Sequences with E-value BETTER than threshold 754 0.0
741 0.0
263 2e-69
247 2e-64
246 6e-64
214 1e-54
164 2e-39
164 3e-39
137 2e-31
135 1e-30
112 9e-24
65 2e-09
Sequences with E-value WORSE than threshold ref|NP_014565.1| Essential nucleolar protein required for bio... 35 2.3
Alignments
>gb|AAD16459.1| (AF102805) Peter Pan [Drosophila melanogaster]
Length = 460
Score = 754 bits (1926), Expect = 0.0
Identities = 412/460 (89%), Positives = 412/460 (89%)
Query: 1 MGGKKKVHPKTRTAAFKASEPSEIVEAPHSFVIHRGLACPYITDLTLDFRRIMEPFTASN 60
MGGKKKVHPKTRTAAFKASEPSEIVEAPHSFVIHRGLACPYITDLTLDFRRIMEPFTASN
Sbjct: 1 MGGKKKVHPKTRTAAFKASEPSEIVEAPHSFVIHRGLACPYITDLTLDFRRIMEPFTASN 60
Query: 61 LREKRMNRIQDFVCLSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDV 120
LREKRMNRIQDFVCLSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDV
Sbjct: 61 LREKRMNRIQDFVCLSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDV 120
Query: 121 ISLSKKQMIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCV 180
ISLSKKQMIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCV
Sbjct: 121 ISLSKKQMIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCV 180
Query: 181 LFSYNPDTKLVEMRHYSVQVVPVGLKRAVQKIVKGTVPNLGKCNEVVDFVTKDGYXXXXX 240
LFSYNPDTKLVEMRHYSVQVVPVGLKRAVQKIVKGTVPNLGKCNEVVDFVTKDGY
Sbjct: 181 LFSYNPDTKLVEMRHYSVQVVPVGLKRAVQKIVKGTVPNLGKCNEVVDFVTKDGYASESE 240
Query: 241 XXXXXQSHVVLAQTLKSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVV 300
QSHVVLAQTLKSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVV
Sbjct: 241 AEDDEQSHVVLAQTLKSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVV 300
Query: 301 KTEDEKETXXXXXXXXXXXXXXXXXXXAENRARNLKLKKDEKWAAKRAAEGRTDSDPEDD 360
KTEDEKET AENRARNLKLKKDEKWAAKRAAEGRTDSDPEDD
Sbjct: 301 KTEDEKETLRKLVEKKRKQKEQRKKEQAENRARNLKLKKDEKWAAKRAAEGRTDSDPEDD 360
Query: 361 AEYYKEEVGEEPDEELFKMEAKSSRKRPSLGGGMKYKNKRAKLDTKDKNDKSERTXXXXX 420
AEYYKEEVGEEPDEELFKMEAKSSRKRPSLGGGMKYKNKRAKLDTKDKNDKSERT
Sbjct: 361 AEYYKEEVGEEPDEELFKMEAKSSRKRPSLGGGMKYKNKRAKLDTKDKNDKSERTDKYDR 420
Query: 421 XXXXXXXXXXXXXXPKNGRAKFDPKNKRAKFDHRKSRKSK 460
PKNGRAKFDPKNKRAKFDHRKSRKSK
Sbjct: 421 KDKFDRKDKKDKFDPKNGRAKFDPKNKRAKFDHRKSRKSK 460
>gb|AAF55851.1| (AE003733) ppan gene product [Drosophila melanogaster]
Length = 460
Score = 741 bits (1893), Expect = 0.0
Identities = 409/460 (88%), Positives = 410/460 (88%)
Query: 1 MGGKKKVHPKTRTAAFKASEPSEIVEAPHSFVIHRGLACPYITDLTLDFRRIMEPFTASN 60
MGGKKKVHPKTRTAAFKASEPSEIVEAPHSFVIHRGLACPYITDLTLDFRRIMEPFTASN
Sbjct: 1 MGGKKKVHPKTRTAAFKASEPSEIVEAPHSFVIHRGLACPYITDLTLDFRRIMEPFTASN 60
Query: 61 LREKRMNRIQDFVCLSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDV 120
LREKRMNRI+DFV LSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDV
Sbjct: 61 LREKRMNRIKDFVSLSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDV 120
Query: 121 ISLSKKQMIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCV 180
ISLSKKQMIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCV
Sbjct: 121 ISLSKKQMIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCV 180
Query: 181 LFSYNPDTKLVEMRHYSVQVVPVGLKRAVQKIVKGTVPNLGKCNEVVDFVTKDGYXXXXX 240
LFSYNPDTKLVEMRHYSVQVVPVGLKRAVQKIVKGTVPNLGKCNEVVDFVTKDGY
Sbjct: 181 LFSYNPDTKLVEMRHYSVQVVPVGLKRAVQKIVKGTVPNLGKCNEVVDFVTKDGYASESE 240
Query: 241 XXXXXQSHVVLAQTLKSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVV 300
QSHVVLAQTLKSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVV
Sbjct: 241 AEDDEQSHVVLAQTLKSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVV 300
Query: 301 KTEDEKETXXXXXXXXXXXXXXXXXXXAENRARNLKLKKDEKWAAKRAAEGRTDSDPEDD 360
KTEDEKET AENRARNLKLKKDEKWAAKRAAEGRTDSDPEDD
Sbjct: 301 KTEDEKETLRKLVEKKRKQKEQRKKEQAENRARNLKLKKDEKWAAKRAAEGRTDSDPEDD 360
Query: 361 AEYYKEEVGEEPDEELFKMEAKSSRKRPSLGGGMKYKNKRAKLDTKDKNDKSERTXXXXX 420
AEYYKEEVGEEPDEELFKMEAKSSRKRPSLGGGMKYKNKRAKLDTKDKNDKSERT
Sbjct: 361 AEYYKEEVGEEPDEELFKMEAKSSRKRPSLGGGMKYKNKRAKLDTKDKNDKSERTDKYDR 420
Query: 421 XXXXXXXXXXXXXXPKNGRAKFDPKNKRAKFDHRKSRKSK 460
PKN RAKFDPKNKRAKFDHRKSRKSK
Sbjct: 421 KDKFDRKDKKDKFDPKNRRAKFDPKNKRAKFDHRKSRKSK 460
>emb|CAC18877.1| (AJ300588) SSF1/P2Y11 chimeric protein [Homo sapiens]
Length = 794
Score = 263 bits (667), Expect = 2e-69
Identities = 148/427 (34%), Positives = 233/427 (53%), Gaps = 30/427 (7%)
Query: 8 HPKTRTAAFKASEPSEIVEAPHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMN 67
H K A + PHSFV RG I L+LD RR+MEP TAS L+ ++ N
Sbjct: 9 HQKRARAQAQLRNLEAYAANPHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKN 68
Query: 68 RIQDFVCLSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQ 127
++D V ++ V+H I +K T + FK++RLP GP+LTF+V +++L RDV+S ++
Sbjct: 69 SLKDCVAVAGPLGVTHFLILSKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRH 128
Query: 128 MIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPD 187
+ F H PL+++N+F G H+KLMAT FQN+FPSIN+ VN+ TI+RC+L YNPD
Sbjct: 129 RMHEQQFAHPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPD 188
Query: 188 TKLVEMRHYSVQVVPVGLKRAVQKIVKGTVPNLGKCNEVVDFV-TKDGYXXXXXXXXXXQ 246
++ ++ RHYS++VVPVG R ++K+++ PN+ + ++ + + T G
Sbjct: 189 SQELDFRHYSIKVVPVGASRGMKKLLQEKFPNMSRLQDISELLATGAGLSESEAEPDGDH 248
Query: 247 SHVVLAQTLKSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVVKTEDEK 306
+ L Q + +GN+ ++S+++L EIGPR+T+QLIK++EG+ G+V++H V KTE+E
Sbjct: 249 NITELPQAVAGRGNMRAQQSAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSFVSKTEEEL 308
Query: 307 ETXXXXXXXXXXXXXXXXXXXAENRARNLKLKKDEKWAA----KRAAEGRTDSD----PE 358
+ A+N R + ++ + + K+A G +D + P
Sbjct: 309 QAILEAKEKKLRLKAQRQAQQAQNVQRKQEQREAHRKKSLEGMKKARVGGSDEEASGIPS 368
Query: 359 DDAE----------------YYKEEVGEEPDEELFKMEAKSSRKRPSLGGGMKYKNKRAK 402
A Y+ + VGE P E+LF EAK R S G K KR +
Sbjct: 369 RTASLELGEDDDEQEDDDIEYFCQAVGEAPSEDLFP-EAKQKRLAKSPG----RKRKRWE 423
Query: 403 LDTKDKN 409
+D K+
Sbjct: 424 MDRGAKS 430
>ref|XP_009028.1| peter pan (Drosophila) homolog [Homo sapiens]
Length = 473
Score = 247 bits (625), Expect = 2e-64
Identities = 148/422 (35%), Positives = 231/422 (54%), Gaps = 30/422 (7%)
Query: 8 HPKTRTAAFKASEPSEIVEAPHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMN 67
H K A + PHSFV RG I L+LD RR+MEP TAS L+ ++ N
Sbjct: 9 HQKRARAQAQLRNLEAYAANPHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKN 68
Query: 68 RIQDFVCLSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQ 127
++D V ++ V+H I +K T + FK++RLP GP+LTF+V Q++L RDV+S ++
Sbjct: 69 SLKDCVAVAGPLGVTHFLILSKTETNVYFKLMRLPGGPTLTFQVLQYSLVRDVVSSLRRH 128
Query: 128 MIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPD 187
+ F H PL+++N+F G H+KLMAT FQN+FPSIN+ VN+ TI+RC+L YNPD
Sbjct: 129 RMHEQQFAHPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPD 188
Query: 188 TKLVEMRHYSVQVVPVGLKRAVQKIVKGTVPNLGKCNEVVDFV-TKDGYXXXXXXXXXXQ 246
++ ++ RHYS++VVPVG R ++K+++ PN+ + ++ + + T G
Sbjct: 189 SQELDFRHYSIKVVPVGASRGMKKLLQEKFPNMSRLQDISELLATGAGLSESEAEPDGDH 248
Query: 247 SHVVLAQTLKSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVVKTEDEK 306
+ L Q + +GN+ ++S+++L EIGPR+T+QLIK++EG+ G+V++H V KTE+E
Sbjct: 249 NITELPQAVAGRGNMRAQQSAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSFVSKTEEEL 308
Query: 307 ETXXXXXXXXXXXXXXXXXXXAENRARNLKLKKDEKWAA----KRAAEGRTDSD----PE 358
+ A+N R + ++ + + K+A G +D + P
Sbjct: 309 QAILEAKEKKLRLKAQRQAQQAQNVQRKQEQREAHRKKSLEGMKKARVGGSDEEASGIPS 368
Query: 359 DDAE----------------YYKEEVGEEPDEELFKMEAKSSRKRPSLGGGMKYKNKRAK 402
A Y+ + VGE P E+LF EAK R S G K KR +
Sbjct: 369 RTASLELGEDDDEQEDDDIEYFCQAVGEAPSEDLFP-EAKQKRLAKSPG----RKRKRWE 423
Query: 403 LD 404
+D
Sbjct: 424 MD 425
>ref|NP_064615.1| peter pan (Drosophila) homolog; second-step splicing factor 1 [Homo
sapiens]
emb|CAB99252.1| (AJ292529) suppressor of sterile four 1 [Homo sapiens]
Length = 473
Score = 246 bits (621), Expect = 6e-64
Identities = 147/422 (34%), Positives = 231/422 (53%), Gaps = 30/422 (7%)
Query: 8 HPKTRTAAFKASEPSEIVEAPHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMN 67
H K A + PHSFV RG I L+LD RR+MEP TAS L+ ++ N
Sbjct: 9 HQKRARAQAQLRNLEAYAANPHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKN 68
Query: 68 RIQDFVCLSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQ 127
++D V ++ V+H I +K T + FK++RLP GP+LTF+V +++L RDV+S ++
Sbjct: 69 SLKDCVAVAGPLGVTHFLILSKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRH 128
Query: 128 MIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPD 187
+ F H PL+++N+F G H+KLMAT FQN+FPSIN+ VN+ TI+RC+L YNPD
Sbjct: 129 RMHEQQFAHPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPD 188
Query: 188 TKLVEMRHYSVQVVPVGLKRAVQKIVKGTVPNLGKCNEVVDFV-TKDGYXXXXXXXXXXQ 246
++ ++ RHYS++VVPVG R ++K+++ PN+ + ++ + + T G
Sbjct: 189 SQELDFRHYSIKVVPVGASRGMKKLLQEKFPNMSRLQDISELLATGAGLSESEAEPDGDH 248
Query: 247 SHVVLAQTLKSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVVKTEDEK 306
+ L Q + +GN+ ++S+++L EIGPR+T+QLIK++EG+ G+V++H V KTE+E
Sbjct: 249 NITELPQAVAGRGNMRAQQSAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSFVSKTEEEL 308
Query: 307 ETXXXXXXXXXXXXXXXXXXXAENRARNLKLKKDEKWAA----KRAAEGRTDSD----PE 358
+ A+N R + ++ + + K+A G +D + P
Sbjct: 309 QAILEAKEKKLRLKAQRQAQQAQNVQRKQEQREAHRKKSLEGMKKARVGGSDEEASGIPS 368
Query: 359 DDAE----------------YYKEEVGEEPDEELFKMEAKSSRKRPSLGGGMKYKNKRAK 402
A Y+ + VGE P E+LF EAK R S G K KR +
Sbjct: 369 RTASLELGEDDDEQEDDDIEYFCQAVGEAPSEDLFP-EAKQKRLAKSPG----RKRKRWE 423
Query: 403 LD 404
+D
Sbjct: 424 MD 425
>dbj|BAB10077.1| (AB010069) contains similarity to RNA binding
protein~gene_id:MAC9.8 [Arabidopsis thaliana]
Length = 346
Score = 214 bits (541), Expect = 1e-54
Identities = 111/272 (40%), Positives = 171/272 (62%), Gaps = 3/272 (1%)
Query: 28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIQDFVCLSSFFHVSHMGIF 87
P SFV R + L +D R++M P+TA +L+EK+ N ++DF+ +S V+H +
Sbjct: 34 PKSFVFSRMKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLNVSGPMGVTHFLML 93
Query: 88 NKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSG 147
+K ++ LS +V R P+GP+LTFK+HQ++LA D+ + D FK PL++++ F
Sbjct: 94 SKTASSLSLRVARTPQGPTLTFKIHQYSLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGS 153
Query: 148 DGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLKR 207
HLKL FQN+FP+I++ TV + T +R VL +YN DTKL++ RHYS+++ PVG+ R
Sbjct: 154 QELHLKLATIMFQNIFPAIDINTVKLSTCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSR 213
Query: 208 AVQKIVKG-TVPNLGKCNEVVDFVTKDGYXXXXXXXXXXQSHVVLAQTLKSKGNLEDKKS 266
++K V+ VP+L +V DFVTK GY + V L+ L + N KS
Sbjct: 214 RIRKFVQNHQVPDLRNLQDVSDFVTKAGYGSESEGDEEAAT-VTLSSDL-GRVNKGATKS 271
Query: 267 SIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDH 298
++KL EIGPR+TMQL+K+EEGL TG +++ ++
Sbjct: 272 AVKLQEIGPRMTMQLVKVEEGLCTGGIIFSEY 303
>pir||T32923 hypothetical protein K09H9.6 - Caenorhabditis elegans
gb|AAB97575.1| (AF043700) contains similarity to human RNA-binding protein FUS/TLS
(SW:Q28009) [Caenorhabditis elegans]
Length = 608
Score = 164 bits (412), Expect = 2e-39
Identities = 86/239 (35%), Positives = 145/239 (59%), Gaps = 9/239 (3%)
Query: 4 KKKVHPKTRTAAFKASEPSEIVEAPHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLRE 63
++K K + F ++ E+ PH VIHRG Y+ L D R ++EP TA NL+
Sbjct: 32 QEKFVKKLQKQKFLENKEIELARQPHCLVIHRGDVGKYVKGLESDLRNLVEPNTAKNLKI 91
Query: 64 KRMNRIQDFVCLSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISL 123
+ N I+DF+ + V++M + + L +++R +GP+L+FKV Q++LAR V++
Sbjct: 92 LKRNNIKDFIVNGAVLGVTNMMVLTSSDASLQLRMMRFSQGPTLSFKVKQYSLARHVVNC 151
Query: 124 SKKQMIDNDHFKHAPLVIMNNFSGDG--KHLKLMATTFQNMFPSINLATVNIGTIRRCVL 181
K+ + + FK +PLV+MN F GDG KHL L+ T QNMFPSIN+ T+ +G ++RC++
Sbjct: 152 QKRPVATDKLFKSSPLVVMNGF-GDGTQKHLSLVQTFIQNMFPSINVDTIQLGNLKRCLI 210
Query: 182 FSYNPDTKLVEMRHYSVQVVPVGLKRAVQKIVKG------TVPNLGKCNEVVDFVTKDG 234
SY+ +T ++MRH++++VV GL ++V+K+++ +PNL ++ D+ G
Sbjct: 211 VSYDEETDEIQMRHFAIRVVASGLNKSVKKLMQAEKTMGKNIPNLSTYKDISDYFLNPG 269
Score = 61.8 bits (148), Expect = 2e-08
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 246 QSHVVLAQTL-KSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVVKTED 304
Q V L Q + + +G +KS+++LHEIGPRLT++L+KIEEG+ GEVLYH H KT D
Sbjct: 315 QQEVELPQDISEGRGCGVGQKSNVRLHEIGPRLTLELVKIEEGIDEGEVLYHKHNAKTPD 374
Query: 305 E 305
E
Sbjct: 375 E 375
>pir||T39008 probable mating protein - fission yeast (Schizosaccharomyces pombe)
emb|CAB11063.1| (Z98531) putative mating protein [Schizosaccharomyces pombe]
Length = 361
Score = 164 bits (411), Expect = 3e-39
Identities = 95/281 (33%), Positives = 158/281 (55%), Gaps = 21/281 (7%)
Query: 45 LTLDFRRIMEPFTASNLREKRMNRIQDFVCLSSFFHVSHMGIFNKASTQLSFKVVRLPRG 104
LT D R +MEP TA L+E++ N+I+D++ ++ V+H+ + ++ + +++R PRG
Sbjct: 17 LTRDLRHMMEPHTAIRLKERKANKIKDYLTMAGPLGVTHLLVLSRTDNNANLRIIRAPRG 76
Query: 105 PSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNF----SGDGKHLKLMATTFQ 160
PSL F++H++ L +DV L K F PL++MN+F S D H L+ TTFQ
Sbjct: 77 PSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQ 136
Query: 161 NMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLKRAVQKIVKGT---- 216
NMFP I++ NI +++R +L + D +++RH+ + PVG+ R ++ ++KG
Sbjct: 137 NMFPPISVQHTNINSVKRVLLLNRR-DDGYIDLRHFIISTKPVGISRPIRHLLKGEKKDS 195
Query: 217 -VPNLGKCNEVVDFVTK-DGYXXXXXXXXXXQSHVV----------LAQTLKSKGNLEDK 264
+P+L ++ D+V DG + V L + L+ K
Sbjct: 196 DIPDLHNVRDISDYVLHGDGISGAASDSEIEEDATVEIDRPVPTKTEENLLSASQLLKPK 255
Query: 265 KSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVVKTEDE 305
+ +IKL EIGPR+T++LIKI E + G+VLYH HV K+++E
Sbjct: 256 QQAIKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEE 296
>gb|AAF39738.1|AC005935_5 (AC005935) RNA Binding Protein 1 [Leishmania major]
gb|AAF43468.1|AC012381_4 (AC012381) RNA Binding Protein 1 [Leishmania major]
Length = 374
Score = 137 bits (343), Expect = 2e-31
Identities = 92/323 (28%), Positives = 167/323 (51%), Gaps = 20/323 (6%)
Query: 28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIQDFVCLSSFFHVSHMGIF 87
P S +I+RG ++ L ++R + P+++ L K + ++DF+ +++ F SH+ +F
Sbjct: 25 PKSIIIYRGEVGIHVRSLMHEWRNVFLPWSSKKLHGKNKS-LKDFLAVAATFSASHLQLF 83
Query: 88 NKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQM-IDNDHFKHAPLVIMNNFS 146
S S +++R GP+L+F+V FTL +++++ ++ + +D ++ AP+V++NNF+
Sbjct: 84 TAPSQGTSLRIMRFFNGPTLSFRVLSFTLHKEIVAKQRRPVAVDRAAWEVAPIVVLNNFT 143
Query: 147 G-DGKH---LKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVP 202
D H + L+ TF+ +FPS+N+ T+ I+R LF Y+ +VE+RHY +
Sbjct: 144 HPDLAHRAEVPLLTATFKALFPSLNVQTIQSSEIQRICLFHYDHVEHVVEVRHYYINART 203
Query: 203 VGLKRAVQKIVKGTVP----NLGKCNEVVDFVTKDGYXXXXXXXXXXQSHVVLAQTLKSK 258
VG+ + V+K+++ P L +EV+D +D + V L Q +
Sbjct: 204 VGVTKTVKKLLENRRPTKLGTLESIDEVLD--REDAWSDTDGEG----EEVPLVQPFRQ- 256
Query: 259 GNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVVKTEDEKETXXXXXXXXXX 318
++ +KL EIGPR+T+QL K+E G GEV+YH KT E +
Sbjct: 257 ---HREQCRVKLQEIGPRMTLQLSKVENGFAGGEVIYHRTEKKTLREVQVNASKVRARKT 313
Query: 319 XXXXXXXXXAENRARNLKLKKDE 341
EN R + ++D+
Sbjct: 314 EKAKRRALQDENVQRKRQKREDK 336
>ref|NP_011933.1| homologous to Ssf2p; Ssf1p [Saccharomyces cerevisiae]
sp|P38789|SSF1_YEAST SSF1 PROTEIN
pir||S46700 SSF1 protein - yeast (Saccharomyces cerevisiae)
gb|AAB68379.1| (U00061) Ssf1p [Saccharomyces cerevisiae]
gb|AAA79980.1| (U18113) Ssf1p [Saccharomyces cerevisiae]
Length = 453
Score = 135 bits (336), Expect = 1e-30
Identities = 104/363 (28%), Positives = 183/363 (49%), Gaps = 65/363 (17%)
Query: 6 KVHPKTRTAAFKASEPSEIVEAPHSFVIHRG---LACPYITDLTLDFRRIMEPFTASNLR 62
K K RT A E + + P S VI G LA + L DFR+IM+P TA L+
Sbjct: 3 KRRQKKRTHAQLTPEQEQGI--PKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLK 60
Query: 63 EKRMNRIQDFVCLSSFFHVSHMGIFNKA--STQLSFKVVRLPRGPSLTFKVHQFTLARDV 120
E++ N+++DFV + V+H+ +F ++ + +S K+ R P+GP++TF+V ++L RD+
Sbjct: 61 ERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDI 120
Query: 121 IS-LSKKQMIDNDHFKHAPLVIMNNFSGDGKH---------LKLMATTFQNMFPSINLAT 170
L + + ++ND + PL+++N FS + K++ + FQN+FP +N A
Sbjct: 121 KKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPAR 180
Query: 171 VNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLKRAVQKIVKG------TVPNLGKCN 224
++ +I+R + + + +T + MRHY + + V + R ++++ K TVPNL +
Sbjct: 181 TSLNSIKRVFMINKDRETGEISMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKE 240
Query: 225 EVVDFVTKDGYXXXXXXXXXXQSHVVL-----------AQTLKSK--------------- 258
++ + +V +Q+LKS+
Sbjct: 241 DISSLILDHDLGAYTSESEIEDDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKE 300
Query: 259 --------------GNLE--DKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVVKT 302
NL+ +K +IKL E+GPRLT++L+KIEEG+ +G+VL+H+ V K+
Sbjct: 301 TEEEDVEMEEPKPSENLQPTPRKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKS 360
Query: 303 EDE 305
+E
Sbjct: 361 SEE 363
>ref|NP_010598.1| possibly involved in mating; Ssf2p [Saccharomyces cerevisiae]
sp|Q12153|SSF2_YEAST SSF2 PROTEIN
pir||S50248 SSF2 protein - yeast (Saccharomyces cerevisiae)
gb|AAA79981.1| (U18114) Ssf2p [Saccharomyces cerevisiae]
gb|AAB64748.1| (U28374) Ssf2p [Saccharomyces cerevisiae]
Length = 453
Score = 112 bits (278), Expect = 9e-24
Identities = 69/231 (29%), Positives = 130/231 (55%), Gaps = 21/231 (9%)
Query: 21 PSEIVEAPHSFVIHRG---LACPYITDLTLDFRRIMEPFTASNLREKRMNRIQDFVCLSS 77
P + + P S VI G LA + L DFR+IM+P TA L+E++ N+++DFV +
Sbjct: 16 PEQERDIPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCG 75
Query: 78 FFHVSHMGIFNKA--STQLSFKVVRLPRGPSLTFKVHQFTLARDVIS-LSKKQMIDNDHF 134
V+H+ +F ++ + +S K+ R P+GP++TF+V ++L RD+ L + + ++ND
Sbjct: 76 PLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDV 135
Query: 135 KHAPLVIMNNFSGDGKH---------LKLMATTFQNMFPSINLATVNIGTIRRCVLFSYN 185
+ PL+++N FS + K++ + FQN+FP +N A ++ +I+R + + +
Sbjct: 136 LNPPLLVLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRIFMINKD 195
Query: 186 PDTKLVEMRHYSVQVVPVGLKRAVQKIVKG------TVPNLGKCNEVVDFV 230
+T + MRHY + + V + R ++++ K TVPNL + ++ +
Sbjct: 196 RETGEISMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLI 246
Score = 49.3 bits (116), Expect = 8e-05
Identities = 22/42 (52%), Positives = 36/42 (85%)
Query: 264 KKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVVKTEDE 305
+K +IKL E+GPRLT++L+KIE+G+ +G+VL+H+ V K+ +E
Sbjct: 322 RKKAIKLTELGPRLTLKLVKIEDGICSGKVLHHEFVQKSSEE 363
>gb|AAH00535.1|AAH00535 (BC000535) Unknown (protein for MGC:3007) [Homo sapiens]
Length = 251
Score = 64.9 bits (156), Expect = 2e-09
Identities = 58/221 (26%), Positives = 102/221 (45%), Gaps = 30/221 (13%)
Query: 209 VQKIVKGTVPNLGKCNEVVDFV-TKDGYXXXXXXXXXXQSHVVLAQTLKSKGNLEDKKSS 267
++K+++ PN+ + ++ + + T G + L Q + +GN+ ++S+
Sbjct: 1 MKKLLQEKFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQSA 60
Query: 268 IKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVVKTEDEKETXXXXXXXXXXXXXXXXXXX 327
++L EIGPR+T+QLIK++EG+ G+V++H V KTE+E +
Sbjct: 61 VRLTEIGPRMTLQLIKVQEGVGEGKVMFHSFVSKTEEELQAILEAKEKKLRLKAQRQAQQ 120
Query: 328 AENRARNLKLKKDEKWAA----KRAAEGRTDSD----PEDDAE----------------Y 363
A+N R + ++ + + K+A G +D + P A Y
Sbjct: 121 AQNVQRKQEQREAHRKKSLEGMKKARVGGSDEEASGIPSRTASLELGEDDDEQEDDDIEY 180
Query: 364 YKEEVGEEPDEELFKMEAKSSRKRPSLGGGMKYKNKRAKLD 404
+ + VGE P E+LF EAK R S G K KR ++D
Sbjct: 181 FCQAVGEAPSEDLFP-EAKQKRLAKSPG----RKRKRWEMD 216
>ref|NP_014565.1| Essential nucleolar protein required for biogenesis of the 60S
ribosomal subunit; homologue of BRIX (Biogenesis of
ribosomes in Xenopus); Brx1p [Saccharomyces cerevisiae]
pir||S66770 probable membrane protein YOL077c - yeast (Saccharomyces
cerevisiae)
emb|CAA99087.1| (Z74819) ORF YOL077c [Saccharomyces cerevisiae]
Length = 291
Score = 34.5 bits (78), Expect = 2.3
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 251 LAQTLKSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHD 297
++ + K+K ED + I L EIGPR M +I I EG G +Y +
Sbjct: 193 ISHSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYEN 239
CPU time: 50.85 user secs. 1.17 sys. secs 52.02 total secs.
Database: nr
Posted date: Feb 10, 2001 7:10 PM
Number of letters in database: 195,544,254
Number of sequences in database: 618,844
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151746947
Number of Sequences: 618844
Number of extensions: 5639653
Number of successful extensions: 20028
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 19546
Number of HSP's gapped (non-prelim): 264
length of query: 460
length of database: 195,544,254
effective HSP length: 60
effective length of query: 400
effective length of database: 158,413,614
effective search space: 63365445600
effective search space used: 63365445600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 73 (32.8 bits)