Query SPAC458.04c_ext |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Match_columns 374 No_of_seqs 3 out of 5 Neff 1.7 Searched_HMMs 82867 Date Feb 7 2010 Command /cluster/toolkit/production/bioprogs/hhpred/hhsearch -cpu 4 -v 1 -i /cluster/toolkit/production/tmp/production/226118/9412108.hhm -d /cluster/toolkit/production/databases/hhpred/new_dbs/pdb70_4Feb10/db/pdb.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/pdb_on_hold_4Feb10/db/pdb.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/scop70_1.75/db/scop.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/pfamA_23.0/db/pfamA.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/smart_15Dec09/db/smart.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/panther_4Mar08/db/panther.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/tigrfam_4Mar08/db/tigrfam.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/pirsf_4Mar08/db/pirsf.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/COG_15Dec09/db/COG.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/KOG_15Dec09/db/KOG.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/CATH_4Mar08/db/CATH.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/supfam_4Mar08/db/supfam.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/pfam_15Dec09/db//pfam.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/cd_15Dec09/db/cd.hhm -o /cluster/toolkit/production/tmp/production/226118/9412108.hhr -p 20 -P 20 -Z 100 -B 100 -seq 1 -aliw 80 -local -ssm 2 -norealign -sc 1 -dbstrlen 10000 -cs /cluster/toolkit/production/bioprogs/csblast/data/clusters.prf No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PF05783 DLIC: Dynein light in 98.1 4.6E-05 5.6E-10 79.0 12.0 255 3-291 31-341 (525) 2 PTHR12688 DYNEIN LIGHT INTERME 95.9 0.019 2.3E-07 52.5 4.4 87 200-291 152-240 (415) 3 KOG3905 consensus 87.9 2.4 2.9E-05 45.1 6.5 180 99-281 115-318 (473) 4 1l8yA00 1.10.30.10 45.5 24 0.00029 22.1 1.3 29 90-118 14-42 (91) 5 PF00726 IL10: Interleukin 10 38.9 68 0.00081 30.7 3.6 90 80-188 62-163 (170) 6 pfam08926 DUF1908 Domain of un 32.1 2.6E+02 0.0031 29.7 6.5 117 42-223 115-239 (295) 7 SUPFAM0039045 a.39.4 Hypotheti 26.2 1.1E+02 0.0013 18.6 1.9 25 325-349 59-83 (84) 8 d3dlqi1 a.26.1.3 (I:41-179) In 25.7 2E+02 0.0024 26.9 4.1 97 68-173 25-126 (139) 9 2ilk001 1.20.1250.10 25.6 1.8E+02 0.0022 18.6 2.9 38 335-372 17-56 (115) 10 PF06866 DUF1256: Protein of u 23.8 1.2E+02 0.0014 29.8 2.4 35 2-36 11-48 (173) 11 PIRSF028758 Cyclin_C_H_G 23.7 62 0.00075 31.6 0.8 13 89-101 24-36 (289) 12 d1lvfa_ a.47.2.1 (A:) Syntaxin 20.8 4.4E+02 0.0053 23.0 5.0 60 293-352 40-100 (106) 13 1ed7A00 2.10.10.20 20.5 89 0.0011 16.0 0.7 30 45-74 3-32 (45) No 1 >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR008467 This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo .; GO: 0003774 motor activity Probab=98.13 E-value=4.6e-05 Score=78.98 Aligned_cols=255 Identities=22% Similarity=0.291 Sum_probs=0.0 Q ss_pred hHHHHHHHHHhhcCcccceEEEEec-cCCHHHHHHhcCcccCCCcCCCcCCCCcccccch-hhhhheecccccc------ Q SPAC458.04c_ex 3 ELLEKLLNDLKKKEPKACSIICIGE-DLDIIQCMNEHGCFSGGSYSELSNDCETVNFRGI-AYKCFFTKDQVKG------ 74 (374) Q Consensus 3 ~~LEKl~n~lq~~~~K~~SIl~IG~-~~~~~~~l~k~g~~Sg~s~s~l~~~~~~Vn~~~I-sYeCF~~~~~~kG------ 74 (374) .+|...-....++-|-..+++.+|+ ++|-+-||++----....+. +|+ .|--+-.|++-.. T Consensus 31 ~iLsevst~~~sklp~~k~vlvlGd~~SGKttLlskLqg~e~~~Kg-----------~gL~eY~yl~V~de~rD~~~~~~ 99 (525) T PF05783_consen 31 SILSEVSTRSNSKLPSGKNVLVLGDDGSGKTTLLSKLQGVEETKKG-----------RGLLEYLYLNVHDEDRDASYAYQ 99 (525) T ss_pred HHHHHhhhccccccCCCceeEEecCCCCcHHHHHHHhhccccccCC-----------ccccceeeeeeehhhhhhhhhhh Q ss_pred -------------eehhhcchhHhHHHHHHHHh--hhhhHHHHHHHHHHHHhcC-cceeeeeeeehhhhhcchhhHHHHH Q SPAC458.04c_ex 75 -------------TRLVRLTNYLMLLVNFWQIS--HLTGGLFNFLVSQALNEHG-LDLLWIIMVVAQTLSALVSFPEKLL 138 (374) Q Consensus 75 -------------~r~~~~~~~~~~ii~~WQ~S--~iT~~L~~F~V~QsL~~HG-LD~LWvI~V~~~~~~~~~~F~k~lL 138 (374) +| +++|--- ----+||+| ||+..- -|.|-||-|------+..-=-.+.. T Consensus 100 ~~~~~~~~~p~d~tr-----------~nVWiLDGd~~h~~LLKf----Al~~~~~~dTLvilvlDms~PW~~mesLqkW~ 164 (525) T PF05783_consen 100 LGTAGANLNPSDLTR-----------LNVWILDGDAYHKGLLKF----ALNAESLADTLVILVLDMSRPWTIMESLQKWA 164 (525) T ss_pred ccccccccccccccc-----------cceeEecCcccccccccc----ccCcccccceEEEEEeeccchhHHHHHHHHHH Q ss_pred HHHHhhhHHHhcchHHHHHHHHHhccchHHHHhhcCCccccc-------------cccccee----------------eE Q SPAC458.04c_ex 139 NILRNMKTILINTEETVRNRFEESQNKKLVALLDKNSTTLDI-------------SSGILLN----------------FT 189 (374) Q Consensus 139 ~~LR~~~~v~~ns~~~~r~~F~~~qdK~~~~im~~~STt~~~-------------~~~~~~N----------------FT 189 (374) .+|| --+-+..--.+++.+++.|- ++-.-+|.-.+++ +++---. +- T Consensus 165 ~VLr----ehI~kLki~pEe~~e~e~kl-~~~wQeY~Ep~~~~~~Spqrr~~~~~s~~d~~v~LPL~~g~Lt~NLGip~~ 239 (525) T PF05783_consen 165 SVLR----EHIDKLKIDPEEMKEMEQKL-VKEWQEYVEPGEDLDGSPQRRTTRSSSSDDESVLLPLGEGTLTENLGIPIV 239 (525) T ss_pred HHHH----HHHhhcCCCHHHHHHHHHHH-HHHHHhhcCCCCCCCCCcccccCCCCccccccccccCCcccccccCCceEE Q ss_pred EEecCcc---cccccccccchHHHHHHHHHHHHHHhcchhheEEEecCCcchhhHHHHHHHHHhhhcccccccccccccc Q SPAC458.04c_ex 190 VVLKQLK---HALGLHTSVDNSQEFILQFLRTTLLSVPTSSIVSISADPTSWNNLNVLMKYNFMFQKFKPRDFHAQTIQS 266 (374) Q Consensus 190 viL~Q~~---~~~~~~s~~D~~kdFI~Qf~R~~LL~iPtSS~m~lS~nP~SWdN~~~Ll~~~~l~~~~~~~n~Ha~Ti~n 266 (374) ||...-| .--+-+..-|+--|||||++|+..|.-- .+++|-|.--. -|...|.+|-.-----.|-+--|+-|+- T Consensus 240 VVctk~D~i~~LEKe~d~~eE~fDfIqq~lR~fcL~yG-AsLiYTSvKe~--kN~dLl~kYi~HrlYg~pf~~~a~vvek 316 (525) T PF05783_consen 240 VVCTKSDAISVLEKEHDYKEEHFDFIQQHLRRFCLQYG-ASLIYTSVKEN--KNIDLLYKYIVHRLYGFPFTSPALVVEK 316 (525) T ss_pred EEeeCCchhhhhhhccCccHHHHHHHHHHHHHHHHhcC-ceeEEeecccc--ccHHHHHHHHHHhhcCCccccccceeec Q ss_pred CceecCchHHHHHHHHhcchhheee Q SPAC458.04c_ex 267 ETMFIPPCWDTISKIQSVNHEFNIA 291 (374) Q Consensus 267 d~l~IPPCWDTmqKIQnVN~kF~~~ 291 (374) |..|||.-||.+.||+-..--|++. T Consensus 317 d~vfiPaGwD~~kKI~IL~EN~~~~ 341 (525) T PF05783_consen 317 DAVFIPAGWDNLKKIGILHENFQTV 341 (525) T ss_pred cceecccCccchhhhhhhhhccccc No 2 >PTHR12688 DYNEIN LIGHT INTERMEDIATE CHAIN; InterPro: IPR008467 This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo .; GO: 0003774 motor activity. Probab=95.91 E-value=0.019 Score=52.48 Aligned_cols=87 Identities=24% Similarity=0.437 Sum_probs=0.0 Q ss_pred ccccccchHHHHHHHHHHHHHHhcchhheEEEecCCcchhhHHHHHHHHHhhhcccccccc--ccccccCceecCchHHH Q SPAC458.04c_ex 200 GLHTSVDNSQEFILQFLRTTLLSVPTSSIVSISADPTSWNNLNVLMKYNFMFQKFKPRDFH--AQTIQSETMFIPPCWDT 277 (374) Q Consensus 200 ~~~s~~D~~kdFI~Qf~R~~LL~iPtSS~m~lS~nP~SWdN~~~Ll~~~~l~~~~~~~n~H--a~Ti~nd~l~IPPCWDT 277 (374) +.|.--|+-=||||+++|...|.. -.+++|-|.. .+-|.-|=|-.+-++.-|-.|. |.-|+.|..|||+-||. T Consensus 152 ke~dyrdehfDfiq~~lR~fcL~y-ga~L~ytsvk----e~kN~dLlykYivh~~yGf~f~~~a~VvekdavfiPaGWD~ 226 (415) T PTHR12688 152 KEHDYRDEHFDFIQSHLRKFCLQY-GAALIYTSVK----EEKNIDLLYKYIVHKLYGFPFTIPALVVEKDAVFIPAGWDN 226 (415) T ss_pred hhccchHHHHHHHHHHHHHHHHHh-hhhhhhhhhh----hhhhHHHHHHHHHHHhccccccchhheeeeeeeeecCCCCc Q ss_pred HHHHHhcchhheee Q SPAC458.04c_ex 278 ISKIQSVNHEFNIA 291 (374) Q Consensus 278 mqKIQnVN~kF~~~ 291 (374) ..||.-..--|.+. T Consensus 227 ~kKI~il~Enf~~~ 240 (415) T PTHR12688 227 EKKIGILHENFTTV 240 (415) T ss_pred HHHHHHHhcccccc No 3 >KOG3905 consensus Probab=87.94 E-value=2.4 Score=45.15 Aligned_cols=180 Identities=21% Similarity=0.236 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHhcCcceeeeeeeeh-hhhhcchhhHHHHHHHHHhhhH-------HHhcchHHHHHHHHHhccchHHHH Q SPAC458.04c_ex 99 GLFNFLVSQALNEHGLDLLWIIMVVA-QTLSALVSFPEKLLNILRNMKT-------ILINTEETVRNRFEESQNKKLVAL 170 (374) Q Consensus 99 ~L~~F~V~QsL~~HGLD~LWvI~V~~-~~~~~~~~F~k~lL~~LR~~~~-------v~~ns~~~~r~~F~~~qdK~~~~i 170 (374) +||+|-+...---|.|-.|-+-|-+- -.++++.-+|.-+-|-...|++ .-|.-+..|.+-.+.-++-|--.. T Consensus 115 ~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~ 194 (473) T KOG3905 115 GLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQ 194 (473) T ss_pred hhhhhccCccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcccCCCCCcc Q ss_pred hhcCCcccccccccceeeE------------EEecCcccc----cccccccchHHHHHHHHHHHHHHhcchhheEEEecC Q SPAC458.04c_ex 171 LDKNSTTLDISSGILLNFT------------VVLKQLKHA----LGLHTSVDNSQEFILQFLRTTLLSVPTSSIVSISAD 234 (374) Q Consensus 171 m~~~STt~~~~~~~~~NFT------------viL~Q~~~~----~~~~s~~D~~kdFI~Qf~R~~LL~iPtSS~m~lS~n 234 (374) |..--+-.+++-.-++-.+ +|.----++ -+-|---|+--||||+.+|..-|..-+ +++|-|.. T Consensus 195 ~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvK 273 (473) T KOG3905 195 RRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVK 273 (473) T ss_pred cccccccCcccccccccCCCCchhhcCCCcEEEEEeccchhhhhhhccchhHHHHHHHHHHHHHHHHhcCc-eEEEeecc Q ss_pred CcchhhHHHHHHHHHhhhccccccccccccccCceecCchHHHHHHH Q SPAC458.04c_ex 235 PTSWNNLNVLMKYNFMFQKFKPRDFHAQTIQSETMFIPPCWDTISKI 281 (374) Q Consensus 235 P~SWdN~~~Ll~~~~l~~~~~~~n~Ha~Ti~nd~l~IPPCWDTmqKI 281 (374) -+ .|...|.||-.-----.|-.--|..|+-|..|||.-||.-.|| T Consensus 274 E~--KNidllyKYivhr~yG~~fttpAlVVEkdaVfIPAGWD~eKKI 318 (473) T KOG3905 274 ET--KNIDLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWDNEKKI 318 (473) T ss_pred cc--cchHHHHHHHHHhhcCcccCCceeEEeeceEEeccCCCcccce No 4 >1l8yA00 1.10.30.10 Probab=45.46 E-value=24 Score=22.07 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=0.0 Q ss_pred HHHHhhhhhHHHHHHHHHHHHhcCcceee Q SPAC458.04c_ex 90 FWQISHLTGGLFNFLVSQALNEHGLDLLW 118 (374) Q Consensus 90 ~WQ~S~iT~~L~~F~V~QsL~~HGLD~LW 118 (374) +||.|.|.+-|-+|--...-...+++..| T Consensus 14 ~w~~~~~g~yla~~~~dr~~a~~~~~~~w 42 (91) T 1l8yA00 14 IWQQSVIGDYLARFKNDRVKALKAMEATW 42 (91) T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHhhhh No 5 >PF00726 IL10: Interleukin 10 This family is a subset of the SCOP family; InterPro: IPR000098 Interleukin-10 (IL-10) is a protein that inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells. Structurally, IL-10 is a protein of about 160 amino acids that contains four conserved cysteines involved in disulphide bonds . IL-10 is highly similar to the Human herpesvirus 4 (Epstein-Barr virus) BCRF1 protein which inhibits the synthesis of gamma-interferon and to Equid herpesvirus 2 (Equine herpesvirus 2) protein E7. It is also similar, but to a lesser degree, with human protein mda-7 , a protein which has antiproliferative properties in human melanoma cells. Mda-7 only contains two of the four cysteines of IL-10.; GO: 0005125 cytokine activity, 0006955 immune response, 0005576 extracellular region; PDB: 1y6k_L 1j7v_L 1inr 1ilk 1lk3_B 2ilk 1y6m_L 1y6n_L 1vlk 1lqs_M .... Probab=38.93 E-value=68 Score=30.74 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=0.0 Q ss_pred cchhHhHHHHHHHHhhhhhHHHHHHHH----HHHHhcCcceeeeeeeehhhhhcchhhHHHHHHHHHhhhHH-----Hhc Q SPAC458.04c_ex 80 LTNYLMLLVNFWQISHLTGGLFNFLVS----QALNEHGLDLLWIIMVVAQTLSALVSFPEKLLNILRNMKTI-----LIN 150 (374) Q Consensus 80 ~~~~~~~ii~~WQ~S~iT~~L~~F~V~----QsL~~HGLD~LWvI~V~~~~~~~~~~F~k~lL~~LR~~~~v-----~~n 150 (374) |+.-+.+.+.--..-+.+..+++|.+- |+.+ ......+..-+.++.|..+-..|..- |.| T Consensus 62 L~~~ll~~~k~~~gC~~l~ell~FYLe~VlP~a~~-----------~~p~~k~~v~sl~~~l~~L~~~lr~Ch~~l~Cen 130 (170) T PF00726_consen 62 LDESLLEDFKGPLGCQALSELLQFYLEEVLPQAEN-----------HGPDIKEHVSSLGESLKTLKKDLRRCHRFLPCEN 130 (170) T ss_dssp STHHHHHHHHSTTHHHHHHHHHHHHHHTHHHHHHC-----------HSGGGHHHHHHHHHHHHHHHHHHHTSTTCCGGGC T ss_pred cchHHHHhccchHHHHHHHHHHHHHHHHHcccccc-----------CCcccccchhHHHHHHHHHHHHHhhhhhhccccC Q ss_pred ---chHHHHHHHHHhccchHHHHhhcCCcccccccccceee Q SPAC458.04c_ex 151 ---TEETVRNRFEESQNKKLVALLDKNSTTLDISSGILLNF 188 (374) Q Consensus 151 ---s~~~~r~~F~~~qdK~~~~im~~~STt~~~~~~~~~NF 188 (374) ..+.+++.|+++|+|...+-|. |+|+|||+ T Consensus 131 kskav~qik~~~~kl~ekGv~KAmg--------ElDil~ny 163 (170) T PF00726_consen 131 KSKAVEQIKSTFEKLQEKGVYKAMG--------ELDILINY 163 (170) T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHH--------THHHHHHH T ss_pred CChHHHHHHHHHhhhhhhhHHhhHH--------HHHHHHHH No 6 >pfam08926 DUF1908 Domain of unknown function (DUF1908). This domain is found in a set of hypothetical/structural eukaryotic proteins. Probab=32.09 E-value=2.6e+02 Score=29.71 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=0.0 Q ss_pred cCCCcCCCcCCCCcccccchhhhhheecccccceehhhcchhHhHHHHH--------HHHhhhhhHHHHHHHHHHHHhcC Q SPAC458.04c_ex 42 SGGSYSELSNDCETVNFRGIAYKCFFTKDQVKGTRLVRLTNYLMLLVNF--------WQISHLTGGLFNFLVSQALNEHG 113 (374) Q Consensus 42 Sg~s~s~l~~~~~~Vn~~~IsYeCF~~~~~~kG~r~~~~~~~~~~ii~~--------WQ~S~iT~~L~~F~V~QsL~~HG 113 (374) +.-..++...|++||.-+.+--|-|---.+---|| |.++|+- -....+.||.++|..||-+.+ T Consensus 115 ~Sp~rs~~~~D~eIvmmN~vYKERFPKAt~QMEer-------L~~fi~en~~~~~~~~~~~~ladgil~FvhHQiiEl-- 185 (295) T pfam08926 115 SSPSRSPIEYDSEIVNMNTVYKERFPKATQQMEER-------LSHFIAENKEAVMDSRRSTVISDGIVRFVHHQVLEM-- 185 (295) T ss_pred CCCCCCCCCCCcceeeehhhhhhhCchHHHHHHHH-------HHHHHHhccccccCCcccCcchhhHHHHHHHHHHHH-- Q ss_pred cceeeeeeeehhhhhcchhhHHHHHHHHHhhhHHHhcchHHHHHHHHHhccchHHHHhhcCCcccccccccceeeEEEec Q SPAC458.04c_ex 114 LDLLWIIMVVAQTLSALVSFPEKLLNILRNMKTILINTEETVRNRFEESQNKKLVALLDKNSTTLDISSGILLNFTVVLK 193 (374) Q Consensus 114 LD~LWvI~V~~~~~~~~~~F~k~lL~~LR~~~~v~~ns~~~~r~~F~~~qdK~~~~im~~~STt~~~~~~~~~NFTviL~ 193 (374) |.+.|+--+ .----..-|.|++.|-++-+ T Consensus 186 --------------------ARDCL~KS~--------~~LiTs~YF~Else~LE~LL----------------------- 214 (295) T pfam08926 186 --------------------ARDCLHKSK--------AKLITSRYFYEMSENLERLL----------------------- 214 (295) T ss_pred --------------------HHHHHHHHH--------hcchhhHHHHHHHHHHHHHH----------------------- Q ss_pred CcccccccccccchHHHHHHHHHHHHHHhc Q SPAC458.04c_ex 194 QLKHALGLHTSVDNSQEFILQFLRTTLLSV 223 (374) Q Consensus 194 Q~~~~~~~~s~~D~~kdFI~Qf~R~~LL~i 223 (374) .+++.--++.-.||.+.+|.+|+.| T Consensus 215 -----~ea~ekS~e~~~~i~~lVkKLLlII 239 (295) T pfam08926 215 -----NETQEKSPEAAEELSGLVKKLLLII 239 (295) T ss_pred -----HHHHhcCHHHHHHHHHHHHHHHhee No 7 >SUPFAM0039045 a.39.4 Hypothetical protein MTH865 (69025) SCOP seed sequence: d1iioa_; InterPro: IPR009108. Probab=26.25 E-value=1.1e+02 Score=18.58 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=0.0 Q ss_pred cccCCCCcCchhHHHHHHHHHHhhh Q SPAC458.04c_ex 325 SKISDGDIPYKSHQVFLQELQNKYS 349 (374) Q Consensus 325 q~I~d~diP~KSHQ~FL~EL~NKys 349 (374) ..+.++|+|+++...+...+.++.. T Consensus 59 ~~~~~~~fP~~~~~~~~~~~~~~~~ 83 (84) T SUPFAM0039045 59 KLLTDKDFPFKDAEDLADDLVESLG 83 (84) T ss_pred hhhccccCCccchHHHHHHHHhhcc No 8 >d3dlqi1 a.26.1.3 (I:41-179) Interleukin-22 (IL-22) {Human (Homo sapiens) [TaxId: 9606]} Probab=25.66 E-value=2e+02 Score=26.88 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=0.0 Q ss_pred ecccccceehhhcchhHhHHHHHHHHhhhhhHHHHHHHHHHHHhcCcceeeeeeeehhhhhcchhhHHHHHHHHHhhhHH Q SPAC458.04c_ex 68 TKDQVKGTRLVRLTNYLMLLVNFWQISHLTGGLFNFLVSQALNEHGLDLLWIIMVVAQTLSALVSFPEKLLNILRNMKTI 147 (374) Q Consensus 68 ~~~~~kG~r~~~~~~~~~~ii~~WQ~S~iT~~L~~F~V~QsL~~HGLD~LWvI~V~~~~~~~~~~F~k~lL~~LR~~~~v 147 (374) +.|+..+.||.+ ..+.+=+.--..-|++..+++|.+---+..|+-+ .+-..++...+-..+-.-||.-+.- T Consensus 25 ~~D~~~dvrLL~--~~ll~~vk~~~~C~~~~~lL~FYL~~Vl~~~~~~-------~~~~i~sl~n~l~~l~~~L~~C~~~ 95 (139) T d3dlqi1 25 LADNNTDVRLIG--EKLFHGVSMSERCYLMKQVLNFTLEEVLFPQSDR-------FQPYMQEVVPFLARLSNRLSTCHIE 95 (139) T ss_dssp HTCCCTTCCCSS--GGGGTTCCGGGHHHHHHHHHHHHHHHTTTTTTTS-------STTHHHHHHHHHHHHHHHHC----- T ss_pred hhccccchhhcC--HHHHhhcccccccHHHHHHHHHHHHHhccccccc-------ccchHHHHHHHHHHHHHHHHhcccc Q ss_pred H-----hcchHHHHHHHHHhccchHHHHhhc Q SPAC458.04c_ex 148 L-----INTEETVRNRFEESQNKKLVALLDK 173 (374) Q Consensus 148 ~-----~ns~~~~r~~F~~~qdK~~~~im~~ 173 (374) + ++..+.+++.|.+++.|-..+-|.+ T Consensus 96 ~~ce~~~~~v~~i~~~~~kL~e~g~~KAiGE 126 (139) T d3dlqi1 96 GDDLHIQRNVQKLKDTVKKLGESGEIKAIGE 126 (139) T ss_dssp ----CHHHHHHHHHHHHHHHTHHHHHHHHHT T ss_pred cCchhhHHHHHHHHHHHHHHHhhhHHHHHHH No 9 >2ilk001 1.20.1250.10 Probab=25.62 E-value=1.8e+02 Score=18.61 Aligned_cols=38 Identities=34% Similarity=0.523 Sum_probs=0.0 Q ss_pred hhHHHHHHHHHHhhhhhccc--CcccchHhhhhHHHHHHh Q SPAC458.04c_ex 335 KSHQVFLQELQNKYSEIKTY--SSNKLNKSSIKSSLWKDL 372 (374) Q Consensus 335 KSHQ~FL~EL~NKys~~k~y--~qd~i~~ssI~Sni~ke~ 372 (374) .+....++||+..|..++.+ ..|.....-...+++.+. T Consensus 17 ~~~~~~l~~lr~~~~~~~~~~~~~d~~~~~l~~~~~~~~~ 56 (115) T 2ilk001 17 ESLPGLLKELRAAFSEVKEFLQSKDDLNVLLLSESLLEEL 56 (115) T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHhh No 10 >PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown. Probab=23.77 E-value=1.2e+02 Score=29.77 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=0.0 Q ss_pred chHHHHHHHHHhhcC---cccceEEEEeccCCHHHHHH Q SPAC458.04c_ex 2 DELLEKLLNDLKKKE---PKACSIICIGEDLDIIQCMN 36 (374) Q Consensus 2 d~~LEKl~n~lq~~~---~K~~SIl~IG~~~~~~~~l~ 36 (374) +.+-+-|++.+++-. .++--++|||+|--.-|||| T Consensus 11 ~~l~~~L~~~l~~~~~~~~r~iVivCIGTDRstGDsLG 48 (173) T PF06866_consen 11 EELANALSSLLKKLIKEPNREIVIVCIGTDRSTGDSLG 48 (173) T ss_pred HHHHHHHHHHhhhhcccCCCCEEEEEecCCccccccch No 11 >PIRSF028758 Cyclin_C_H_G Probab=23.74 E-value=62 Score=31.63 Aligned_cols=13 Identities=62% Similarity=0.994 Sum_probs=0.0 Q ss_pred HHHHHhhhhhHHH Q SPAC458.04c_ex 89 NFWQISHLTGGLF 101 (374) Q Consensus 89 ~~WQ~S~iT~~L~ 101 (374) |||||||.+--+| T Consensus 24 NfW~SSh~~Q~~L 36 (289) T PIRSF028758 24 NFWQSSHLKQLLL 36 (289) T ss_pred hhhhhhhhhhhhc No 12 >d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=20.78 E-value=4.4e+02 Score=23.01 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=0.0 Q ss_pred hHHhhhHHHHHhh-HHHHHHHHHHhhhhhcccccccCCCCcCchhHHHHHHHHHHhhhhhc Q SPAC458.04c_ex 293 FKQTAKNFYDTLD-ISLLLGLFDKSISMLNCHSSKISDGDIPYKSHQVFLQELQNKYSEIK 352 (374) Q Consensus 293 ~~~atKn~~~~~e-~~~L~~~ye~SI~~~~~~sq~I~d~diP~KSHQ~FL~EL~NKys~~k 352 (374) ++.+++.|...+. +..-+.=++++|.+-..+..|-.-++---..|++|+.+.+++...+| T Consensus 40 ~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l~~~ei~~Rr~fi~~~~~~I~~~~ 100 (106) T d1lvfa_ 40 IDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDATELSIRKAFITSTRQIVRDMK 100 (106) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHH No 13 >1ed7A00 2.10.10.20 Probab=20.49 E-value=89 Score=16.00 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=0.0 Q ss_pred CcCCCcCCCCcccccchhhhhheecccccc Q SPAC458.04c_ex 45 SYSELSNDCETVNFRGIAYKCFFTKDQVKG 74 (374) Q Consensus 45 s~s~l~~~~~~Vn~~~IsYeCF~~~~~~kG 74 (374) .....+.....|...|..|.|...|....| T Consensus 3 ~~~~~y~~g~~v~y~g~~y~~~~~h~~~~~ 32 (45) T 1ed7A00 3 KEGTAYKAGDLVTYNGKSYKCLQAHTALAG 32 (45) T ss_pred ccccccccCceeeeCCcceEEeeccccccc Done!