BLASTP 2.1.1 [Aug-8-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6324254|ref|NP_014324.1|
Imp4p^Agi|1730744|sp|P53941|IMP4_YEAST U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN PROTEIN IMP4^Agi|1077202|pir||S53904 hypothetical
protein YNL075w - yeast (Saccharomyces
cerevisiae)^Agi|791110|emb|CAA60184.1| (X86470) unknown [Saccharomyces
cerevisiae]^Agi|1301963|emb|CAA95949.1| (Z71351) ORF YNL075w
[Saccharomyces cerevisiae]
         (290 letters)

Database: nr
           618,844 sequences; 195,544,254 total letters

Searching..................................................

E-value threshold for inclusion in PSI-Blast iteration 1: 0.002 
E-value threshold for inclusion in PSI-Blast iteration 2:


Distribution of 25 Blast Hits on the Query Sequence




Sequences with E-value BETTER than threshold
Score E Sequences producing significant alignments: (bits) Value ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae] >gi|1730744... 565 e-160 emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora ... 318 6e-86 sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C ... 298 6e-80 gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleo... 252 3e-66 gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila me... 252 4e-66 sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN... 245 5e-64 gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanos... 231 8e-60 emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis ... 136 4e-31 pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thalia... 131 8e-30 gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila mel... 125 6e-28 pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fra... 122 3e-27 dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapi... 121 1e-26 sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN... 114 1e-24 pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis ele... 114 1e-24 sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN ... 112 7e-24 emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lip... 107 1e-22 ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae] >gi|731684|... 102 5e-21 gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneu... 69 5e-11 pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (... 56 8e-07 emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albi... 52 6e-06
Sequences with E-value WORSE than threshold
pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi ... 38 0.092 emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus sol... 38 0.099 pir||H71203 hypothetical protein PH1900 - Pyrococcus horikosh... 37 0.29 emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia t... 35 1.3 sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN ... 33 3.5
Alignments
>ref|NP_014324.1| Imp4p [Saccharomyces cerevisiae]
 sp|P53941|IMP4_YEAST U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
 pir||S53904 hypothetical protein YNL075w - yeast (Saccharomyces cerevisiae)
 emb|CAA60184.1| (X86470) unknown [Saccharomyces cerevisiae]
 emb|CAA95949.1| (Z71351) ORF YNL075w [Saccharomyces cerevisiae]
          Length = 290

 Score =  565 bits (1440), Expect = e-160
 Identities = 290/290 (100%), Positives = 290/290 (100%)

Query: 1   MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
           MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ
Sbjct: 1   MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60

Query: 61  SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120
           SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG
Sbjct: 61  SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120

Query: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG 180
           NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG
Sbjct: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG 180

Query: 181 NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR 240
           NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR
Sbjct: 181 NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR 240

Query: 241 TREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
           TREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL
Sbjct: 241 TREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
>emb|CAC18315.1| (AL451022) probable IMP4 protein [Neurospora crassa]
          Length = 295

 Score =  318 bits (806), Expect = 6e-86
 Identities = 167/298 (56%), Positives = 221/298 (74%), Gaps = 13/298 (4%)

Query: 1   MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
           M+R+QAR+RR+YLYR+A  L+++++ +KR  ++ ALA GKPL  E+A+D+ L+KDF YD 
Sbjct: 1   MIRKQARQRRDYLYRRALLLKEAEVAEKRAKLRSALASGKPLDPEIAKDKELRKDFDYDV 60

Query: 61  SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120
           S       D + +DDEY+  SG++DPRI+VTTSRDPS+RL QF+KEI+LL P +VRLNRG
Sbjct: 61  S--RDVNGDAIDIDDEYSELSGVIDPRILVTTSRDPSSRLGQFSKEIRLLLPTSVRLNRG 118

Query: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINA- 179
           N V+ +LV A K    TD+V+LHEHRGVPT++TISHFPHGPT   SLHNVV+R DI  + 
Sbjct: 119 NLVLEDLVGAAKAQNLTDVVLLHEHRGVPTAMTISHFPHGPTLMVSLHNVVLRADIPKSI 178

Query: 180 -GNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSE------RVITFANRGDFIS 232
            G  SE  P LIF+ F+T LG+RVV ILKHLF   P++ ++      RVITF N  D I 
Sbjct: 179 KGTVSESYPRLIFEGFSTKLGERVVKILKHLFP--PREPTQKPNVGNRVITFVNNDDTIE 236

Query: 233 VRQHVYVRTR-EGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDY 289
           VR HVYVRT  + VE++EVGPRF M+ F++ +GTL+NKDAD EW L ++ RT+ KK+Y
Sbjct: 237 VRHHVYVRTSYDSVELSEVGPRFTMKPFKITMGTLDNKDADTEWHLSQYTRTSRKKNY 294
>sp|O13823|YEE7_SCHPO HYPOTHETICAL 33.4 KDA PROTEIN C19A8.07C IN CHROMOSOME I
 pir||T37954 hypothetical protein SPAC19A8.07c - fission yeast
           (Schizosaccharomyces pombe)
 emb|CAB11643.1| (Z98974) hypothetical protein [Schizosaccharomyces pombe]
          Length = 289

 Score =  298 bits (755), Expect = 6e-80
 Identities = 153/291 (52%), Positives = 215/291 (73%), Gaps = 5/291 (1%)

Query: 1   MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
           MLRR  RERR+++Y++ QELQ+++L +KR+ +++AL   K L K+L ED  LQKD++YD+
Sbjct: 1   MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDE 60

Query: 61  SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120
           S + ++E  +  +DDEY    G  +P+++VTTSR+PS+RL+QFAKE++LL PN+ RLNRG
Sbjct: 61  S-RATQEETETNLDDEYHRL-GEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRG 118

Query: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG 180
           N V+ +LV+A + +  TD+V+LHEHRG+P  L ISH P+GPT  FSLHNVV+RHDI N G
Sbjct: 119 NIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTG 178

Query: 181 NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR 240
             SE  PHLIF+N T+ LGKRV   L  LF   PK  + RV+TFAN  D+IS R H+Y +
Sbjct: 179 TMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIYAK 238

Query: 241 T-REGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
           T  + + ++E GPRFEM+LFE+ LGT++  DADVEW+L+ + R  +K+D L
Sbjct: 239 TGPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPYQR--HKRDVL 287
>gb|AAG52427.1|AC011622_15 (AC011622) putative U3 small nucleolar ribonucleoprotein protein;
           1537-3735 [Arabidopsis thaliana]
 gb|AAG52449.1|AC010852_6 (AC010852) putative U3 small nucleolar ribonucleoprotein protein;
           73469-75667 [Arabidopsis thaliana]
          Length = 294

 Score =  252 bits (638), Expect = 3e-66
 Identities = 130/297 (43%), Positives = 205/297 (68%), Gaps = 12/297 (4%)

Query: 1   MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
           M RR  R ++EY+YRK+ E  + ++ +++++I++AL +GKP+P EL    +++   R + 
Sbjct: 1   MQRRLVRLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTEL---RNVEAKLRQEI 57

Query: 61  SLKESEEA-DDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNR 119
            L++   A     +DDEYA  +   DP+I++TTSR+PS  L +F KE+K +FPN+ R+NR
Sbjct: 58  DLEDQNTAVPRSHIDDEYANATE-ADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRINR 116

Query: 120 GNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINA 179
           G+ V+  +++  +    TD++++HEHRGVP  L ISH P GPTA F L NVV RHDI + 
Sbjct: 117 GSQVISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDK 176

Query: 180 ---GNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236
              G   E  PHLIF+NFTT +G+RV  ILKH+F A PK D++R++TF+N+ D+IS R H
Sbjct: 177 KSIGKMPEQYPHLIFNNFTTQMGQRVGNILKHIFPA-PKLDAKRIVTFSNQSDYISFRNH 235

Query: 237 VYVRTREG---VEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
           VY +   G   +E+ E+GPRFE+RL++++LGT+E  +A++EW +R ++ T+ K+ ++
Sbjct: 236 VYDKGEGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFI 292
>gb|AAF56395.1| (AE003750) CG11920 gene product [Drosophila melanogaster]
          Length = 298

 Score =  252 bits (637), Expect = 4e-66
 Identities = 131/289 (45%), Positives = 197/289 (67%), Gaps = 9/289 (3%)

Query: 1   MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
           MLR+QAR+RREYLY KA   +    Q+ ++ + +++ + K +       ++++K     +
Sbjct: 1   MLRKQARQRREYLYNKALTERLKSKQKIQETVVKSINENKAIGS-----KNVKKSLTAYK 55

Query: 61  SLKESEEA-DDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNR 119
           SLK ++E  DD  V+DEY   +G  DP+I++TTS +PS+RL  F KE++L+ PNA ++NR
Sbjct: 56  SLKYADEGVDDRTVNDEY-HYAGCEDPKIMLTTSHNPSSRLKMFMKELRLIIPNAQQMNR 114

Query: 120 GNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINA 179
           GNY +  L+ AC+ +  TD +++HEHRG+P SL + H P+GPTA F++ +VVMRHDI + 
Sbjct: 115 GNYQLTTLMHACRANNVTDFLIVHEHRGIPDSLVVCHLPYGPTAFFNISDVVMRHDIPDI 174

Query: 180 GNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYV 239
           G+ SE  PHLIF+NF T +G R V ILKHLF   PK++S+RV++F N  D I  R H Y 
Sbjct: 175 GHMSEQKPHLIFNNFKTPIGLRTVKILKHLFPV-PKENSQRVMSFLNHNDSIIFRHHQYK 233

Query: 240 RTREGVEIAEVGPRFEMRLFELRLGTLEN-KDADVEWQLRRFIRTANKK 287
              + +E+ EVGPRF ++L++++LGTLEN K AD EW  R ++ T+ K+
Sbjct: 234 YVNKELELTEVGPRFSLKLYQIKLGTLENIKAADTEWINRPYMNTSQKR 282
>sp|O62518|YHPK_CAEEL HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
 pir||T27998 hypothetical protein ZK795.3 - Caenorhabditis elegans
 emb|CAB05841.1| (Z83246) predicted using Genefinder~contains similarity to Pfam
           domain: PF01945 (Domain of unknown function),
           Score=306.9, E-value=7.7e-89, N=1~cDNA EST EMBL:M79771
           comes from this gene [Caenorhabditis elegans]
          Length = 292

 Score =  245 bits (619), Expect = 5e-64
 Identities = 137/296 (46%), Positives = 192/296 (64%), Gaps = 19/296 (6%)

Query: 1   MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
           M+RR+ R RRE+++RK+ E +   L++KR+ I+ AL     +      D +L+KD     
Sbjct: 1   MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKI------DYNLRKD----- 49

Query: 61  SLKESEEAD----DLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVR 116
           +++ ++ +D      + D EY   +G  DP+I++TTSRDPS+RL  FAKE+KL+FPNA R
Sbjct: 50  AIELAKGSDWGGQQYETDSEY-RWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQR 108

Query: 117 LNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI 176
           +NRG+Y +  +V A K   +TDL++  E RG P  + + H P GPTA FS+ NVVMRHDI
Sbjct: 109 INRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDI 168

Query: 177 INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236
            N G  SE  PHLIFDN  + LG R   ILKHLF   PK DS+R+ITF+N  D+IS R H
Sbjct: 169 PNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPV-PKPDSKRIITFSNSEDYISFRHH 227

Query: 237 VYVRTREG-VEIAEVGPRFEMRLFELRLGTLEN-KDADVEWQLRRFIRTANKKDYL 290
           VY    +G VE+ E GPRFE++ ++++LGTLE    A+ EW LR +  TA K+ +L
Sbjct: 228 VYKTENDGEVELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
>gb|AAD14602.1| (AF092910) stage specific peptide 24 [Trypanosoma cruzi]
          Length = 287

 Score =  231 bits (584), Expect = 8e-60
 Identities = 134/294 (45%), Positives = 192/294 (64%), Gaps = 11/294 (3%)

Query: 1   MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
           M R   R R+E+L RK  E     +  +++  ++A++   PLP  L +D    K F    
Sbjct: 1   MRRSVIRVRKEFLERKQNERVHEAIHARKEQFREAVSNATPLPGHLHKDALRLKKF---- 56

Query: 61  SLKESEEADDLQ--VDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLN 118
           +  + ++   LQ  VDDEY A +G+ DPR++VTTSR+PS +L +FAKEI+L+ P+AVR+N
Sbjct: 57  TELDDDQTRTLQTSVDDEY-ANAGVEDPRVLVTTSREPSQKLLEFAKEIRLVIPSAVRMN 115

Query: 119 RGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIIN 178
           RGN  +  L+DA ++   +D+VVL E +GVP SLT+SH P GPT  F++HN+V RHDI +
Sbjct: 116 RGNLSVRQLMDAARRGQYSDVVVLQESQGVPDSLTVSHLPLGPTVVFTIHNLVTRHDIQD 175

Query: 179 AGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVY 238
            G  SE +PHLIF+NFTT LG+RV  +LK LF   PK    RV+TF N+ DF+S R H +
Sbjct: 176 VGTMSEQHPHLIFENFTTRLGRRVRDVLKFLFPV-PKPRPTRVLTFDNQNDFVSFRHHTF 234

Query: 239 --VRTREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
             V+ RE V++ EVGPR ++  + + LGTLE  DA+ EW L+ ++ TA K+  L
Sbjct: 235 RAVKGRE-VQLTEVGPRMDVAPYRITLGTLEMDDAETEWVLQPYMNTAKKRRLL 287
>emb|CAB77726.1| (AL161492) hypothetical protein [Arabidopsis thaliana]
          Length = 343

 Score =  136 bits (339), Expect = 4e-31
 Identities = 93/306 (30%), Positives = 158/306 (51%), Gaps = 26/306 (8%)

Query: 7   RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSLKESE 66
           +++R  +Y  A++  + +L+++++I  +  A+ + L  EL E+   +   +  ++ +ES+
Sbjct: 42  KDKRSKVY--AKQKHEKKLEKQKKIRARDAAEKRAL--ELGEEPPQKMIPKTIENTRESD 97

Query: 67  EA----------DDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVR 116
           E            D+  D+        + P++++TT R  STR      E+  + PN+  
Sbjct: 98  ETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIPNSHY 157

Query: 117 LNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI 176
             RG Y +  +V+   K   T L+V+H +R  P +L I   P+GPTA F L N+V+R DI
Sbjct: 158 QKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAHFKLSNLVLRKDI 217

Query: 177 INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236
            N GN +   P L+ +NFTT LG RV    + LF   P     RV+TF N+ DFI  R H
Sbjct: 218 KNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTFHNQRDFIFFRHH 277

Query: 237 VYV------RTREGVE------IAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTA 284
            Y+      ++ +G E      + E GPRF ++L  L+ GT + K  + EW  +  + T+
Sbjct: 278 RYIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEMDTS 337

Query: 285 NKKDYL 290
            ++ +L
Sbjct: 338 RRRFFL 343
>pir||T01938 hypothetical protein F11O4.6 - Arabidopsis thaliana
 gb|AAC62782.1| (AF096370) contains similarity to a C. elegans hypothetical protein
           F44G4.1 (GB:Z49910) and several yeast hypothetical
           proteins such as 35.1 KD protein in NAM8-GAR1 intergenic
           region (SP:P38805) [Arabidopsis thaliana]
          Length = 434

 Score =  131 bits (328), Expect = 8e-30
 Identities = 92/311 (29%), Positives = 154/311 (48%), Gaps = 46/311 (14%)

Query: 7   RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYD------- 59
           +++R  +Y  A++  + +L+++++I  +  A+ + L  EL E+ ++ + F  D       
Sbjct: 42  KDKRSKVY--AKQKHEKKLEKQKKIRARDAAEKRAL--ELGEEVTIWRSFFRDFLKPPQK 97

Query: 60  ---QSLKESEEAD-------------DLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQF 103
              ++++ + E+D             D+  D+        + P++++TT R  STR    
Sbjct: 98  MIPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPAL 157

Query: 104 AKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPT-------SLTISH 156
             E+  + PN+    RG Y +  +V+   K   T L+V+H +R  P        +L I  
Sbjct: 158 ISELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPAFAISYVDALLIIG 217

Query: 157 FPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKK 216
            P+GPTA F L N+V+R DI N GN +   P L+ +NFTT LG RV    + LF   P  
Sbjct: 218 LPNGPTAHFKLSNLVLRKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNF 277

Query: 217 DSERVITFANRGDFISVRQHVYV------RTREGVE------IAEVGPRFEMRLFELRLG 264
              RV+TF N+ DFI  R H Y+      ++ +G E      + E GPRF ++L  L+ G
Sbjct: 278 RGRRVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIKPRLQECGPRFTLKLVTLQHG 337

Query: 265 TLENKDADVEW 275
           T + K  + EW
Sbjct: 338 TFDTKGGEFEW 348
>gb|AAF53162.1| (AE003635) CG6712 gene product [Drosophila melanogaster]
          Length = 394

 Score =  125 bits (312), Expect = 6e-28
 Identities = 84/272 (30%), Positives = 144/272 (52%), Gaps = 3/272 (1%)

Query: 7   RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSLKESE 66
           +E+R  LY+K ++ +  +  Q+R+  ++A     P     +  E  Q +          E
Sbjct: 106 KEQRLALYKKMKKEKHKKKMQERRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEE 165

Query: 67  EADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPN 126
              +LQ+DD  +      +P++++T + +P T+  +F  E+  +FPNA+   R    +  
Sbjct: 166 LQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKK 225

Query: 127 LVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQ-SEV 185
           +  + ++   TD+V+++E R  P  L + H P+GPTA F L NV +  DI     + ++ 
Sbjct: 226 ICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKH 285

Query: 186 NPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVRTREG- 244
            P +I +NFTT LG  V  +L  LF+  P+    R +TF N+ D+I  R H Y  T+EG 
Sbjct: 286 RPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGK 345

Query: 245 -VEIAEVGPRFEMRLFELRLGTLENKDADVEW 275
            V++ E+GPRF ++L  L+ GT ++K  D  W
Sbjct: 346 RVKLRELGPRFTLKLRSLQEGTFDSKTGDYAW 377
>pir||T50616 hypothetical protein DKFZp761G0415.1 - human (fragment)
          Length = 256

 Score =  122 bits (305), Expect = 3e-27
 Identities = 83/260 (31%), Positives = 139/260 (52%), Gaps = 12/260 (4%)

Query: 37  AQGKPLPKELAEDESLQKDFRYDQSLKE--SEEADDLQVDDEYAAT-SGIMDPRIIVTTS 93
           A  KP+PK      ++     YD++  +   EE    +  DE+A+  +    P+I++TTS
Sbjct: 3   APPKPVPK------TIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTS 56

Query: 94  RDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLT 153
             P  R  +  +++  + PN+    R    +  ++  C     TDL+V++E R  P  L 
Sbjct: 57  DRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLI 116

Query: 154 ISHFPHGPTAQFSLHNVVMRHDIINAG-NQSEVNPHLIFDNFTTALGKRVVCILKHLFNA 212
           +SH P+GPTA F + +V +R +I   G + +E  P +I +NFTT LG  +  +   LF  
Sbjct: 117 LSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPH 176

Query: 213 GPKKDSERVITFANRGDFISVRQHVYV-RTREGVEIAEVGPRFEMRLFELRLGTLENKDA 271
            P+    +V TF N+ D+I  R H Y+ R+ + V I E+GPRF ++L  L+ GT ++K  
Sbjct: 177 NPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYG 236

Query: 272 DVEWQLR-RFIRTANKKDYL 290
           + EW  + R + T+ +K +L
Sbjct: 237 EYEWVHKPREMDTSRRKFHL 256
>dbj|BAB14086.1| (AK022537) unnamed protein product [Homo sapiens]
          Length = 349

 Score =  121 bits (301), Expect = 1e-26
 Identities = 87/296 (29%), Positives = 155/296 (51%), Gaps = 18/296 (6%)

Query: 7   RERREYLYRKAQELQDSQLQQKRQIIKQAL------AQGKPLPKELAEDESLQKDFRYDQ 60
           ++RR  ++ + ++ Q  +    ++ +K+        A  KP+PK      ++     YD+
Sbjct: 60  KQRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPK------TIDNQRVYDE 113

Query: 61  SLKE--SEEADDLQVDDEYAAT-SGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRL 117
           +  +   EE    +  DE+A+  +    P+I++TTS  P  R  +  +++  + PN+   
Sbjct: 114 TTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVY 173

Query: 118 NRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDII 177
            R    +  ++  C     TDL+V++E R  P  L +SH P+GPTA F + +V +R +I 
Sbjct: 174 YRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIK 233

Query: 178 NAG-NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236
             G + +E  P +I +NFTT LG  +  +   LF   P+    +V TF N+ D+I  R H
Sbjct: 234 RRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFH 293

Query: 237 VYV-RTREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLR-RFIRTANKKDYL 290
            Y+ R+ + V I E+GPRF ++L  L+ GT ++K  + EW  + R + T+ +K +L
Sbjct: 294 RYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>sp|P54073|YUY1_CAEEL HYPOTHETICAL 87.9 KDA PROTEIN F44G4.1 IN CHROMOSOME II PRECURSOR
          Length = 754

 Score =  114 bits (284), Expect = 1e-24
 Identities = 84/309 (27%), Positives = 148/309 (47%), Gaps = 28/309 (9%)

Query: 7   RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSL--KE 64
           + +R    ++A        Q +R  I+  L +  P  +     ES+++   YD ++  +E
Sbjct: 449 KSQRGKALKRALRKDKRARQGERAQIRDELGESAPQKEVPKTIESMRE---YDATMVNEE 505

Query: 65  SEEADDLQVDDEYAAT-SGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYV 123
            +E +  + +DE+A   +    P++++T +        +F  E++   PN+    R N +
Sbjct: 506 DDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVL 565

Query: 124 MPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI------- 176
           +  +++  K+   TDL+V+HE R  P  +   H P GPTA F ++++    D+       
Sbjct: 566 LKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDN 625

Query: 177 ------------INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITF 224
                          G  +   P +I +NF T LG  +  +L  LF   PK    RV+TF
Sbjct: 626 FFMYCLKSLKLFYKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTF 685

Query: 225 ANRGDFISVRQHVYVRTREGVEIA--EVGPRFEMRLFELRLGTLENKDADVEWQLRRF-I 281
            N+ D+I  R H Y   +EG + A  E+GPRF +RL  L+ GT + K  + EW L+R  +
Sbjct: 686 HNQRDYIFFRHHRYEFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEM 745

Query: 282 RTANKKDYL 290
            T+ ++ +L
Sbjct: 746 ETSRRRFFL 754
>pir||T19409 hypothetical protein F44G4.1 - Caenorhabditis elegans
 emb|CAA93858.2| (Z70034) similarity to 35.1KD hypothetical yeast protein (Swiss
           Prot accession number P38805), contains similarity to
           Pfam domain: PF01945 (Domain of unknown function),
           Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
           from this gene~cDNA EST EM>
 emb|CAA90124.2| (Z49910) similarity to 35.1KD hypothetical yeast protein (Swiss
           Prot accession number P38805), contains similarity to
           Pfam domain: PF01945 (Domain of unknown function),
           Score=96.8, E-value=1.3e-25, N=1~cDNA EST CEMSE65F comes
           from this gene~cDNA EST EM>
          Length = 746

 Score =  114 bits (283), Expect = 1e-24
 Identities = 84/309 (27%), Positives = 148/309 (47%), Gaps = 28/309 (9%)

Query: 7   RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSL--KE 64
           + +R    ++A        Q +R  I+  L +  P  +     ES+++   YD ++  +E
Sbjct: 441 KSQRGKALKRALRKDKRARQGERAQIRDELGESAPQKEVPKTIESMRE---YDATMVNEE 497

Query: 65  SEEADDLQVDDEYAAT-SGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYV 123
            +E +  + +DE+A   +    P++++T +        +F  E++   PN+    R N +
Sbjct: 498 DDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVL 557

Query: 124 MPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI------- 176
           +  +++  K+   TDL+V+HE R  P  +   H P GPTA F ++++    D+       
Sbjct: 558 LKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKVCYFDN 617

Query: 177 ------------INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITF 224
                          G  +   P +I +NF T LG  +  +L  LF   PK    RV+TF
Sbjct: 618 FFMYCLKSLKLFYKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTF 677

Query: 225 ANRGDFISVRQHVYVRTREGVEIA--EVGPRFEMRLFELRLGTLENKDADVEWQLRRF-I 281
            N+ D+I  R H Y   +EG + A  E+GPRF +RL  L+ GT + K  + EW L+R  +
Sbjct: 678 HNQRDYIFFRHHRYEFKKEGSKAALLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEM 737

Query: 282 RTANKKDYL 290
            T+ ++ +L
Sbjct: 738 ETSRRRFFL 746
>sp|O14180|YDS4_SCHPO HYPOTHETICAL 35.8 KD PROTEIN C4F8.04 IN CHROMOSOME I
 pir||T38834 hypothetical coiled-coil protein - fission yeast
           (Schizosaccharomyces pombe)
 emb|CAB11051.1| (Z98530) hypothetical coiled-coil protein [Schizosaccharomyces
           pombe]
          Length = 306

 Score =  112 bits (277), Expect = 7e-24
 Identities = 85/280 (30%), Positives = 146/280 (51%), Gaps = 16/280 (5%)

Query: 10  REYLYRKA-QELQDSQLQQKRQIIKQALAQGKPLPKELAED--ESLQKDFRYDQSLKESE 66
           R+  Y KA  +    +L+++++  K+     +     L+E+   +++    YD+++ E +
Sbjct: 10  RQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDETIIEDK 69

Query: 67  EADDLQV---DDEYAA--TSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNA-VRLNRG 120
             ++LQ    DDE++A  +     P+++VTTS+  S +   FA E+   FPNA  R   G
Sbjct: 70  PDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTG 129

Query: 121 NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAG 180
           +  +  + +A  K G TDL+VL+E R    +LT+ H P+GP+  F+L N+    +I N G
Sbjct: 130 DIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHG 189

Query: 181 NQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR 240
             +   P LI +NF+T LG  V    + LF   P+    +V+T   + DF+  R+H Y  
Sbjct: 190 RSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAF 249

Query: 241 TRE-------GVEIAEVGPRFEMRLFELRLGTLENKDADV 273
             +       G  + E+GPRF MRL  ++ G  + K+ +V
Sbjct: 250 REKSNMPDGIGTGLQELGPRFTMRLRMVQKGVWDRKEGEV 289
>emb|CAB55338.1| (AJ006754) hypothetical protein [Yarrowia lipolytica]
          Length = 333

 Score =  107 bits (266), Expect = 1e-22
 Identities = 83/294 (28%), Positives = 150/294 (50%), Gaps = 13/294 (4%)

Query: 2   LRRQARERREYLYRKAQ-ELQDSQLQQKRQIIKQALAQGKPLPKELAED--ESLQKDFRY 58
           +R   +E+R+ ++ + + +L   + + +R+  K+     +   K LAE+  ++++    Y
Sbjct: 48  IRIANKEKRKKVFAEMKHKLNKERHEMRRERAKEEAKNPELKEKRLAENVPDTIEAKRVY 107

Query: 59  DQSLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLN 118
           D+++ +  E +D     EY        P++++TTS+    +   FA  +  + P +    
Sbjct: 108 DETIAQEMEGED--EFKEYFEEG--KPPKVLITTSKRARGQAYDFADLLYDIIPGSEFKK 163

Query: 119 R-GNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDII 177
           R G++ M  +   C +   TDLVV++E +     LT  H P GPT  FS+ ++ M  +I 
Sbjct: 164 RVGDFTMTQIAKMCAERDYTDLVVINEDKKKVNGLTFIHLPEGPTMYFSVSSLKMPKEIK 223

Query: 178 NAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHV 237
             G  +   P LI +NF+T LGK V  + + +F   P+    +V+T  N+ D+I  R+H 
Sbjct: 224 GHGRSTTHIPELILNNFSTRLGKTVGRLFQSMFPQQPEFVGRQVVTLHNQRDWIFFRRHR 283

Query: 238 YV-RTREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
           YV +  E V + E+GP+F +RL  L+ G       +VEW+ R  +    KK +L
Sbjct: 284 YVFKNEERVGLQELGPQFTLRLRRLQRGI----RGEVEWEHRSAMDKDKKKFHL 333
>ref|NP_011956.1| Rpf1p [Saccharomyces cerevisiae]
 sp|P38805|YHO8_YEAST HYPOTHETICAL 35.1 KDA PROTEIN IN NAM8-GAR1 INTERGENIC REGION
 pir||S46718 hypothetical protein YHR088w - yeast (Saccharomyces cerevisiae)
 gb|AAB68926.1| (U00060) Yhr088wp [Saccharomyces cerevisiae]
          Length = 295

 Score =  102 bits (253), Expect = 5e-21
 Identities = 79/293 (26%), Positives = 140/293 (46%), Gaps = 23/293 (7%)

Query: 2   LRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQS 61
           ++ +  + R  + RK  + +    + + Q +K+ + Q            +++    YD++
Sbjct: 22  IKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQ------------TIENTRVYDET 69

Query: 62  LKESEEADDLQVDD--EYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNR 119
           + +  E D+   DD   Y  ++    P+I +TT+ +      +FA  +  + PN   + R
Sbjct: 70  INKEVEGDE---DDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKR 126

Query: 120 G-NYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIIN 178
              Y +  + D C K   TD+V+++E +   T LT  H P GPT  F L + V    I+ 
Sbjct: 127 KFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVG 186

Query: 179 AGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVY 238
            G  +   P LI +NF T LG+ V  + + +    P  +  +VIT  N+ D+I  R+H Y
Sbjct: 187 HGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRY 246

Query: 239 V-RTREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
           V +  E V + E+GP+F ++L  L+ G  E    + EW+ +  +    KK YL
Sbjct: 247 VFKDNERVGLQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295
>gb|AAG38541.1|AF309805_6 (AF309805) coiled-coil protein [Pneumocystis carinii f. sp.
           carinii]
          Length = 277

 Score = 69.2 bits (167), Expect = 5e-11
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 151 SLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLF 210
           SL I H P GP+  F++ ++     I   G  +   P LI +NFTT LG  V  + + LF
Sbjct: 136 SLIIIHLPSGPSFYFTISSITPTSCIYRHGRATSHIPELIINNFTTYLGLTVENMFRSLF 195

Query: 211 NAGPKKDSERVITFANRGDFISVRQHVYVRTRE-GVEIAEVGPRFEMRLFELRLGTLENK 269
                 +  +V+T  N+ DFI +R+H Y+   +  V + E+GPRF ++L  L+ G + ++
Sbjct: 196 PTQADFEGRQVVTIHNQRDFIFIRRHRYIFKNDIKVSLQELGPRFTLKLRRLQRG-IHDR 254

Query: 270 DAD 272
            AD
Sbjct: 255 HAD 257
>pir||B72623 hypothetical protein APE1443 - Aeropyrum pernix (strain K1)
 dbj|BAA80440.1| (AP000061) 197aa long hypothetical protein [Aeropyrum pernix]
          Length = 197

 Score = 55.6 bits (132), Expect = 8e-07
 Identities = 29/69 (42%), Positives = 37/69 (53%)

Query: 81  SGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLV 140
           SG+   RI+VTTSR PS R+  F K++    P A R  RG+Y M  L       G   +V
Sbjct: 9   SGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIV 68

Query: 141 VLHEHRGVP 149
           V+ E RG P
Sbjct: 69  VVGERRGNP 77
>emb|CAB77655.1| (AJ390518) hypothetical protein [Candida albicans]
          Length = 97

 Score = 52.4 bits (124), Expect = 6e-06
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 5/100 (5%)

Query: 192 DNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYV-RTREGVEIAEV 250
           +NF + LGK V  + + +F   P+    +VIT  N+ D+I  R+H Y+ R  E V + E+
Sbjct: 2   NNFNSRLGKTVGRLFQSIFPHKPELQGRQVITLHNQRDYIFFRRHRYIFRNEEKVGLQEL 61

Query: 251 GPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
           GP+F ++L  ++ G       DV W+ R  +    KK YL
Sbjct: 62  GPQFTLKLRRMQKGV----RGDVVWEHRPDMERDKKKFYL 97
>pir||G75218 hypothetical protein PAB2357 - Pyrococcus abyssi (strain Orsay)
 emb|CAB49198.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
          Length = 224

 Score = 38.4 bits (88), Expect = 0.092
 Identities = 17/66 (25%), Positives = 36/66 (53%)

Query: 88  IIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRG 147
           +++TTS  P+ R   F  +++ +FPN++ + RG   +  L+      G   L++++  +G
Sbjct: 2   MLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWKG 61

Query: 148 VPTSLT 153
            P  +T
Sbjct: 62  NPLKMT 67
>emb|CAB57572.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
 emb|CAC23146.1| (AL512964) hypothetical [Sulfolobus solfataricus]
          Length = 170

 Score = 38.4 bits (88), Expect = 0.099
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 87  RIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRG 120
           RI++T+SRDPS R   F   +  + P++V++ RG
Sbjct: 7   RIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRG 40
>pir||H71203 hypothetical protein PH1900 - Pyrococcus horikoshii
 dbj|BAA31023.1| (AP000007) 334aa long hypothetical protein [Pyrococcus horikoshii]
          Length = 224

 Score = 36.9 bits (84), Expect = 0.29
 Identities = 17/66 (25%), Positives = 35/66 (52%)

Query: 88  IIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRG 147
           +++TTS  P+ R   F  +++ + PN++ L RG   +  L+      G   L++++  +G
Sbjct: 2   MLITTSHRPTRRTRSFGHDLERVIPNSLYLTRGKKTIQELLMEAYDRGYERLLIINVWKG 61

Query: 148 VPTSLT 153
            P  +T
Sbjct: 62  NPLKMT 67
>emb|CAC27105.1| (AJ010592) hypothetical protein [Guillardia theta]
          Length = 186

 Score = 34.9 bits (79), Expect = 1.3
 Identities = 37/176 (21%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 89  IVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGV 148
           I+TTS+ PS  L +    +K          R  +   +L+   K+    +++ L E+   
Sbjct: 6   IITTSKKPSKTLLKILHLLKKYLITPRYYKRNKFKFRHLMIYLKRKNINNMIYLFENNN- 64

Query: 149 PTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKH 208
              ++I +F      +F ++N+++   I +   +    P +I+ NF       +  +L  
Sbjct: 65  RYFVSIVNFQENIHIKFGINNLLITSRISSIIYKDY--PEIIYLNFKAQHEIYIQKVLTQ 122

Query: 209 -LFNAGPKKDSERVITFANRG--DFISVRQHVYVRTREGVEIAEVGPRFEMRLFEL 261
            L+   P  + E +  ++N+G   F S R +++ +    V+I E+GPR   ++  +
Sbjct: 123 ILYQVSPLTNRELLCIYSNKGIIYFRSFR-YIFSKNLRDVKIQEIGPRLNFKILNI 177
>sp|P34524|YM63_CAEEL HYPOTHETICAL 40.2 KD PROTEIN K12H4.3 IN CHROMOSOME III
 pir||S44853 K12H4.3 protein - Caenorhabditis elegans
 gb|AAA28097.1| (L14331) coded for by C. elegans cDNAs GenBank:  CE5D1 (Z14791),
           CEL01F1 (M88817), CEL04B5(M88849), and CEL04C1(M75812);
           putative [Caenorhabditis elegans]
          Length = 352

 Score = 33.4 bits (75), Expect = 3.5
 Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 32/268 (11%)

Query: 14  YRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSLKESEEADDLQV 73
           + K +++Q+ +   ++    +  A G          +    D +  Q+ +E+ +  +L  
Sbjct: 4   FSKIKKVQEEESAHQKM---EWEAAGAKDSSSDDSSDESDNDDQPKQATEETRKRAELWT 60

Query: 74  DDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNA---VRLNRGNYVMPNLVDA 130
           + E          R++V  SR    R     K+IK L P+A    +L++    +  L + 
Sbjct: 61  NRE----------RVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQ-QKSLNVLNEI 109

Query: 131 CKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVN-PHL 189
            +    T ++     +   T L +S+   GP+ +F +HNV    ++  +GN    + P L
Sbjct: 110 AEMKNCTKVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVL 169

Query: 190 IFDN---------FTTALGKRVVCILKHLFNAGPKKDSERVITFA-NRGDFISVRQHVYV 239
            FD+            A+  + +    H   + P  D   V  F+   GD I  R    V
Sbjct: 170 SFDDAFDKKPQLKLIKAVLMQTLGTPHHHPRSQPFVD--HVFNFSVGEGDKIWFRNFQIV 227

Query: 240 RTREGVEIAEVGPRFEMRLFELRLGTLE 267
              E +++ EVGPRF + +  L  G+ E
Sbjct: 228 --DESLQLQEVGPRFVLEMVRLFAGSFE 253
CPU time:    38.91 user secs.	    1.14 sys. secs	   40.05 total secs.

  Database: nr
    Posted date:  Feb 10, 2001  7:10 PM
  Number of letters in database: 195,544,254
  Number of sequences in database:  618,844
  
Lambda     K      H
   0.320    0.136    0.386 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106189021
Number of Sequences: 618844
Number of extensions: 4354799
Number of successful extensions: 14390
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 14225
Number of HSP's gapped (non-prelim): 121
length of query: 290
length of database: 195,544,254
effective HSP length: 57
effective length of query: 233
effective length of database: 160,270,146
effective search space: 37342944018
effective search space used: 37342944018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 71 (32.1 bits)