Query Fun_So_SPAC458.04c Command /cluster/toolkit/production/bioprogs/hhpred/hhsearch -cal -cpu 4 -v 1 -i /cluster/toolkit/production/tmp/production/94958/6911912.hhm -d /cluster/toolkit/production/databases/hhpred/new_dbs/pdb70_27Dec07/db/pdb.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/scop70_1.72pre/db/scop.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/scop70_1.71/db/scop.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/pfamA_22.0/db/pfamA.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/smart_18Apr07/db/smart.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/panther_13Dec06/db/panther.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/tigrfam_13Dec06/db/tigrfam.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/pirsf_13Dec06/db/pirsf.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/COG_18Apr07/db/COG.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/KOG_18Apr07/db/KOG.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/CATH_13Dec06/db/CATH.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/supfam_13Dec06/db/supfam.hmm /cluster/toolkit/production/databases/hhpred/new_dbs/pfam_18Apr07/db//pfam.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/cd_18Apr07/db/cd.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/test56/db/test56.hhm /cluster/toolkit/production/databases/hhpred/new_dbs/test18/db/test18.hhm -o /cluster/toolkit/production/tmp/production/94958/6911912.hhr -p 20 -P 20 -Z 100 -B 100 -seq 1 -aliw 80 -local -ssm 2 -norealign -sc 1 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 pfam05783 DLIC Dynein light in 100.0 6.5E-40 7E-45 288.4 7.9 132 158-315 230-361 (475) 2 PF05783 DLIC: Dynein light in 100.0 1.2E-37 1.3E-42 273.2 7.4 129 163-315 253-381 (525) 3 KOG3905 Dynein light intermedi 100.0 2.8E-37 2.9E-42 270.9 6.2 127 163-315 240-366 (473) 4 PTHR12688 DYNEIN LIGHT INTERME 100.0 9.1E-36 9.5E-41 260.8 5.1 127 163-315 152-278 (415) 5 KOG3929 Uncharacterized conser 96.4 0.051 5.3E-07 36.3 7.7 184 61-273 115-304 (363) 6 PTHR13236 DYNEIN 2 LIGHT INTER 68.4 8.9 9.3E-05 21.4 2.1 74 170-251 233-306 (397) 7 PIRSF001662 Rnase_inhibitor 40.5 17 0.00017 19.5 -0.3 44 78-121 35-93 (96) 8 PTHR23123 PHD/F-BOX CONTAINING 36.7 84 0.00088 14.9 2.8 75 166-243 238-312 (1109) 9 COG1422 Predicted membrane pro 25.9 6.1E+02 0.0064 9.1 5.7 75 57-133 25-102 (201) 10 KOG4346 Uncharacterized conser 20.9 6.1E+02 0.0064 9.1 4.9 143 32-180 193-375 (849) 11 PIRSF036510 PDH_fung 20.0 2.1E+02 0.0022 12.3 2.3 29 165-198 148-177 (456) No 1 >pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo. Probab=100.00 E-value=6.5e-40 Score=288.35 Aligned_columns=132 Identities=23% Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEE Q ss_conf 76555222455126899999999998641861378864065651468899887401331122168876563441145135 Q Fun_So_SPAC458 158 IDDENKTFSMNDDMKDFIQQFIRSLLLLIPMSSLMYLSTNPCSWDNFKSLLNLYLLNDNPISLQENHHTITSNTIDNDRL 237 (316) Q Consensus 158 ld~a~Keh~~~De~~DFIqQfLRTvLLk~~GASLiYTStkp~s~~NL~~Liky~L~i~sllk~~~~~h~~~AnvIDrD~v 237 (316) ++.-.|||+|+||||||||||||++||+ |||||||||+++ .+||++||+|.+| +.|++||+.+|+|+|||+| T Consensus 230 ie~LEKe~~ykeE~fDfIqq~LR~~cLq-YGAsLiYTS~ke--~kNldlLykYl~H-----rlYgfpf~~~a~VvekDaI 301 (475) T pfam05783 230 MSVLEKEHDYRDEHFDFIQSHLRKFCLQ-YGAALIYTSVKE--TKNIDLLYKYIVH-----RSYGFPFTTPALVVEKDAV 301 (475) T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCC--CCCHHHHHHHHHH-----HHHCCCCCCCCCEEEHHEE T ss_conf 3333201566436799999999999987-097589854776--4238999999998-----8607654562200100003 Q ss_pred EECCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHC Q ss_conf 865887703565100466436665100131023332221026610144305753334622025775304788887605 Q Fun_So_SPAC458 238 LIPPCWDTMQKIQNVNLKFCTIVVDLATKNLHQVFETNDLITCYESIFHNQGDSQQIPDNELDFPCKSHQQFLKELRN 315 (316) Q Consensus 238 lIPagWDSw~KIrvI~E~F~~~v~eq~~kn~~dt~d~~~l~t~~eSi~~~~~~ssqI~d~eldi~~ks~Q~fLqeLqn 315 (316) |||+|||||+||+||+|+|.+.+.| |.||+.+..++.+...| |.+|+++|+|+||.++|. T Consensus 302 fIPsGWDn~kKI~Il~Enf~~~k~~-------~~~ed~i~kp~~rk~~~-----------~~ei~aeddQ~Fl~k~q~ 361 (475) T pfam05783 302 FIPAGWDNEKKIDILHENFPTVKAE-------DAYEDIITKPPVRKVVH-----------EKEIEAEDDQAFLMKLQS 361 (475) T ss_pred EECCCCCCHHHHHHHHCCCCCCCCC-------CCCCCCCCCCCCHHHHH-----------HHHHCCCHHHHHHHHHHH T ss_conf 4058888145567543365435787-------64223447884023333-----------332000127899999999 No 2 >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR008467 This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo .; GO: 0003774 motor activity Probab=100.00 E-value=1.2e-37 Score=273.19 Aligned_columns=129 Identities=26% Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEECCC Q ss_conf 22245512689999999999864186137886406565146889988740133112216887656344114513586588 Q Fun_So_SPAC458 163 KTFSMNDDMKDFIQQFIRSLLLLIPMSSLMYLSTNPCSWDNFKSLLNLYLLNDNPISLQENHHTITSNTIDNDRLLIPPC 242 (316) Q Consensus 163 Keh~~~De~~DFIqQfLRTvLLk~~GASLiYTStkp~s~~NL~~Liky~L~i~sllk~~~~~h~~~AnvIDrD~vlIPag 242 (316) |||+|+||||||||||||++||+ |||+|+|||+++ .+||++||+|.+| +.|++||+.+|.|+|+|+||||+| T Consensus 253 Ke~d~kdE~fDfIqq~lR~fcL~-yGAsLiYTSvKe--~kN~dllykYi~H-----rlYgf~f~~~a~vvekdavfiPaG 324 (525) T PF05783_consen 253 KEHDYKDEHFDFIQQHLRRFCLQ-YGASLIYTSVKE--EKNIDLLYKYIVH-----RLYGFPFKTPAQVVEKDAVFIPAG 324 (525) T ss_pred HCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEECCC--CCCHHHHHHHHHH-----HHCCCCCCCCCEEEECCCEEECCC T ss_conf 20475277899999999999976-074046740455--2108999999988-----760775577430341000120367 Q ss_pred CCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHC Q ss_conf 7703565100466436665100131023332221026610144305753334622025775304788887605 Q Fun_So_SPAC458 243 WDTMQKIQNVNLKFCTIVVDLATKNLHQVFETNDLITCYESIFHNQGDSQQIPDNELDFPCKSHQQFLKELRN 315 (316) Q Consensus 243 WDSw~KIrvI~E~F~~~v~eq~~kn~~dt~d~~~l~t~~eSi~~~~~~ssqI~d~eldi~~ks~Q~fLqeLqn 315 (316) ||+.+||.|++|+|.+++.| |.||+.+..+|.++..||- |.+|+|+|+|+||.++|+ T Consensus 325 wDn~kKI~Il~En~~~~K~d-------d~~ed~i~kpp~rk~v~~r---------e~ei~aEddQ~FL~k~qs 381 (525) T PF05783_consen 325 WDNLKKISILHENFQTVKPD-------DPYEDIITKPPVRKLVHNR---------EKEIQAEDDQVFLMKQQS 381 (525) T ss_pred CCCHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCCCHHHHH---------HHHHHCCCHHHHHHHHHH T ss_conf 65113334432033446665-------4323321268633001122---------455411206899999999 No 3 >KOG3905 Dynein light intermediate chain [Cell motility] Probab=100.00 E-value=2.8e-37 Score=270.87 Aligned_columns=127 Identities=24% Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEECCC Q ss_conf 22245512689999999999864186137886406565146889988740133112216887656344114513586588 Q Fun_So_SPAC458 163 KTFSMNDDMKDFIQQFIRSLLLLIPMSSLMYLSTNPCSWDNFKSLLNLYLLNDNPISLQENHHTITSNTIDNDRLLIPPC 242 (316) Q Consensus 163 Keh~~~De~~DFIqQfLRTvLLk~~GASLiYTStkp~s~~NL~~Liky~L~i~sllk~~~~~h~~~AnvIDrD~vlIPag 242 (316) |||+|+|+||||||||||.|||+ |||+|+|||+|+ .+||++||||.+| +.|++||++||.|||||+|||||| T Consensus 240 ke~eyrDehfdfiq~~lRkFCLr-~GaaLiyTSvKE--~KNidllyKYivh-----r~yG~~fttpAlVVEkdaVfIPAG 311 (473) T KOG3905 240 KEHEYRDEHFDFIQSHLRKFCLR-YGAALIYTSVKE--TKNIDLLYKYIVH-----RSYGFPFTTPALVVEKDAVFIPAG 311 (473) T ss_pred HCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEECCC--CCCHHHHHHHHHH-----HHCCCCCCCHHHEEECCEEEECCC T ss_conf 20100167899999999999986-063025541112--4556888888887-----641553135001232031463046 Q ss_pred CCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHC Q ss_conf 7703565100466436665100131023332221026610144305753334622025775304788887605 Q Fun_So_SPAC458 243 WDTMQKIQNVNLKFCTIVVDLATKNLHQVFETNDLITCYESIFHNQGDSQQIPDNELDFPCKSHQQFLKELRN 315 (316) Q Consensus 243 WDSw~KIrvI~E~F~~~v~eq~~kn~~dt~d~~~l~t~~eSi~~~~~~ssqI~d~eldi~~ks~Q~fLqeLqn 315 (316) ||+.+||.||+|+|.++++| |-+++-+..+|.+...| |.+|+++|+|+||.++|+ T Consensus 312 WD~eKKI~Il~En~~~vkae-------d~y~d~itkpp~Rk~v~-----------ekei~aEddQaFL~k~q~ 366 (473) T KOG3905 312 WDNEKKIDILHENFPTVKAE-------DNYEDIITKPPVRKVVH-----------EKEIEAEDDQAFLMKLQS 366 (473) T ss_pred CCCCCHHHHHHCCCCCCCCC-------CCCCCCCCCCCCHHHHH-----------HHHHHHHHHHHHHHHHHH T ss_conf 68630022100035677877-------65332436884015666-----------665410137899999999 No 4 >PTHR12688 DYNEIN LIGHT INTERMEDIATE CHAIN; InterPro: IPR008467 This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo .; GO: 0003774 motor activity. Probab=100.00 E-value=9.1e-36 Score=260.78 Aligned_columns=127 Identities=24% Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEECCC Q ss_conf 22245512689999999999864186137886406565146889988740133112216887656344114513586588 Q Fun_So_SPAC458 163 KTFSMNDDMKDFIQQFIRSLLLLIPMSSLMYLSTNPCSWDNFKSLLNLYLLNDNPISLQENHHTITSNTIDNDRLLIPPC 242 (316) Q Consensus 163 Keh~~~De~~DFIqQfLRTvLLk~~GASLiYTStkp~s~~NL~~Liky~L~i~sllk~~~~~h~~~AnvIDrD~vlIPag 242 (316) |||+|+||||||||++||++||+ |||+|+|||+|+ .+||++||||..| +.||++|+++|.|||||+|||||| T Consensus 152 ke~dyrdehfDfiq~~lR~fcL~-yga~L~ytsvke--~kN~dLlykYivh-----~~yGf~f~~~a~VvekdavfiPaG 223 (415) T PTHR12688 152 KEHDYRDEHFDFIQSHLRKFCLQ-YGAALIYTSVKE--EKNIDLLYKYIVH-----KLYGFPFTIPALVVEKDAVFIPAG 223 (415) T ss_pred HHCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHH-----HHCCCCCCCHHHEEEEEEEEECCC T ss_conf 43031288999999999999998-402531101001--3348999999988-----860654344011122000451689 Q ss_pred CCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHC Q ss_conf 7703565100466436665100131023332221026610144305753334622025775304788887605 Q Fun_So_SPAC458 243 WDTMQKIQNVNLKFCTIVVDLATKNLHQVFETNDLITCYESIFHNQGDSQQIPDNELDFPCKSHQQFLKELRN 315 (316) Q Consensus 243 WDSw~KIrvI~E~F~~~v~eq~~kn~~dt~d~~~l~t~~eSi~~~~~~ssqI~d~eldi~~ks~Q~fLqeLqn 315 (316) ||+++||.+++|+|.+...+ |.+|+.++.+|.++..| |.++.+++.|+||.+.|. T Consensus 224 WD~~kKI~il~enf~~~~~~-------d~y~d~i~~P~~Rk~v~-----------~~~~~aed~Q~fl~k~~~ 278 (415) T PTHR12688 224 WDNEKKIGILHENFTTVKPE-------DAYEDIIVKPPVRKLVH-----------EKEIAAEDEQVFLMKQQS 278 (415) T ss_pred CCCHHHHHHHHCCCCCCCCC-------CCCCCCCCCCCCCHHHH-----------HHHHHHHHHHHHHHHHHH T ss_conf 88077889876052002444-------21011025785012345-----------888754467789999999 No 5 >KOG3929 Uncharacterized conserved protein [Function unknown] Probab=96.43 E-value=0.051 Score=36.29 Aligned_columns=184 Identities=17% Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH------HHCCCCEEEEEECC Q ss_conf 678999999887655112688899999998752333589999999986067278888886------52021002222035 Q Fun_So_SPAC458 61 TDQLLRFFVHQSLRLHGLDALWVIYVNYVFSENPKGFAKDLLEVLRVCQNSTNEFHEEFF------VTRDKQKTIMNEYH 134 (316) Q Consensus 61 t~~l~~f~v~q~l~~hgld~lw~i~v~~~~~~~~~~f~~~ll~~lr~~~n~~~~~~~~f~------~~~~k~~~~~~~~~ 134 (316) +++|--|-+---|.+-.+|-+|+-|-+++ +|.-.-.-++-|-.+|.+.+.+|+.. |.||.+-.-|.+-- T Consensus 115 ~~~l~~~slIL~LDls~p~~~W~t~E~~~-----~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~ 189 (363) T KOG3929 115 GDTLRTFSLILVLDLSKPNDLWPTMENLL-----QATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPF 189 (363) T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 56287756667651156244325799999-----9999899999998741488999999999998621468740002778 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCC Q ss_conf 40343055423111114123266765552224551268999999999986418613788640656514688998874013 Q Fun_So_SPAC458 135 NFFSTVGSDEFSPFFNFTIILPQIDDENKTFSMNDDMKDFIQQFIRSLLLLIPMSSLMYLSTNPCSWDNFKSLLNLYLLN 214 (316) Q Consensus 135 ~~~~~~~s~~~~~~~nft~~l~qld~a~Keh~~~De~~DFIqQfLRTvLLk~~GASLiYTStkp~s~~NL~~Liky~L~i 214 (316) -+-.+|-...+..|-|| +++..-| +-|++|.++-.|+||-++|-|-.|--++-++-.+.+ T Consensus 190 P~PV~IVgsKYDvFq~F-------esekRkH---------~C~~LRf~Ah~yGaaLlmfSskMe~l~K~ir~~i~H---- 249 (363) T KOG3929 190 PVPVVIVGSKYDVFQDF-------ESEKRKH---------ICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINH---- 249 (363) T ss_pred CCCEEEECCCCHHHCCC-------CHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- T ss_conf 85347853520001266-------3678999---------999999999997789999888789999998777775---- Q ss_pred CCHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHH Q ss_conf 31122168876563441145135865887703565100466436665100131023332 Q Fun_So_SPAC458 215 DNPISLQENHHTITSNTIDNDRLLIPPCWDTMQKIQNVNLKFCTIVVDLATKNLHQVFE 273 (316) Q Consensus 215 ~sllk~~~~~h~~~AnvIDrD~vlIPagWDSw~KIrvI~E~F~~~v~eq~~kn~~dt~d 273 (316) .-.|-+-+--..|-.+.-++|-.|-|||++|++---.=+-.-+-+.-+-|-.+|+ T Consensus 250 ----laFG~~~~~s~~vD~NkPlfi~~G~DS~~~IG~pp~~~nd~Ga~sp~elw~~~F~ 304 (363) T KOG3929 250 ----LAFGIDKSKSICVDQNKPLFITAGLDSFGQIGSPPVPENDIGAHSPMELWKKVFE 304 (363) T ss_pred ----HHCCCCCCCCEEEECCCCEEEEECCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf ----4047657665453078745898555322333788887433454333789999998 No 6 >PTHR13236 DYNEIN 2 LIGHT INTERMEDIATE CHAIN, ISOFORM 2. Probab=68.40 E-value=8.9 Score=21.36 Aligned_columns=74 Identities=23% Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHH Q ss_conf 26899999999998641861378864065651468899887401331122168876563441145135865887703565 Q Fun_So_SPAC458 170 DMKDFIQQFIRSLLLLIPMSSLMYLSTNPCSWDNFKSLLNLYLLNDNPISLQENHHTITSNTIDNDRLLIPPCWDTMQKI 249 (316) Q Consensus 170 e~~DFIqQfLRTvLLk~~GASLiYTStkp~s~~NL~~Liky~L~i~sllk~~~~~h~~~AnvIDrD~vlIPagWDSw~KI 249 (316) +....+-+.+|-+.-. +||+|+|.|.+. ..+...++......-|-....... .+-...-+.||.|.|||.+| T Consensus 233 e~rk~~~~~Lr~~ah~-~Ga~L~~~s~~~---~~l~~~~~~~~~~l~Fg~~~~~~~----~~~~~~P~~~~~g~d~~~~~ 304 (397) T PTHR13236 233 EKRKVICRTLRFLAHA-YGASLLFLSSKS---EALLKKVRGVINHLAFGSPLPKSI----LVDHNKPLAIPAGLDSLAKI 304 (397) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCEEEECCCHHHHHC T ss_conf 7899999999999997-436876774225---899999999998886303566776----52045771687061347660 Q ss_pred HH Q ss_conf 10 Q Fun_So_SPAC458 250 QN 251 (316) Q Consensus 250 rv 251 (316) .. T Consensus 305 g~ 306 (397) T PTHR13236 305 GL 306 (397) T ss_pred CC T ss_conf 67 No 7 >PIRSF001662 Rnase_inhibitor Probab=40.48 E-value=17 Score=19.54 Aligned_columns=44 Identities=34% Q ss_pred HHHHH------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHH--HHHHHHH Q ss_conf 26888------------99999998752333-589999999986067278--8888865 Q Fun_So_SPAC458 78 LDALW------------VIYVNYVFSENPKG-FAKDLLEVLRVCQNSTNE--FHEEFFV 121 (316) Q Consensus 78 ld~lw------------~i~v~~~~~~~~~~-f~~~ll~~lr~~~n~~~~--~~~~f~~ 121 (316) ||||| +..+++-+|.+..+ .|+.+++||+-.+..-+. |.|+|.. T Consensus 35 LDALWDcLTG~V~~Pl~l~wk~f~~Sk~~l~~~A~~~~~Vl~~~~~~~~dyGfee~F~~ 93 (96) T PIRSF001662 35 LDALWDCLTGWVELPLTLVWKNFEQSKALLENGAEEVLQVLEEVKAEYEDYGFEEKFKI 93 (96) T ss_pred HHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE T ss_conf 57776644376157716887175677554258999999999999975089993300335 No 8 >PTHR23123 PHD/F-BOX CONTAINING PROTEIN. Probab=36.75 E-value=84 Score=14.88 Aligned_columns=75 Identities=17% Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEECCCC Q ss_conf 455126899999999998641861378864065651468899887401331122168876563441145135865887 Q Fun_So_SPAC458 166 SMNDDMKDFIQQFIRSLLLLIPMSSLMYLSTNPCSWDNFKSLLNLYLLNDNPISLQENHHTITSNTIDNDRLLIPPCW 243 (316) Q Consensus 166 ~~~De~~DFIqQfLRTvLLk~~GASLiYTStkp~s~~NL~~Liky~L~i~sllk~~~~~h~~~AnvIDrD~vlIPagW 243 (316) .|-|=|+||==-=.==-.|+ |.-+||. .+|+..|-+-.--....--.....-...-.-....|-.-+.+|||+|| T Consensus 238 sYTDFHidfgGtSvwYhvl~--G~KiFyL-i~Pt~~N~~~~~~~~~~~~~~~Ffg~~v~~c~~~~v~~G~Tl~iP~GW 312 (1109) T PTHR23123 238 SYTDFHIDFGGTSVWYHVLK--GEKIFYL-IRPTEANLLYEQWSSSSNQSEMFFGDQVDKCYKCVVKQGQTLLIPSGW 312 (1109) T ss_pred CCCHHHHHCCCHHHHHHHHC--CCEEEEE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCHH T ss_conf 24112121255112222003--6526885-140688899999986431122133677635440233168777604402 No 9 >COG1422 Predicted membrane protein [Function unknown] Probab=25.93 E-value=6.1e+02 Score=9.11 Aligned_columns=75 Identities=20% Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 4445678999999887655112688899999998752333589999---9999860672788888865202100222203 Q Fun_So_SPAC458 57 SSCITDQLLRFFVHQSLRLHGLDALWVIYVNYVFSENPKGFAKDLL---EVLRVCQNSTNEFHEEFFVTRDKQKTIMNEY 133 (316) Q Consensus 57 ~s~~t~~l~~f~v~q~l~~hgld~lw~i~v~~~~~~~~~~f~~~ll---~~lr~~~n~~~~~~~~f~~~~~k~~~~~~~~ 133 (316) +-+.-++.+|...--.++. +.-.|+|.|-++....--+.+.+++ |-++-.|+.-.|+.+||.+.|.++-..++++ T Consensus 25 ~~~~i~~~ln~~f~P~i~~--~~p~lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkk 102 (201) T COG1422 25 IRDGIGGALNVVFGPLLSP--LPPHLVILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKK 102 (201) T ss_pred HHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH T ss_conf 9999999999999887412--20899999999999999999999851399999999999999999999987058889999 No 10 >KOG4346 Uncharacterized conserved protein [Function unknown] Probab=20.86 E-value=6.1e+02 Score=9.14 Aligned_columns=143 Identities=20% Q ss_pred HHHHHHHHHHHH----HHHCHHHEEEEHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-------- Q ss_conf 046777788887----420100113001244456789999---------99887655112688899999998-------- Q Fun_So_SPAC458 32 GGIYSKQIHYLL----TQAERSQIIHVWQSSCITDQLLRF---------FVHQSLRLHGLDALWVIYVNYVF-------- 90 (316) Q Consensus 32 ~g~~~~~~~yl~----~~~~~~~~~~~wq~s~~t~~l~~f---------~v~q~l~~hgld~lw~i~v~~~~-------- 90 (316) ||+|+|..+|+. +-+--+.+.-+-|--|.-|++.+| +.-|.+-+|.--+.---+|-+.- T Consensus 193 ge~y~k~~~~ivdS~ql~~~~n~l~~l~qkacvqg~~n~~dg~~s~rm~ll~Qgs~eH~~~~t~~~lv~a~dr~l~~~L~ 272 (849) T KOG4346 193 GEPYMKTVAEIVDSGQLIDITNKLGLLVQKACVQGSLNNFDGQWSRRMFLLYQGSQEHESLLTTLFLVSASDRILKRCLE 272 (849) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH T ss_conf 33799999999731112456525578778999999999887899999999987777765566778887623089998887 Q ss_pred ----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEE---------------CCCEEEEECCCCCCHHHHH Q ss_conf ----752333589999999986067278888886520210022220---------------3540343055423111114 Q Fun_So_SPAC458 91 ----SENPKGFAKDLLEVLRVCQNSTNEFHEEFFVTRDKQKTIMNE---------------YHNFFSTVGSDEFSPFFNF 151 (316) Q Consensus 91 ----~~~~~~f~~~ll~~lr~~~n~~~~~~~~f~~~~~k~~~~~~~---------------~~~~~~~~~s~~~~~~~nf 151 (316) ..+.|..-+.+|.+-|++...+-+.--.+--....++-+++- .|-.-.+.-| .|.|- T Consensus 273 gNlv~~~~kr~~~~~l~~qr~L~~k~ie~l~nhl~~~~~~~p~llq~~~~l~~~w~~~~~~Rh~~l~~qes----l~~~~ 348 (849) T KOG4346 273 GNLVTGTLKRVVMVKLPFQRVLKRKTIEILINHLYRTKEQFPILLQETSHLVRMWLLVHLFRHCSLIDQES----LFLNS 348 (849) T ss_pred HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH----HHHHH T ss_conf 65445578888888607762020136766776453021335789999999999988767765257426889----99998 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 12326676555222455126899999999 Q Fun_So_SPAC458 152 TIILPQIDDENKTFSMNDDMKDFIQQFIR 180 (316) Q Consensus 152 t~~l~qld~a~Keh~~~De~~DFIqQfLR 180 (316) -+-++++++- .+.|+|+-++..+-+-| T Consensus 349 ll~~akl~~~--Lr~~~dsl~fsn~i~Cr 375 (849) T KOG4346 349 LLGVAKLMSM--LRMYVDSLIFSNQILCR 375 (849) T ss_pred HHCCHHHHHC--CCHHHHHHHHHHHHHHH T ss_conf 6232122001--30568988889888876 No 11 >PIRSF036510 PDH_fung Probab=20.05 E-value=2.1e+02 Score=12.27 Aligned_columns=29 Identities=24% Q ss_pred CCCCC-HHHHHHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 24551-26899999999998641861378864065 Q Fun_So_SPAC458 165 FSMND-DMKDFIQQFIRSLLLLIPMSSLMYLSTNP 198 (316) Q Consensus 165 h~~~D-e~~DFIqQfLRTvLLk~~GASLiYTStkp 198 (316) ||.+| |||+++-.-|- ||+ ++-+|.|++| T Consensus 148 HRasdPEsFe~Vn~vls--Clk---SkvVYLsa~E 177 (456) T PIRSF036510 148 HRASDPESFEIVNEVLS--CLK---SKVVYLSAEE 177 (456) T ss_pred CCCCCCCCHHHHHHHHH--HHC---CCEEEECCCC T ss_conf 26888733467888987--406---6606751012 Done!