 132 bits (332), Expect = 1e-30 Identities = 49/76 (64%), Positives = 60/76 (78%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQEDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQTDYLRKISMKMLTM 89 >gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] Length = 1405 Score = 127 bits (320), Expect = 3e-29 Identities = 40/76 (52%), Positives = 57/76 (74%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 E ++TGDWRTQ DSRQ+ +N ++DTLK+ +P SG++G++EL +IA EE I+ +A Sbjct: 29 ESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAAS 88 Query: 62 NQEDYLGKISLKMRTM 77 +Q DYL KISLKM +M Sbjct: 89 SQSDYLRKISLKMLSM 104 >dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)] Length = 1359 Score = 124 bits (311), Expect = 4e-28 Identities = 38/75 (50%), Positives = 54/75 (71%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 PA+ GDWR+Q ++R + +N ++DTLKK +P S EG++EL +IAV EE I+ +A + Sbjct: 30 PALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATS 89 Query: 63 QEDYLGKISLKMRTM 77 Q DYL KISLKM +M Sbjct: 90 QSDYLRKISLKMLSM 104 >gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] Length = 3148 Score = 117 bits (295), Expect = 3e-26 Identities = 39/73 (53%), Positives = 51/73 (69%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 ++ DWR DSRQ+ +N ++DTLK+ +P SG EG++EL RIA EE IF SA +Q Sbjct: 12 LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQS 71 Query: 65 DYLGKISLKMRTM 77 DYL KISLKM +M Sbjct: 72 DYLRKISLKMLSM 84 >pir||B86292 F7H2.12 protein - Arabidopsis thaliana gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana] Length = 1366 Score = 116 bits (291), Expect = 9e-26 Identities = 49/107 (45%), Positives = 60/107 (55%), Gaps = 31/107 (28%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQ-------------------------------EDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTM 120 >ref|NP_173031.2| expressed protein [Arabidopsis thaliana] pir||C86292 F7H2.13 protein - Arabidopsis thaliana gb|AAF82149.1|AC034256_13 ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene. [Arabidopsis thaliana] gb|AAG48787.1|AF332424_1 unknown protein [Arabidopsis thaliana] Length = 179 Score = 114 bits (285), Expect = 4e-25 Identities = 77/77 (100%), Positives = 77/77 (100%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 60 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA Sbjct: 103 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 162 Query: 61 INQEDYLGKISLKMRTM 77 INQEDYLGKISLKMRTM Sbjct: 163 INQEDYLGKISLKMRTM 179 Score = 88.3 bits (218), Expect = 3e-17 Identities = 34/71 (47%), Positives = 47/71 (65%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDY 66 TGDWRTQ P SR + +N +++T K +P EG +EL +IAV EE +FN+A NQ +Y Sbjct: 4 TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63 Query: 67 LGKISLKMRTM 77 L +I +KM M Sbjct: 64 LRQICMKMLNM 74 >ref|XP_311133.1| ENSANGP00000004748 [Anopheles gambiae] gb|EAA06516.2| ENSANGP00000004748 [Anopheles gambiae str. PEST] Length = 2572 Score = 95.6 bits (237), Expect = 2e-19 Identities = 14/69 (20%), Positives = 27/69 (38%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P T DW D R ++ L+ + I P + + L+ A +E ++ Sbjct: 738 PVQGTKDWHHSVTPDLRNHLVHKLV---QAIFPSPDPSAMFDKRMYNLVAYAKKVEGDMY 794 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 795 EMANSRSEY 803 >dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)] Length = 414 Score = 94.4 bits (234), Expect = 3e-19 Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 DWRT+ QD R + +L +L+ + + + +L ++A +EE I+ AI+ DYL Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71 Query: 69 KISL 72 +ISL Sbjct: 72 RISL 75 >pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila melanogaster) gb|AAB53050.1| CREB-binding protein homolog [Drosophila melanogaster] Length = 3190 Score = 92.9 bits (230), Expect = 1e-18 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P N DWR D R ++ L+ + I P S + + L+ A +E+ ++ Sbjct: 936 PGDNEKDWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMY 992 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 993 EMAKSRSEY 1001 >ref|NP_524642.2| nejire CG15319-PB [Drosophila melanogaster] gb|AAF46516.2| CG15319-PB [Drosophila melanogaster] Length = 3276 Score = 92.9 bits (230), Expect = 1e-18 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P N DWR D R ++ L+ + I P S + + L+ A +E+ ++ Sbjct: 936 PGDNEKDWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMY 992 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 993 EMAKSRSEY 1001 >gb|AAL54859.1| CREB-binding protein [Aplysia californica] Length = 2245 Score = 91.8 bits (227), Expect = 2e-18 Identities = 17/69 (24%), Positives = 30/69 (42%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P + DW Q QD R ++ L+ + I P + + + L+ A +E ++ Sbjct: 498 PVSSRKDWHAQVTQDLRNHLVHKLV---QAIFPTPDQATLRDSRMKNLVAYARKVEGDMY 554 Query: 58 NSAINQEDY 66 SA N+ Y Sbjct: 555 ESANNRGQY 563 >pir||T18235 transcription activator GAL11 homolog - yeast (Candida albicans) emb|CAA21993.1| possible regulatory protein [Candida albicans] Length = 1145 Score = 91.8 bits (227), Expect = 2e-18 Identities = 17/64 (26%), Positives = 35/64 (54%) Query: 10 WRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGK 69 WR + RQK + +++TL ++ + + L ++A E+L++ + ++EDYL Sbjct: 23 WRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLRA 82 Query: 70 ISLK 73 I +K Sbjct: 83 IKMK 86 >gb|AAH44677.1| Similar to CREB binding protein (Rubinstein-Taybi syndrome) [Xenopus laevis] Length = 1047 Score = 87.5 bits (216), Expect = 4e-17 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 578 RKAWHEHVTQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 634 Query: 62 NQEDY 66 ++++Y Sbjct: 635 SRDEY 639 >pir||S60123 hypothetical protein R10E11.1 - Caenorhabditis elegans Length = 2027 Score = 87.1 bits (215), Expect = 6e-17 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID-----ELMRIAVSLEELIFNSAI 61 T +W Q +D R + L+ K I P +E ++ +L+ A +E+ +F SA Sbjct: 595 TKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFESAN 651 Query: 62 NQEDY 66 ++E+Y Sbjct: 652 DREEY 656 >ref|NP_499161.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis elegans] emb|CAA82353.2| C. elegans CBP-1 protein (corresponding sequence R10E11.1a) [Caenorhabditis elegans] Length = 2045 Score = 87.1 bits (215), Expect = 6e-17 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID-----ELMRIAVSLEELIFNSAI 61 T +W Q +D R + L+ K I P +E ++ +L+ A +E+ +F SA Sbjct: 584 TKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFESAN 640 Query: 62 NQEDY 66 ++E+Y Sbjct: 641 DREEY 645 >ref|NP_499160.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis elegans] sp|P34545|CBP1_CAEEL Protein cbp-1 pir||G88564 protein R10E11.1 [imported] - Caenorhabditis elegans emb|CAD18875.1| C. elegans CBP-1 protein (corresponding sequence R10E11.1b) [Caenorhabditis elegans] Length = 2056 Score = 87.1 bits (215), Expect = 6e-17 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID-----ELMRIAVSLEELIFNSAI 61 T +W Q +D R + L+ K I P +E ++ +L+ A +E+ +F SA Sbjct: 595 TKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFESAN 651 Query: 62 NQEDY 66 ++E+Y Sbjct: 652 DREEY 656 >gb|AAB31182.1| p300=transcription coactivator {N-terminal} [mice, Peptide Partial, 688 aa] Length = 688 Score = 87.1 bits (215), Expect = 6e-17 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 569 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 625 Query: 62 NQEDY 66 N+ +Y Sbjct: 626 NRAEY 630 >ref|XP_283295.1| similar to E1A-associated protein p300 [Mus musculus] ref|NP_808489.1| hypothetical protein A730011L11 [Mus musculus] dbj|BAC31311.1| unnamed protein product [Mus musculus] Length = 714 Score = 87.1 bits (215), Expect = 6e-17 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 569 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 625 Query: 62 NQEDY 66 N+ +Y Sbjct: 626 NRAEY 630 >ref|NP_001420.1| E1A binding protein p300; E1A-binding protein, 300kD [Homo sapiens] sp|Q09472|P300_HUMAN E1A-associated protein p300 pir||A54277 transcription adaptor protein p300 - human gb|AAA18639.1| p300 protein Length = 2414 Score = 86.4 bits (213), Expect = 1e-16 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 568 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 624 Query: 62 NQEDY 66 N+ +Y Sbjct: 625 NRAEY 629 >prf||1923401A protein CBP Length = 2441 Score = 86.0 bits (212), Expect = 1e-16 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W + QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 588 RKGWHERVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 644 Query: 62 NQEDY 66 ++++Y Sbjct: 645 SRDEY 649 >gb|AAH53889.1| Unknown (protein for IMAGE:6151364) [Homo sapiens] Length = 1553 Score = 86.0 bits (212), Expect = 1e-16 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 568 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 624 Query: 62 NQEDY 66 N+ +Y Sbjct: 625 NRAEY 629 >ref|XP_235770.1| similar to E1A-associated protein p300 [Rattus norvegicus] Length = 1605 Score = 86.0 bits (212), Expect = 1e-16 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 197 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 253 Query: 62 NQEDY 66 N+ +Y Sbjct: 254 NRAEY 258 >ref|NP_004371.1| CREB binding protein [Homo sapiens] sp|Q92793|CBP_HUMAN CREB-binding protein gb|AAC51770.1| CREB-binding protein Length = 2442 Score = 86.0 bits (212), Expect = 1e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 589 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 645 Query: 62 NQEDY 66 ++++Y Sbjct: 646 SRDEY 650 >gb|AAC51331.2| CREB-binding protein [Homo sapiens] Length = 2442 Score = 86.0 bits (212), Expect = 1e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 589 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 645 Query: 62 NQEDY 66 ++++Y Sbjct: 646 SRDEY 650 >ref|XP_235502.1| similar to E1A-associated protein p300 [Rattus norvegicus] Length = 2156 Score = 86.0 bits (212), Expect = 1e-16 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 197 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 253 Query: 62 NQEDY 66 N+ +Y Sbjct: 254 NRAEY 258 >pir||S39162 transcription coactivator CREB-binding protein - human Length = 2440 Score = 85.6 bits (211), Expect = 1e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 589 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 645 Query: 62 NQEDY 66 ++++Y Sbjct: 646 SRDEY 650 >gb|AAC08447.1| CBP [Homo sapiens] Length = 555 Score = 85.6 bits (211), Expect = 2e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 323 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 379 Query: 62 NQEDY 66 ++++Y Sbjct: 380 SRDEY 384 >gb|AAL87531.1| CREB-binding protein [Mus musculus] gb|AAL87532.1| CREB-binding protein [Mus musculus] Length = 2429 Score = 85.6 bits (211), Expect = 2e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 582 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 638 Query: 62 NQEDY 66 ++++Y Sbjct: 639 SRDEY 643 >sp|P45481|CBP_MOUSE CREB-binding protein pir||S39161 CREB-binding protein - mouse gb|AAB28651.1| CREB-binding protein; CBP [Mus sp.] Length = 2441 Score = 85.6 bits (211), Expect = 2e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 588 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 644 Query: 62 NQEDY 66 ++++Y Sbjct: 645 SRDEY 649 >pir||S41033 hypothetical protein K03H1.10 - Caenorhabditis elegans (fragment) Length = 316 Score = 78.7 bits (193), Expect = 2e-14 Identities = 16/63 (25%), Positives = 29/63 (45%), Gaps = 6/63 (9%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEG---IDELMRIAVSLEELIFNSAINQ 63 T +W Q D R + L+ K I P + +L A +E+ +F +AI++ Sbjct: 160 TKEWHRQVTNDLRNHIVGKLV---KAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDR 216 Query: 64 EDY 66 ++Y Sbjct: 217 KNY 219 >ref|NP_499201.1| TAZ zinc finger and KIX domain containing protein family member (36.7 kD) [Caenorhabditis elegans] pir||D88569 protein K03H1.10 [imported] - Caenorhabditis elegans emb|CAA82940.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] emb|CAA82665.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] Length = 322 Score = 78.3 bits (192), Expect = 2e-14 Identities = 16/63 (25%), Positives = 29/63 (45%), Gaps = 6/63 (9%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEG---IDELMRIAVSLEELIFNSAINQ 63 T +W Q D R + L+ K I P + +L A +E+ +F +AI++ Sbjct: 166 TKEWHRQVTNDLRNHIVGKLV---KAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDR 222 Query: 64 EDY 66 ++Y Sbjct: 223 KNY 225 >pdb|1KDX|A Chain A, Kix Domain Of Mouse Cbp (Creb Binding Protein) In Complex With Phosphorylated Kinase Inducible Domain (Pkid) Of Rat Creb (Cyclic Amp Response Element Binding Protein), Nmr 17 Structures Length = 81 Score = 75.6 bits (185), Expect = 2e-13 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 3 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 59 Query: 62 NQEDY 66 ++++Y Sbjct: 60 SRDEY 64 >ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] pir||E84491 hypothetical protein At2g10440 [imported] - Arabidopsis thaliana gb|AAD28655.1| hypothetical protein [Arabidopsis thaliana] Length = 935 Score = 74.8 bits (183), Expect = 3e-13 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 4 AVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQ 63 A N DWR+Q + RQK ++ +++ K+ + I++ IA EE ++ A ++ Sbjct: 19 ANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---IASKFEENFYSIATDK 75 Query: 64 E 64 Sbjct: 76 T 76 >dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)] Length = 87 Score = 52.5 bits (125), Expect = 1e-06 Identities = 9/41 (21%), Positives = 20/41 (47%) Query: 23 INALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQ 63 I + L+ + + + +L ++A +EE I+ AI+ Sbjct: 35 IGQTMPILQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDF 75 >pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans Length = 337 Score = 41.7 bits (97), Expect = 0.002 Identities = 18/73 (24%), Positives = 34/73 (45%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 + DW+ + R KN+ +++T IDELM + +E + ++ A N+ Sbjct: 173 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPHPRRIDELMWFSREMEIIFYSRADNRY 232 Query: 65 DYLGKISLKMRTM 77 Y G I +++M Sbjct: 233 LYDGGIESMIQSM 245 >ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, nematode specific [Caenorhabditis elegans] pir||T20398 hypothetical protein E01B7.2 - Caenorhabditis elegans emb|CAB54214.1| Hypothetical protein E01B7.2 [Caenorhabditis elegans] Length = 230 Score = 41.3 bits (96), Expect = 0.003 Identities = 18/73 (24%), Positives = 34/73 (45%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 + DW+ + R KN+ +++T IDELM + +E + ++ A N+ Sbjct: 52 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPHPRRIDELMWFSREMEIIFYSRADNRY 111 Query: 65 DYLGKISLKMRTM 77 Y G I +++M Sbjct: 112 LYDGGIESMIQSM 124 >ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] emb|CAD25704.1| MADS domain [Encephalitozoon cuniculi] Length = 776 Score = 40.5 bits (94), Expect = 0.006 Identities = 16/58 (27%), Positives = 27/58 (45%), Gaps = 5/58 (8%) Query: 13 QQPQDSRQKNINALLDTLKK--IVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 Q+ R++ I L LK+ I P I E A+ E+ I+ + ++E+YL Sbjct: 1 MLSQEERKQMILKLFVALKESNIFPGYTPVQIKEA---AIRAEQRIYEESGSKEEYLR 55 >ref|NP_493339.1| KIX domain containing protein family member (80.3 kD) [Caenorhabditis elegans] pir||T23651 hypothetical protein M01E5.6 - Caenorhabditis elegans emb|CAB07643.1| Hypothetical protein M01E5.6 [Caenorhabditis elegans] emb|CAB03290.1| Hypothetical protein M01E5.6 [Caenorhabditis elegans] Length = 702 Score = 39.0 bits (90), Expect = 0.017 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEG---IDELMRIAVSLEELIFNSAINQE 64 +W +D R + LL + + + +L+ A E I ++ +++ Sbjct: 600 KEW---IVEDIRNHMVGKLLKAFWPRIQNVEEMNGELFKKLIANARKCETEILEASNDRD 656 Query: 65 DYLGKISL 72 +Y + L Sbjct: 657 EYYRLMQL 664 >pir||T01055 hypothetical protein YUP8H12R.38 - Arabidopsis thaliana gb|AAC17068.1| Similar to CREB-binding protein homolog gb|U88570 from D. melanogaster and contains similarity to callus-associated protein gb|U01961 from Nicotiana tabacum. EST gb|W43427 comes from this gene. [Arabidopsis thaliana] Length = 1516 Score = 38.2 bits (88), Expect = 0.030 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDY 66 RQ + + L++ P E + M +A LEE +F A +EDY Sbjct: 51 LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDY 100 >ref|NP_565197.1| p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana] gb|AAG60059.1| p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana] Length = 1654 Score = 37.8 bits (87), Expect = 0.035 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDY 66 RQ + + L++ P E + M +A LEE +F A +EDY Sbjct: 51 LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDY 100 >ref|NP_044842.1| unknown [murid herpesvirus 4] emb|CAA72393.1| ORF2 [Murid herpesvirus 4] gb|AAB66427.1| unknown [murid herpesvirus 4] gb|AAF19270.1|AF105037_2 M2 [murid herpesvirus 4] Length = 199 Score = 35.5 bits (81), Expect = 0.17 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 10/72 (13%) Query: 11 RTQQPQDSRQKNINALLDTLK-----KIVPHSGKEGIDELMRIAVSLEELIFNSAINQED 65 RT+ P+ R + N L TLK + P E ++ A S EE I+ +A ++ Sbjct: 81 RTRFPKTIR-RGFNKLRSTLKSPWKPRPSPVPSPEEVNP----AGSPEENIYETANSEPV 135 Query: 66 YLGKISLKMRTM 77 Y+ IS + M Sbjct: 136 YIQPISTRSLMM 147 >ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thaliana] dbj|BAB02507.1| CREB-binding protein-like [Arabidopsis thaliana] Length = 1670 Score = 35.1 bits (80), Expect = 0.25 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDYL 67 RQ+ +N L++ P + +L +A LE ++ +A ++EDYL Sbjct: 43 LRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYL 93 >ref|NP_173115.1| expressed protein [Arabidopsis thaliana] Length = 1706 Score = 34.4 bits (78), Expect = 0.41 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDYLGKISLKMR 75 RQ + + L++ P + M +A LEE +F A+ +EDY+ + +L+ R Sbjct: 73 LRQYMQTLVFNMLQQRQPSPADAASKAKYMDVARRLEEGLFKMAVTKEDYMNRSTLESR 131 >gb|AAM34787.1|AF512558_1 HAC5 [Arabidopsis thaliana] Length = 453 Score = 34.4 bits (78), Expect = 0.48 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDYL 67 RQ+ +N L++ P + +L +A LE ++ +A ++EDYL Sbjct: 12 LRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYL 62 >gb|AAP31820.1| CRM1 [Trypanosoma cruzi] Length = 1034 Score = 34.0 bits (77), Expect = 0.58 Identities = 11/46 (23%), Positives = 22/46 (46%), Gaps = 6/46 (13%) Query: 13 QQPQDSRQK------NINALLDTLKKIVPHSGKEGIDELMRIAVSL 52 Q P+ R + +L+ +K++ P + +D LM+IA + Sbjct: 528 QYPRFLRSHPNFLSTVVRKILEFMKELFPGVQEMAVDTLMKIASQV 573 >dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-group)] Length = 194 Score = 33.2 bits (75), Expect = 1.1 Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 9 DWRTQQPQDSRQKNINALL 27 DWRT+ QD R + + +L Sbjct: 12 DWRTRLGQDIRDRVTHDIL 30 >gb|AAL78684.1| ABC transporter ABCD.2 [Dictyostelium discoideum] Length = 741 Score = 32.8 bits (74), Expect = 1.4 Identities = 9/57 (15%), Positives = 22/57 (37%), Gaps = 8/57 (14%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE--LMRIAVSLEELIFNS 59 +T DW T +Q+ + ++ H + I + ++ +E I+ + Sbjct: 640 DDTKDWFTALSGGQKQRI------AMARLFYHRPQYAILDECTSAVSDEVEGKIYET 690 >ref|NP_741151.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] gb|AAM54164.1|U00066_6 Hypothetical protein R12B2.5b [Caenorhabditis elegans] Length = 777 Score = 31.3 bits (70), Expect = 3.2 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 18/72 (25%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKK------IVPHSGKEGIDELMRIAVSLEELIFN 58 ++ DW R+ I L L + +P G A +EE +F Sbjct: 1 MSEEDWP---SPKFREHVIQRLEPELARNRQNAPNLPVPGD---------ARQVEEYVFA 48 Query: 59 SAINQEDYLGKI 70 +++++Y+ I Sbjct: 49 KCMSKDEYMRTI 60 >ref|NP_741152.1| Putative nuclear protein, nematode specific [Caenorhabditis elegans] sp|Q21955|YNL5_CAEEL Hypothetical protein R12B2.5 in chromosome III gb|AAA50743.3| Hypothetical protein R12B2.5a [Caenorhabditis elegans] Length = 780 Score = 31.3 bits (70), Expect = 3.2 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 18/72 (25%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKK------IVPHSGKEGIDELMRIAVSLEELIFN 58 ++ DW R+ I L L + +P G A +EE +F Sbjct: 1 MSEEDWP---SPKFREHVIQRLEPELARNRQNAPNLPVPGD---------ARQVEEYVFA 48 Query: 59 SAINQEDYLGKI 70 +++++Y+ I Sbjct: 49 KCMSKDEYMRTI 60 >ref|XP_228602.1| similar to melanoma antigen, family B, 2 [Mus musculus] [Rattus norvegicus] Length = 340 Score = 31.3 bits (70), Expect = 3.7 Identities = 14/61 (22%), Positives = 24/61 (38%), Gaps = 6/61 (9%) Query: 14 QPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGKISLK 73 D+ KN + L++ L + S + ++ R+ I D L K SL+ Sbjct: 101 ISNDALTKNASMLVEFLLEKFKKSEEFTDADMQRVVSK------KYKIQFSDILRKSSLR 154 Query: 74 M 74 M Sbjct: 155 M 155 >pir||T16726 hypothetical protein R12B2.5 - Caenorhabditis elegans Length = 760 Score = 31.3 bits (70), Expect = 3.8 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 18/72 (25%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKK------IVPHSGKEGIDELMRIAVSLEELIFN 58 ++ DW R+ I L L + +P G A +EE +F Sbjct: 1 MSEEDWP---SPKFREHVIQRLEPELARNRQNAPNLPVPGD---------ARQVEEYVFA 48 Query: 59 SAINQEDYLGKI 70 +++++Y+ I Sbjct: 49 KCMSKDEYMRTI 60 >ref|NP_794547.1| lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO58242.1| lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 201 Score = 31.3 bits (70), Expect = 4.1 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 7/52 (13%) Query: 12 TQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIA---VSLEELIFNSA 60 +Q Q+ R I L+ L+++ +DEL A E +A Sbjct: 136 SQVRQEMRNDLIQKLMARLQQL----TPSRLDELQAKADAVAKAEADALEAA 183 >ref|NP_341855.1| Conserved hypothetical protein [Sulfolobus solfataricus] pir||F90173 conserved hypothetical protein [imported] - Sulfolobus solfataricus gb|AAK40645.1| Conserved hypothetical protein [Sulfolobus solfataricus] Length = 275 Score = 30.9 bits (69), Expect = 4.7 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Query: 39 KEGIDELMRIAVSLEELIFNSAINQEDYLGKISL 72 ++EL + + EE IF A+ +DYL + + Sbjct: 170 PVNLNELRKYSHVFEE-IFKIAL--KDYLTAMKM 200 >ref|NP_680756.1| expressed protein [Arabidopsis thaliana] gb|AAO41883.1| unknown protein [Arabidopsis thaliana] gb|AAO50719.1| unknown protein [Arabidopsis thaliana] Length = 238 Score = 30.5 bits (68), Expect = 6.2 Identities = 11/61 (18%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 10 WRTQQPQDSRQKNINALLDTLKKIVPHSGKEGI---DELMRIAVSLEELIFNSAINQEDY 66 W + + Q R I + + +I S ++ ++L + + EE++++ A ++ +Y Sbjct: 16 WHSDRHQPMRGLLIQEIFRIVCEIHSQSTRKNTEWQEKLPVVVLRAEEIMYSKANSEAEY 75 Query: 67 L 67 + Sbjct: 76 M 76 >ref|ZP_00126130.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a] Length = 224 Score = 30.5 bits (68), Expect = 6.6 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 7/52 (13%) Query: 12 TQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIA---VSLEELIFNSA 60 +Q Q+ R I ++ L+++ +DEL A E +A Sbjct: 159 SQVRQEMRNDLIQKMMARLQQL----TPSRLDELQAKADAVAKAEADALEAA 206 >ref|NP_509376.1| KIX domain containing protein family member [Caenorhabditis elegans] pir||T16139 hypothetical protein F22F1.3 - Caenorhabditis elegans gb|AAA83283.1| Hypothetical protein F22F1.3 [Caenorhabditis elegans] Length = 295 Score = 30.1 bits (67), Expect = 8.2 Identities = 12/65 (18%), Positives = 28/65 (42%), Gaps = 8/65 (12%) Query: 18 SRQKNINALLDTLKKIVPHSGKEG-----IDELMRIAVSLEELIFNSAINQEDYLGKISL 72 RQ I ++ ++ VP + + EL A +E+ F +++Y +++ Sbjct: 70 LRQYMITKIV---REAVPRPNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYYAELAR 126 Query: 73 KMRTM 77 + +M Sbjct: 127 IILSM 131 Searching..................................................done Results from round 7 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_173030.1| expressed protein [Arabidopsis thaliana] 127 4e-29 gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] 121 2e-27 dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-gro... 119 9e-27 gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] 114 3e-25 ref|NP_173031.2| expressed protein [Arabidopsis thaliana] >gi|25... 112 1e-24 pir||B86292 F7H2.12 protein - Arabidopsis thaliana >gi|8927657|g... 111 2e-24 pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans 102 1e-21 ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, ne... 100 4e-21 ref|XP_311133.1| ENSANGP00000004748 [Anopheles gambiae] >gi|3017... 93 1e-18 dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-g... 92 2e-18 gb|AAL54859.1| CREB-binding protein [Aplysia californica] 90 7e-18 pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila... 90 9e-18 ref|NP_524642.2| nejire CG15319-PB [Drosophila melanogaster] >gi... 89 1e-17 pir||T18235 transcription activator GAL11 homolog - yeast (Candi... 89 2e-17 gb|AAH44677.1| Similar to CREB binding protein (Rubinstein-Taybi... 87 6e-17 gb|AAB31182.1| p300=transcription coactivator {N-terminal} [mice... 87 7e-17 ref|XP_283295.1| similar to E1A-associated protein p300 [Mus mus... 87 7e-17 ref|NP_001420.1| E1A binding protein p300; E1A-binding protein, ... 86 1e-16 ref|XP_235770.1| similar to E1A-associated protein p300 [Rattus ... 86 2e-16 gb|AAH53889.1| Unknown (protein for IMAGE:6151364) [Homo sapiens] 86 2e-16 ref|XP_235502.1| similar to E1A-associated protein p300 [Rattus ... 85 2e-16 prf||1923401A protein CBP 84 5e-16 ref|NP_004371.1| CREB binding protein [Homo sapiens] >gi|3023440... 84 5e-16 gb|AAC51331.2| CREB-binding protein [Homo sapiens] 84 5e-16 pir||S39162 transcription coactivator CREB-binding protein - human 84 5e-16 pir||S60123 hypothetical protein R10E11.1 - Caenorhabditis elegans 84 5e-16 ref|NP_499161.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis ... 84 6e-16 ref|NP_499160.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis ... 84 6e-16 sp|P45481|CBP_MOUSE CREB-binding protein >gi|481698|pir||S39161 ... 84 7e-16 gb|AAL87531.1| CREB-binding protein [Mus musculus] >gi|19547887|... 84 7e-16 gb|AAC08447.1| CBP [Homo sapiens] 84 7e-16 ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] >gi... 78 2e-14 pir||S41033 hypothetical protein K03H1.10 - Caenorhabditis elega... 76 1e-13 ref|NP_499201.1| TAZ zinc finger and KIX domain containing prote... 76 1e-13 pdb|1KDX|A Chain A, Kix Domain Of Mouse Cbp (Creb Binding Protei... 74 3e-13 dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-g... 55 2e-07 Sequences not found previously or not previously below threshold: ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] >gi|1906... 40 0.008 pir||T01055 hypothetical protein YUP8H12R.38 - Arabidopsis thali... 37 0.047 ref|NP_565197.1| p300/CBP acetyltransferase-related protein 2 [A... 37 0.054 ref|NP_493339.1| KIX domain containing protein family member (80... 37 0.061 gb|AAP31820.1| CRM1 [Trypanosoma cruzi] 34 0.57 ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thal... 34 0.59 gb|AAM34787.1|AF512558_1 HAC5 [Arabidopsis thaliana] 33 1.1 ref|NP_680756.1| expressed protein [Arabidopsis thaliana] >gi|28... 33 1.3 ref|NP_794547.1| lipoprotein, putative [Pseudomonas syringae pv.... 32 1.5 ref|NP_044842.1| unknown [murid herpesvirus 4] >gi|1888433|emb|C... 32 1.8 ref|ZP_00126130.1| hypothetical protein [Pseudomonas syringae pv... 32 2.2 ref|NP_173115.1| expressed protein [Arabidopsis thaliana] 32 2.3 ref|NP_181034.1| hypothetical protein [Arabidopsis thaliana] >gi... 32 2.5 dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-g... 32 2.7 ref|ZP_00091640.1| hypothetical protein [Azotobacter vinelandii] 31 3.7 ref|NP_509376.1| KIX domain containing protein family member [Ca... 31 4.1 gb|EAA23178.1| hypothetical protein [Fusobacterium nucleatum sub... 30 6.4 ref|NP_189057.1| expressed protein [Arabidopsis thaliana] 30 7.7 ref|ZP_00060980.1| hypothetical protein [Clostridium thermocellu... 30 8.0 CONVERGED! >ref|NP_173030.1| expressed protein [Arabidopsis thaliana] Length = 1335 Score = 127 bits (320), Expect = 4e-29 Identities = 49/76 (64%), Positives = 60/76 (78%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQEDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQTDYLRKISMKMLTM 89 >gb|AAN62354.1|AF506028_23 CTV.22 [Poncirus trifoliata] Length = 1405 Score = 121 bits (305), Expect = 2e-27 Identities = 40/76 (52%), Positives = 57/76 (74%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 E ++TGDWRTQ DSRQ+ +N ++DTLK+ +P SG++G++EL +IA EE I+ +A Sbjct: 29 ESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAAS 88 Query: 62 NQEDYLGKISLKMRTM 77 +Q DYL KISLKM +M Sbjct: 89 SQSDYLRKISLKMLSM 104 >dbj|BAC56002.1| P0705A05.20 [Oryza sativa (japonica cultivar-group)] Length = 1359 Score = 119 bits (300), Expect = 9e-27 Identities = 38/75 (50%), Positives = 54/75 (71%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 PA+ GDWR+Q ++R + +N ++DTLKK +P S EG++EL +IAV EE I+ +A + Sbjct: 30 PALAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATS 89 Query: 63 QEDYLGKISLKMRTM 77 Q DYL KISLKM +M Sbjct: 90 QSDYLRKISLKMLSM 104 >gb|AAN62347.1|AF506028_14 CTV.20 [Poncirus trifoliata] Length = 3148 Score = 114 bits (286), Expect = 3e-25 Identities = 39/73 (53%), Positives = 51/73 (69%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 ++ DWR DSRQ+ +N ++DTLK+ +P SG EG++EL RIA EE IF SA +Q Sbjct: 12 LDPSDWRNPLSHDSRQRIVNKIMDTLKRHLPFSGPEGLNELKRIADRFEEKIFTSATSQS 71 Query: 65 DYLGKISLKMRTM 77 DYL KISLKM +M Sbjct: 72 DYLRKISLKMLSM 84 >ref|NP_173031.2| expressed protein [Arabidopsis thaliana] pir||C86292 F7H2.13 protein - Arabidopsis thaliana gb|AAF82149.1|AC034256_13 ESTs gb|AI995735, gb|T44391, gb|AA395434 come from this gene. [Arabidopsis thaliana] gb|AAG48787.1|AF332424_1 unknown protein [Arabidopsis thaliana] Length = 179 Score = 112 bits (282), Expect = 1e-24 Identities = 77/77 (100%), Positives = 77/77 (100%) Query: 1 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 60 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA Sbjct: 103 NEPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSA 162 Query: 61 INQEDYLGKISLKMRTM 77 INQEDYLGKISLKMRTM Sbjct: 163 INQEDYLGKISLKMRTM 179 Score = 83.6 bits (206), Expect = 7e-16 Identities = 34/71 (47%), Positives = 47/71 (65%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDY 66 TGDWRTQ P SR + +N +++T K +P EG +EL +IAV EE +FN+A NQ +Y Sbjct: 4 TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63 Query: 67 LGKISLKMRTM 77 L +I +KM M Sbjct: 64 LRQICMKMLNM 74 >pir||B86292 F7H2.12 protein - Arabidopsis thaliana gb|AAF82148.1|AC034256_12 EST gb|N38213 comes from this gene. [Arabidopsis thaliana] Length = 1366 Score = 111 bits (278), Expect = 2e-24 Identities = 49/107 (45%), Positives = 60/107 (55%), Gaps = 31/107 (28%) Query: 2 EPAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAI 61 EPA++TGDWRTQ P DSRQK +N +++TLKK +P SG EGI+EL RIA EE IF+ A+ Sbjct: 14 EPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRIAARFEEKIFSGAL 73 Query: 62 NQ-------------------------------EDYLGKISLKMRTM 77 NQ DYL KIS+KM TM Sbjct: 74 NQRFVRQWTPQHGKELTFGICKAKPQYVGYEIHTDYLRKISMKMLTM 120 >pir||E89403 protein C06H5.4 [imported] - Caenorhabditis elegans Length = 337 Score = 102 bits (255), Expect = 1e-21 Identities = 18/73 (24%), Positives = 34/73 (45%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 + DW+ + R KN+ +++T IDELM + +E + ++ A N+ Sbjct: 173 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPHPRRIDELMWFSREMEIIFYSRADNRY 232 Query: 65 DYLGKISLKMRTM 77 Y G I +++M Sbjct: 233 LYDGGIESMIQSM 245 >ref|NP_507512.1| Predicted CDS, putative cytoplasmic protein, nematode specific [Caenorhabditis elegans] pir||T20398 hypothetical protein E01B7.2 - Caenorhabditis elegans emb|CAB54214.1| Hypothetical protein E01B7.2 [Caenorhabditis elegans] Length = 230 Score = 100 bits (251), Expect = 4e-21 Identities = 18/73 (24%), Positives = 34/73 (45%) Query: 5 VNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQE 64 + DW+ + R KN+ +++T IDELM + +E + ++ A N+ Sbjct: 52 LGPHDWQKDVTLEDRMKNVQKIVNTFYCTKSGPHPRRIDELMWFSREMEIIFYSRADNRY 111 Query: 65 DYLGKISLKMRTM 77 Y G I +++M Sbjct: 112 LYDGGIESMIQSM 124 >ref|XP_311133.1| ENSANGP00000004748 [Anopheles gambiae] gb|EAA06516.2| ENSANGP00000004748 [Anopheles gambiae str. PEST] Length = 2572 Score = 92.9 bits (230), Expect = 1e-18 Identities = 14/69 (20%), Positives = 27/69 (38%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P T DW D R ++ L+ + I P + + L+ A +E ++ Sbjct: 738 PVQGTKDWHHSVTPDLRNHLVHKLV---QAIFPSPDPSAMFDKRMYNLVAYAKKVEGDMY 794 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 795 EMANSRSEY 803 >dbj|BAC45101.1| OJ1705_C03.23 [Oryza sativa (japonica cultivar-group)] Length = 414 Score = 92.1 bits (228), Expect = 2e-18 Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLG 68 DWRT+ QD R + +L +L+ + + + +L ++A +EE I+ AI+ DYL Sbjct: 12 DWRTRLGQDIRDRVKRDILFSLQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDFGDYLR 71 Query: 69 KISL 72 +ISL Sbjct: 72 RISL 75 >gb|AAL54859.1| CREB-binding protein [Aplysia californica] Length = 2245 Score = 90.2 bits (223), Expect = 7e-18 Identities = 17/69 (24%), Positives = 30/69 (42%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P + DW Q QD R ++ L+ + I P + + + L+ A +E ++ Sbjct: 498 PVSSRKDWHAQVTQDLRNHLVHKLV---QAIFPTPDQATLRDSRMKNLVAYARKVEGDMY 554 Query: 58 NSAINQEDY 66 SA N+ Y Sbjct: 555 ESANNRGQY 563 >pir||T13828 CREB-binding protein homolog - fruit fly (Drosophila melanogaster) gb|AAB53050.1| CREB-binding protein homolog [Drosophila melanogaster] Length = 3190 Score = 89.8 bits (222), Expect = 9e-18 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P N DWR D R ++ L+ + I P S + + L+ A +E+ ++ Sbjct: 936 PGDNEKDWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMY 992 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 993 EMAKSRSEY 1001 >ref|NP_524642.2| nejire CG15319-PB [Drosophila melanogaster] gb|AAF46516.2| CG15319-PB [Drosophila melanogaster] Length = 3276 Score = 89.4 bits (221), Expect = 1e-17 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 3 PAVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIF 57 P N DWR D R ++ L+ + I P S + + L+ A +E+ ++ Sbjct: 936 PGDNEKDWRESVTADLRNHLVHKLV---QAIFPTSDPTTMQDKRMHNLVSYAEKVEKDMY 992 Query: 58 NSAINQEDY 66 A ++ +Y Sbjct: 993 EMAKSRSEY 1001 >pir||T18235 transcription activator GAL11 homolog - yeast (Candida albicans) emb|CAA21993.1| possible regulatory protein [Candida albicans] Length = 1145 Score = 89.0 bits (220), Expect = 2e-17 Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 10 WRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGK 69 WR + RQK + +++TL ++ + + L ++A E+L++ + ++EDYL Sbjct: 23 WRAMYSGEERQKVVQIIINTLTELHGSNPNFNVQRLSKMAQDFEKLVYERSASKEDYLRA 82 Query: 70 ISLKM 74 I +K+ Sbjct: 83 IKMKV 87 >gb|AAH44677.1| Similar to CREB binding protein (Rubinstein-Taybi syndrome) [Xenopus laevis] Length = 1047 Score = 86.7 bits (214), Expect = 6e-17 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 578 RKAWHEHVTQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 634 Query: 62 NQEDY 66 ++++Y Sbjct: 635 SRDEY 639 >gb|AAB31182.1| p300=transcription coactivator {N-terminal} [mice, Peptide Partial, 688 aa] Length = 688 Score = 86.7 bits (214), Expect = 7e-17 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 569 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 625 Query: 62 NQEDY 66 N+ +Y Sbjct: 626 NRAEY 630 >ref|XP_283295.1| similar to E1A-associated protein p300 [Mus musculus] ref|NP_808489.1| hypothetical protein A730011L11 [Mus musculus] dbj|BAC31311.1| unnamed protein product [Mus musculus] Length = 714 Score = 86.7 bits (214), Expect = 7e-17 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 569 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 625 Query: 62 NQEDY 66 N+ +Y Sbjct: 626 NRAEY 630 >ref|NP_001420.1| E1A binding protein p300; E1A-binding protein, 300kD [Homo sapiens] sp|Q09472|P300_HUMAN E1A-associated protein p300 pir||A54277 transcription adaptor protein p300 - human gb|AAA18639.1| p300 protein Length = 2414 Score = 86.0 bits (212), Expect = 1e-16 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 568 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 624 Query: 62 NQEDY 66 N+ +Y Sbjct: 625 NRAEY 629 >ref|XP_235770.1| similar to E1A-associated protein p300 [Rattus norvegicus] Length = 1605 Score = 85.6 bits (211), Expect = 2e-16 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 197 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 253 Query: 62 NQEDY 66 N+ +Y Sbjct: 254 NRAEY 258 >gb|AAH53889.1| Unknown (protein for IMAGE:6151364) [Homo sapiens] Length = 1553 Score = 85.6 bits (211), Expect = 2e-16 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 568 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 624 Query: 62 NQEDY 66 N+ +Y Sbjct: 625 NRAEY 629 >ref|XP_235502.1| similar to E1A-associated protein p300 [Rattus norvegicus] Length = 2156 Score = 85.2 bits (210), Expect = 2e-16 Identities = 14/65 (21%), Positives = 26/65 (39%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 197 RKQWHEDITQDLRNHLVHKLV---QAIFPTPDPAALKDRRMENLVAYARKVEGDMYESAN 253 Query: 62 NQEDY 66 N+ +Y Sbjct: 254 NRAEY 258 >prf||1923401A protein CBP Length = 2441 Score = 84.0 bits (207), Expect = 5e-16 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W + QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 588 RKGWHERVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 644 Query: 62 NQEDY 66 ++++Y Sbjct: 645 SRDEY 649 >ref|NP_004371.1| CREB binding protein [Homo sapiens] sp|Q92793|CBP_HUMAN CREB-binding protein gb|AAC51770.1| CREB-binding protein Length = 2442 Score = 84.0 bits (207), Expect = 5e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 589 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 645 Query: 62 NQEDY 66 ++++Y Sbjct: 646 SRDEY 650 >gb|AAC51331.2| CREB-binding protein [Homo sapiens] Length = 2442 Score = 84.0 bits (207), Expect = 5e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 589 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 645 Query: 62 NQEDY 66 ++++Y Sbjct: 646 SRDEY 650 >pir||S39162 transcription coactivator CREB-binding protein - human Length = 2440 Score = 84.0 bits (207), Expect = 5e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 589 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 645 Query: 62 NQEDY 66 ++++Y Sbjct: 646 SRDEY 650 >pir||S60123 hypothetical protein R10E11.1 - Caenorhabditis elegans Length = 2027 Score = 83.6 bits (206), Expect = 5e-16 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID-----ELMRIAVSLEELIFNSAI 61 T +W Q +D R + L+ K I P +E ++ +L+ A +E+ +F SA Sbjct: 595 TKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFESAN 651 Query: 62 NQEDY 66 ++E+Y Sbjct: 652 DREEY 656 >ref|NP_499161.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis elegans] emb|CAA82353.2| C. elegans CBP-1 protein (corresponding sequence R10E11.1a) [Caenorhabditis elegans] Length = 2045 Score = 83.6 bits (206), Expect = 6e-16 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID-----ELMRIAVSLEELIFNSAI 61 T +W Q +D R + L+ K I P +E ++ +L+ A +E+ +F SA Sbjct: 584 TKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFESAN 640 Query: 62 NQEDY 66 ++E+Y Sbjct: 641 DREEY 645 >ref|NP_499160.1| CBP/p300 homolog CBP-1 (cbp-1) [Caenorhabditis elegans] sp|P34545|CBP1_CAEEL Protein cbp-1 pir||G88564 protein R10E11.1 [imported] - Caenorhabditis elegans emb|CAD18875.1| C. elegans CBP-1 protein (corresponding sequence R10E11.1b) [Caenorhabditis elegans] Length = 2056 Score = 83.6 bits (206), Expect = 6e-16 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGID-----ELMRIAVSLEELIFNSAI 61 T +W Q +D R + L+ K I P +E ++ +L+ A +E+ +F SA Sbjct: 595 TKEWHHQVTKDLRNHLVGKLV---KAIFPEPNQEAMNDNRLKDLIAYARKVEKEMFESAN 651 Query: 62 NQEDY 66 ++E+Y Sbjct: 652 DREEY 656 >sp|P45481|CBP_MOUSE CREB-binding protein pir||S39161 CREB-binding protein - mouse gb|AAB28651.1| CREB-binding protein; CBP [Mus sp.] Length = 2441 Score = 83.6 bits (206), Expect = 7e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 588 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 644 Query: 62 NQEDY 66 ++++Y Sbjct: 645 SRDEY 649 >gb|AAL87531.1| CREB-binding protein [Mus musculus] gb|AAL87532.1| CREB-binding protein [Mus musculus] Length = 2429 Score = 83.6 bits (206), Expect = 7e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 582 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 638 Query: 62 NQEDY 66 ++++Y Sbjct: 639 SRDEY 643 >gb|AAC08447.1| CBP [Homo sapiens] Length = 555 Score = 83.6 bits (206), Expect = 7e-16 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 323 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 379 Query: 62 NQEDY 66 ++++Y Sbjct: 380 SRDEY 384 >ref|NP_178842.1| hypothetical protein [Arabidopsis thaliana] pir||E84491 hypothetical protein At2g10440 [imported] - Arabidopsis thaliana gb|AAD28655.1| hypothetical protein [Arabidopsis thaliana] Length = 935 Score = 78.3 bits (192), Expect = 2e-14 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 4 AVNTGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQ 63 A N DWR+Q + RQK ++ +++ K+ + I++ IA EE ++ A ++ Sbjct: 19 ANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---IASKFEENFYSIATDK 75 Query: 64 E 64 Sbjct: 76 T 76 >pir||S41033 hypothetical protein K03H1.10 - Caenorhabditis elegans (fragment) Length = 316 Score = 76.3 bits (187), Expect = 1e-13 Identities = 16/63 (25%), Positives = 29/63 (45%), Gaps = 6/63 (9%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEG---IDELMRIAVSLEELIFNSAINQ 63 T +W Q D R + L+ K I P + +L A +E+ +F +AI++ Sbjct: 160 TKEWHRQVTNDLRNHIVGKLV---KAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDR 216 Query: 64 EDY 66 ++Y Sbjct: 217 KNY 219 >ref|NP_499201.1| TAZ zinc finger and KIX domain containing protein family member (36.7 kD) [Caenorhabditis elegans] pir||D88569 protein K03H1.10 [imported] - Caenorhabditis elegans emb|CAA82940.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] emb|CAA82665.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] Length = 322 Score = 75.9 bits (186), Expect = 1e-13 Identities = 16/63 (25%), Positives = 29/63 (45%), Gaps = 6/63 (9%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEG---IDELMRIAVSLEELIFNSAINQ 63 T +W Q D R + L+ K I P + +L A +E+ +F +AI++ Sbjct: 166 TKEWHRQVTNDLRNHIVGKLV---KAICPAPEMMNDIRLKDLNAYARKVEKEVFETAIDR 222 Query: 64 EDY 66 ++Y Sbjct: 223 KNY 225 >pdb|1KDX|A Chain A, Kix Domain Of Mouse Cbp (Creb Binding Protein) In Complex With Phosphorylated Kinase Inducible Domain (Pkid) Of Rat Creb (Cyclic Amp Response Element Binding Protein), Nmr 17 Structures Length = 81 Score = 74.4 bits (182), Expect = 3e-13 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDE-----LMRIAVSLEELIFNSAI 61 W QD R ++ L+ + I P + + L+ A +E ++ SA Sbjct: 3 RKGWHEHVTQDLRSHLVHKLV---QAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESAN 59 Query: 62 NQEDY 66 ++++Y Sbjct: 60 SRDEY 64 >dbj|BAC45102.1| OJ1705_C03.24 [Oryza sativa (japonica cultivar-group)] Length = 87 Score = 55.1 bits (132), Expect = 2e-07 Identities = 9/41 (21%), Positives = 20/41 (47%) Query: 23 INALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQ 63 I + L+ + + + +L ++A +EE I+ AI+ Sbjct: 35 IGQTMPILQMKLQTTTSTTLIDLQKVAARIEERIYKIAIDF 75 >ref|NP_586100.1| MADS domain [Encephalitozoon cuniculi] emb|CAD25704.1| MADS domain [Encephalitozoon cuniculi] Length = 776 Score = 40.1 bits (93), Expect = 0.008 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 13 QQPQDSRQKNINALLDTLKK--IVPHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGK 69 Q+ R++ I L LK+ I P I E A+ E+ I+ + ++E+YL Sbjct: 1 MLSQEERKQMILKLFVALKESNIFPGYTPVQIKEA---AIRAEQRIYEESGSKEEYLRG 56 >pir||T01055 hypothetical protein YUP8H12R.38 - Arabidopsis thaliana gb|AAC17068.1| Similar to CREB-binding protein homolog gb|U88570 from D. melanogaster and contains similarity to callus-associated protein gb|U01961 from Nicotiana tabacum. EST gb|W43427 comes from this gene. [Arabidopsis thaliana] Length = 1516 Score = 37.4 bits (86), Expect = 0.047 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDY 66 RQ + + L++ P E + M +A LEE +F A +EDY Sbjct: 51 LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDY 100 >ref|NP_565197.1| p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana] gb|AAG60059.1| p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana] Length = 1654 Score = 37.4 bits (86), Expect = 0.054 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDY 66 RQ + + L++ P E + M +A LEE +F A +EDY Sbjct: 51 LRQAMRIRIFNILQQKQPSPADEASKAKYMDVARRLEEGLFKIANTKEDY 100 >ref|NP_493339.1| KIX domain containing protein family member (80.3 kD) [Caenorhabditis elegans] pir||T23651 hypothetical protein M01E5.6 - Caenorhabditis elegans emb|CAB07643.1| Hypothetical protein M01E5.6 [Caenorhabditis elegans] emb|CAB03290.1| Hypothetical protein M01E5.6 [Caenorhabditis elegans] Length = 702 Score = 37.0 bits (85), Expect = 0.061 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 8 GDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEG---IDELMRIAVSLEELIFNSAINQE 64 +W +D R + LL + + + +L+ A E I ++ +++ Sbjct: 600 KEW---IVEDIRNHMVGKLLKAFWPRIQNVEEMNGELFKKLIANARKCETEILEASNDRD 656 Query: 65 DYLGKISL 72 +Y + L Sbjct: 657 EYYRLMQL 664 >gb|AAP31820.1| CRM1 [Trypanosoma cruzi] Length = 1034 Score = 34.0 bits (77), Expect = 0.57 Identities = 11/46 (23%), Positives = 22/46 (46%), Gaps = 6/46 (13%) Query: 13 QQPQDSRQK------NINALLDTLKKIVPHSGKEGIDELMRIAVSL 52 Q P+ R + +L+ +K++ P + +D LM+IA + Sbjct: 528 QYPRFLRSHPNFLSTVVRKILEFMKELFPGVQEMAVDTLMKIASQV 573 >ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thaliana] dbj|BAB02507.1| CREB-binding protein-like [Arabidopsis thaliana] Length = 1670 Score = 34.0 bits (77), Expect = 0.59 Identities = 15/57 (26%), Positives = 28/57 (48%), Gaps = 1/57 (1%) Query: 12 TQQPQDSRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDYL 67 +Q RQ+ +N L++ P + +L +A LE ++ +A ++EDYL Sbjct: 37 SQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYL 93 >gb|AAM34787.1|AF512558_1 HAC5 [Arabidopsis thaliana] Length = 453 Score = 32.8 bits (74), Expect = 1.1 Identities = 15/57 (26%), Positives = 28/57 (48%), Gaps = 1/57 (1%) Query: 12 TQQPQDSRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDYL 67 +Q RQ+ +N L++ P + +L +A LE ++ +A ++EDYL Sbjct: 6 SQDTLLLRQEMLNRTYAWLQQRQPSKTDDASKAKLSEVAKRLESAMWRTATSKEDYL 62 >ref|NP_680756.1| expressed protein [Arabidopsis thaliana] gb|AAO41883.1| unknown protein [Arabidopsis thaliana] gb|AAO50719.1| unknown protein [Arabidopsis thaliana] Length = 238 Score = 32.8 bits (74), Expect = 1.3 Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGI---DELMRIAVSLEELIFNSAINQ 63 W + + Q R I + + +I S ++ ++L + + EE++++ A ++ Sbjct: 13 RRAWHSDRHQPMRGLLIQEIFRIVCEIHSQSTRKNTEWQEKLPVVVLRAEEIMYSKANSE 72 Query: 64 EDYL 67 +Y+ Sbjct: 73 AEYM 76 >ref|NP_794547.1| lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO58242.1| lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 201 Score = 32.4 bits (73), Expect = 1.5 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 7/52 (13%) Query: 12 TQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIA---VSLEELIFNSA 60 +Q Q+ R I L+ L+++ +DEL A E +A Sbjct: 136 SQVRQEMRNDLIQKLMARLQQL----TPSRLDELQAKADAVAKAEADALEAA 183 >ref|NP_044842.1| unknown [murid herpesvirus 4] emb|CAA72393.1| ORF2 [Murid herpesvirus 4] gb|AAB66427.1| unknown [murid herpesvirus 4] gb|AAF19270.1|AF105037_2 M2 [murid herpesvirus 4] Length = 199 Score = 32.4 bits (73), Expect = 1.8 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 10/72 (13%) Query: 11 RTQQPQDSRQKNINALLDTLK-----KIVPHSGKEGIDELMRIAVSLEELIFNSAINQED 65 RT+ P+ R + N L TLK + P E ++ A S EE I+ +A ++ Sbjct: 81 RTRFPKTIR-RGFNKLRSTLKSPWKPRPSPVPSPEEVNP----AGSPEENIYETANSEPV 135 Query: 66 YLGKISLKMRTM 77 Y+ IS + M Sbjct: 136 YIQPISTRSLMM 147 >ref|ZP_00126130.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a] Length = 224 Score = 32.0 bits (72), Expect = 2.2 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 7/52 (13%) Query: 12 TQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIA---VSLEELIFNSA 60 +Q Q+ R I ++ L+++ +DEL A E +A Sbjct: 159 SQVRQEMRNDLIQKMMARLQQL----TPSRLDELQAKADAVAKAEADALEAA 206 >ref|NP_173115.1| expressed protein [Arabidopsis thaliana] Length = 1706 Score = 32.0 bits (72), Expect = 2.3 Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 1/56 (1%) Query: 18 SRQKNINALLDTLKKIVPHSGKEGID-ELMRIAVSLEELIFNSAINQEDYLGKISL 72 RQ + + L++ P + M +A LEE +F A+ +EDY+ + +L Sbjct: 73 LRQYMQTLVFNMLQQRQPSPADAASKAKYMDVARRLEEGLFKMAVTKEDYMNRSTL 128 >ref|NP_181034.1| hypothetical protein [Arabidopsis thaliana] pir||T00470 XE169 protein homolog F19I3.11 - Arabidopsis thaliana gb|AAC12829.1| unknown protein [Arabidopsis thaliana] Length = 806 Score = 31.6 bits (71), Expect = 2.5 Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 6/65 (9%) Query: 7 TGDWRTQQPQDSRQKNINALLDTLKKI------VPHSGKEGIDELMRIAVSLEELIFNSA 60 G + R +++ + T K + +++ + A ++ F Sbjct: 144 RGKYSRTVAPKKRNGSVSKSVSTPKATEEENFGFESGPEFTLEKFEKYAQDFKDSYFERK 203 Query: 61 INQED 65 N D Sbjct: 204 DNVGD 208 >dbj|BAC45105.1| OJ1705_C03.27 [Oryza sativa (japonica cultivar-group)] Length = 194 Score = 31.6 bits (71), Expect = 2.7 Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 9 DWRTQQPQDSRQKNINALL 27 DWRT+ QD R + + +L Sbjct: 12 DWRTRLGQDIRDRVTHDIL 30 >ref|ZP_00091640.1| hypothetical protein [Azotobacter vinelandii] Length = 583 Score = 31.3 bits (70), Expect = 3.7 Identities = 9/39 (23%), Positives = 18/39 (46%) Query: 35 PHSGKEGIDELMRIAVSLEELIFNSAINQEDYLGKISLK 73 G E + EL+ +A E + +N + + I+L+ Sbjct: 374 GTPGPERLRELVAVARRPERVFWNLEPERAARIRDITLR 412 >ref|NP_509376.1| KIX domain containing protein family member [Caenorhabditis elegans] pir||T16139 hypothetical protein F22F1.3 - Caenorhabditis elegans gb|AAA83283.1| Hypothetical protein F22F1.3 [Caenorhabditis elegans] Length = 295 Score = 31.3 bits (70), Expect = 4.1 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 18 SRQKNINALLDTLKKIVPHSGK-----EGIDELMRIAVSLEELIFNSAINQEDYLGKISL 72 RQ I ++ ++ VP + EL A +E+ F +++Y +++ Sbjct: 70 LRQYMITKIV---REAVPRPNSDAKNDARMIELKEYATFMEKKSFEKVQTKDEYYAELAR 126 Query: 73 KMRTM 77 + +M Sbjct: 127 IILSM 131 >gb|EAA23178.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 305 Score = 30.5 bits (68), Expect = 6.4 Identities = 10/64 (15%), Positives = 25/64 (38%), Gaps = 14/64 (21%) Query: 6 NTGDWRTQQPQD---SRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAIN 62 + WR + + + K I L+ + E + +EE I++ + + Sbjct: 222 DNHYWRNEIELENSTLKNKIIQKLVWK-----------KLGEWVEFENDIEEEIYDESRD 270 Query: 63 QEDY 66 +++Y Sbjct: 271 KKNY 274 >ref|NP_189057.1| expressed protein [Arabidopsis thaliana] Length = 343 Score = 30.1 bits (67), Expect = 7.7 Identities = 10/60 (16%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Query: 10 WRTQQPQDSRQKNINALLDTLKKIVPHSGKEG---IDELMRIAVSLEELIFNSAINQEDY 66 W + + Q R I + + + ++ ++L + + EE++++ A ++E+Y Sbjct: 16 WHSDRHQPIRGSIIRQIFRLAMEAHSAATRKNKEWQEKLPVVVLKAEEIMYSKANSEEEY 75 >ref|ZP_00060980.1| hypothetical protein [Clostridium thermocellum ATCC 27405] Length = 253 Score = 30.1 bits (67), Expect = 8.0 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 9 DWRTQQPQDSRQKNINALLDTLKKIVPHSGKEGIDELMRIAVSLEELIFNSAINQ 63 DW Q D R+ +++ L +I + ++R + +L++ A ++ Sbjct: 2 DWHFQGTNDDREHTKRIIIEYLNRIKAGDDSAREEFILRFRPFILKLVYK-ATDR 55 Database: /local/data/sequences/fasta/nr Posted date: Jun 30, 2003 5:37 PM Number of letters in database: 468,778,868 Number of sequences in database: 1,459,938 Lambda K H 0.311 0.167 0.471 Lambda K H 0.267 0.0510 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 577,136,311 Number of Sequences: 1459938 Number of extensions: 23664943 Number of successful extensions: 49805 Number of sequences better than 10.0: 286 Number of HSP's better than 10.0 without gapping: 158 Number of HSP's successfully gapped in prelim test: 141 Number of HSP's that attempted gapping in prelim test: 49489 Number of HSP's gapped (non-prelim): 317 length of query: 77 length of database: 468,778,868 effective HSP length: 53 effective length of query: 24 effective length of database: 391,402,154 effective search space: 9393651696 effective search space used: 9393651696 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.4 bits) S2: 67 (30.1 bits)