BLASTP 2.2.17 (Aug-26-2007) Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. RID: S7G766T8015 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 5,825,767 sequences; 2,008,571,985 total letters Query= gi|5453634|ref|NP_006132.1| dynein, cytoplasmic, light intermediate polypeptide 2 [Homo sapiens] >gi|3287825|sp|O43237|DC1L2_HUMAN Cytoplasmic dynein 1 light intermediate chain 2 (Dynein light intermediate chain 2, cytosolic) (LIC53/55) (LIC-2) >gi|2665836|gb|AAB88513.1| dynein light intermediate chain 2 [Homo sapiens] >gi|119603445|gb|EAW83039.1| dynein, cytoplasmic 1, light intermediate chain 2, isoform CRA_a [Homo sapiens] >gi|119603446|gb|EAW83040.1| dynein, cytoplasmic 1, light intermediate chain 2, isoform CRA_a [Homo sapiens] >gi|158256964|dbj|BAF84455.1| unnamed protein product [Homo sapiens] Length=492 Score E Sequences producing significant alignments: (Bits) Value ref|XP_389594.1| hypothetical protein FG09418.1 [Gibberella zeae 87.8 7e-18 ref|XP_384685.1| hypothetical protein FG04509.1 [Gibberella zeae 32.7 0.27 ref|XP_388485.1| hypothetical protein FG08309.1 [Gibberella zeae 32.3 0.32 ref|XP_382492.1| hypothetical protein FG02316.1 [Gibberella zeae 32.3 0.38 ref|XP_391111.1| hypothetical protein FG10935.1 [Gibberella zeae 30.0 1.6 ref|XP_382305.1| hypothetical protein FG02129.1 [Gibberella zeae 30.0 1.8 ref|XP_382833.1| hypothetical protein FG02657.1 [Gibberella zeae 29.6 2.0 ref|XP_384737.1| hypothetical protein FG04561.1 [Gibberella zeae 29.6 2.5 ref|XP_389787.1| hypothetical protein FG09611.1 [Gibberella zeae 29.3 3.1 ref|XP_385276.1| hypothetical protein FG05100.1 [Gibberella zeae 29.3 3.3 ref|XP_391087.1| hypothetical protein FG10911.1 [Gibberella zeae 28.9 4.3 ref|XP_383500.1| hypothetical protein FG03324.1 [Gibberella zeae 28.5 4.6 ref|XP_380217.1| hypothetical protein FG00041.1 [Gibberella zeae 28.5 5.6 ref|XP_389253.1| predicted protein [Gibberella zeae PH-1] 28.1 5.9 ref|XP_387609.1| hypothetical protein FG07433.1 [Gibberella zeae 28.1 6.0 ref|XP_388283.1| hypothetical protein FG08107.1 [Gibberella zeae 28.1 6.1 ref|XP_382885.1| hypothetical protein FG02709.1 [Gibberella zeae 28.1 7.2 ref|XP_381134.1| hypothetical protein FG00958.1 [Gibberella zeae 28.1 7.2 ref|XP_388886.1| hypothetical protein FG08710.1 [Gibberella zeae 28.1 7.2 ref|XP_390391.1| hypothetical protein FG10215.1 [Gibberella zeae 28.1 7.3 ref|XP_390824.1| hypothetical protein FG10648.1 [Gibberella zeae 27.7 9.5 ALIGNMENTS >ref|XP_389594.1| hypothetical protein FG09418.1 [Gibberella zeae PH-1] Length=512 Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 86/359 (23%), Positives = 155/359 (43%), Gaps = 47/359 (13%) Query 30 EEGQSLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLE-- 87 E+ + LW+S+L V++ R LP KN++V G + + L +E + L+ Sbjct 21 EQKKDLWTSMLESVASGKR--LPE-KNLIVLGGSPEHQRDFLESLSSSEPRRNADRLKIP 77 Query 88 ---------YLYLSVHDEDRDDH-TRCNVWIL-DGDLYHKGLLKFAVSAESLPETLVIFV 136 Y Y V D D+DD R +++ L L+ ++ E++P T +I + Sbjct 78 PIANNFALGYTYYDVLDADQDDTLARVSLYFLSQASTEFASLVAPLLTPETIPNTSLIIL 137 Query 137 ADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQ 196 D S+P + + W V++E + K+ + E K+ + G+P Sbjct 138 LDWSQPHLWLRQIWTWVQVIQEVLKKVDTDQHALMEEVMSAWKE-RGRGGAATNLDGTP- 195 Query 197 RRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEHLDFIQS 256 +GSD ++ +LPLG LG+P+ VVC ++ +++ D + Sbjct 196 --SATATGSDGDS-SLPLGPGEWEEPLGLPLCVVC-----------QNAWKEPDFDTVLQ 241 Query 257 HLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPAL--------VVEKDAV 308 +LR L++GA+LIYTS L ++H T G T L V+++D + Sbjct 242 YLRTVLLRHGASLIYTSQNAPSQL----PSLIHSTLGI---TSLLKRHPLKHNVIDRDKI 294 Query 309 FIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVHDKELAAEDEQVFLMKQQ 367 +P WD+ KI +L F + +++ + I P +D + DE ++Q Sbjct 295 VVPTNWDSWGKIRVLGGTFDAEQVSNSWSEDISTPRESMRFNDDDQGEVDEAELEEREQ 353 >ref|XP_384685.1| hypothetical protein FG04509.1 [Gibberella zeae PH-1] Length=1342 Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query 57 ILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSV---HDEDRDDHTR 103 + ++G G GKT LM+++ + H K ++ LY V H+E+ D R Sbjct 78 LWLYGRPGCGKTVLMSRIIESVHSKYTNKVQLLYFYVGNSHNENSDQMYR 127 >ref|XP_388485.1| hypothetical protein FG08309.1 [Gibberella zeae PH-1] Length=1471 Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query 54 GKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDL 113 G+ ILV G+ GSG TT + + +G E LY + D D + V+ + D+ Sbjct 184 GEMILVLGKPGSGCTTFLKSIANQRYGYTAVEGEVLYGPWANTDFDQYRGEAVYNAEDDV 243 Query 114 YHKGL-----LKFAV 123 +H L L FA+ Sbjct 244 HHPTLTVEQTLGFAI 258 >ref|XP_382492.1| hypothetical protein FG02316.1 [Gibberella zeae PH-1] Length=1463 Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 0/26 (0%) Query 51 LPSGKNILVFGEDGSGKTTLMTKLQG 76 +PSGK LV G GSGK+TLM L G Sbjct 631 IPSGKLTLVVGPVGSGKSTLMKALLG 656 >ref|XP_391111.1| hypothetical protein FG10935.1 [Gibberella zeae PH-1] Length=1351 Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query 13 GPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMT 72 P+ A + GDL S + S +L VS + LP G + G GSGKTTL+ Sbjct 68 APSWLAPSTYGDLVSSKFNTASKMKPLLHSVS----ANLPPGTLTAIIGGSGSGKTTLLN 123 Query 73 KL 74 + Sbjct 124 TV 125 >ref|XP_382305.1| hypothetical protein FG02129.1 [Gibberella zeae PH-1] Length=1764 Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 1/26 (3%) Query 53 SGKNILVFGEDGSGKTTLM-TKLQGA 77 S KNIL+ GE G+GKT LM T +Q A Sbjct 224 SPKNILIQGEAGAGKTVLMSTAVQAA 249 >ref|XP_382833.1| hypothetical protein FG02657.1 [Gibberella zeae PH-1] Length=495 Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query 237 VSVLEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVH 289 VS + +Y +EH QS+ ++ CL Y A L S +K+++++ +YI++ Sbjct 325 VSSVANIREYVEEH----QSN-KQLCLAYDACLAMLSAFRDKHINIVTRYIIN 372 >ref|XP_384737.1| hypothetical protein FG04561.1 [Gibberella zeae PH-1] Length=1262 Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 12/52 (23%) Query 48 RSKLPSGKNILVFGEDGSGKTTLMTKL----------QGAEHGKKGRGLEYL 89 RS P +NILV GE G GK+T + + H K R LEY+ Sbjct 607 RSPRPLYRNILVLGETGVGKSTFINAFYNFLKFHSFSEAKTHSK--RKLEYV 656 >ref|XP_389787.1| hypothetical protein FG09611.1 [Gibberella zeae PH-1] Length=1473 Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Query 42 EVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLY 90 +V T K +G+ + V G GSGK+TL+ L H G E LY Sbjct 1216 DVLTDVNLKFKAGERVAVVGRTGSGKSTLVLSLLRFTHVVSG---EILY 1261 >ref|XP_385276.1| hypothetical protein FG05100.1 [Gibberella zeae PH-1] Length=938 Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust. Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 0/25 (0%) Query 58 LVFGEDGSGKTTLMTKLQGAEHGKK 82 +V G G+GKTTL+ + A+HGKK Sbjct 31 IVTGYLGAGKTTLLNYILTAQHGKK 55 >ref|XP_391087.1| hypothetical protein FG10911.1 [Gibberella zeae PH-1] Length=698 Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%) Query 51 LPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDD 100 +P+GK + V G G GK+TL+ L + + GR L + D+D D Sbjct 462 IPAGKKVAVVGPSGCGKSTLLRLLFRSYDVQGGRVL------IDDQDIRD 505 >ref|XP_383500.1| hypothetical protein FG03324.1 [Gibberella zeae PH-1] Length=891 Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Query 29 EEEGQSLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEY 88 EEEG + W L ++ A ILV G+ G GK+TL+ K+ G E + + E Sbjct 379 EEEGLAPW---LKDMQLEASGV--KAFRILVCGKTGVGKSTLINKVFGVEMTDESQSYEQ 433 Query 89 LYLSVHD 95 VHD Sbjct 434 ---GVHD 437 >ref|XP_380217.1| hypothetical protein FG00041.1 [Gibberella zeae PH-1] Length=998 Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%) Query 403 VPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSP--GSPGAGGVQSTAKKSG 460 + S PG+ V PDP LA+F + + +K GSP G QST ++ Sbjct 575 IQSHFPGSKVSLPDPLTILTG-----LATFGHETIGRKRARSFKGSPELGLRQSTWHQAD 629 Query 461 QKTVLSNVQEE--LDRMTRKP 479 LS+V+EE L ++ R P Sbjct 630 SPVPLSSVKEESGLGKLARSP 650 >ref|XP_389253.1| predicted protein [Gibberella zeae PH-1] Length=217 Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust. Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 0/21 (0%) Query 56 NILVFGEDGSGKTTLMTKLQG 76 NI + G +GKTTL+ K+QG Sbjct 9 NIYIIGPQSTGKTTLIHKIQG 29 >ref|XP_387609.1| hypothetical protein FG07433.1 [Gibberella zeae PH-1] Length=842 Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Query 365 KQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGPAS-VPSSSP 408 + ++LL K A+ R +SPA GP G R + GGP + P +SP Sbjct 704 RNRALLEKASASRGR-DKSPAPGPRGHRRDRSTGGPETRFPIASP 747 >ref|XP_388283.1| hypothetical protein FG08107.1 [Gibberella zeae PH-1] Length=1016 Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Query 179 KDFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALP-----LGDNVLTHNLGIPVLVVCT 232 +D D++EP EG + ++ G D VA+P LGD V+ + V+ + T Sbjct 33 EDSVDHLEPSEGMTDAARKATVYHQGDDLNTVAIPCHHIRLGDYVMLRDRPCQVIRIST 91 >ref|XP_382885.1| hypothetical protein FG02709.1 [Gibberella zeae PH-1] Length=738 Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 18/105 (17%) Query 319 KIAILHENFTTVKPEDAYEDFIVKP----PVRKLVHDKELAAEDEQVFLMKQQSLLAKQP 374 K+ I H N+T K + A +++KP VRK + K AA E + + ++ L A++ Sbjct 591 KVNIHHLNYTLSKSKFACLAWLLKPFIRPIVRKALELKIAAAIAEGLHFLNREMLYARER 650 Query 375 ATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNI 419 TR ++ P + + R PA PDPNI Sbjct 651 LRATRIAD-PKDLWTFTRAIAARLVPA-------------PDPNI 681 >ref|XP_381134.1| hypothetical protein FG00958.1 [Gibberella zeae PH-1] Length=1018 Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 15/70 (21%) Query 328 TTVKPEDAYEDFIVKPPVRKLVHDKELAAEDEQVFLMKQQSLLAKQPATPTRASESPARG 387 T+ +P A + +PP+R+++ ELA Q +PT +SPA G Sbjct 777 TSREPSPAKDSVSARPPLRRVLSKAELAEF---------------QRPSPTSGRKSPASG 821 Query 388 PSGSPRTQGR 397 PRT R Sbjct 822 RKSPPRTLQR 831 >ref|XP_388886.1| hypothetical protein FG08710.1 [Gibberella zeae PH-1] Length=593 Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust. Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 0/30 (0%) Query 48 RSKLPSGKNILVFGEDGSGKTTLMTKLQGA 77 R K P+ NILV G SGKT+ + L+ A Sbjct 220 RRKDPTPMNILVIGTRNSGKTSFLEFLKTA 249 >ref|XP_390391.1| hypothetical protein FG10215.1 [Gibberella zeae PH-1] Length=566 Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Query 384 PARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPN----IKNNAASEGV 428 PA + PRT G G A+ PS++ K+ D N K+N SEG+ Sbjct 42 PASSSTARPRTVGVRGTANHPSNASAPDTKRHDRNKNTKSKSNLDSEGL 90 >ref|XP_390824.1| hypothetical protein FG10648.1 [Gibberella zeae PH-1] Length=1060 Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Query 226 PVLVVCTKC--DAVSVLEKEHDYRDEHLDFIQSHLR 259 P+LV CT+ +A+ + ++H YR E L+ + LR Sbjct 449 PILVECTRLQREALDEIPQDHQYRSEMLNTLGYRLR 484 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Jan 7, 2008 5:52 PM Number of letters in database: 5,952,804 Number of sequences in database: 11,638 Lambda K H 0.312 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11638 Number of Hits to DB: 0 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 100: 0 Number of HSP's better than 100 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 492 Length of database: 5952804 Length adjustment: 99 Effective length of query: 393 Effective length of database: 4800642 Effective search space: 1886652306 Effective search space used: 1886652306 T: 11 A: 40 X1: 16 (7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (20.8 bits) S2: 51 (24.3 bits)