PRENbase - Database of Prenylated Proteins
Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation

CLUSTER parameter selection REQUIRE one of the features for at least one member of listed clusters: Status-KNOWN Status-LIKELY Status-NEW Mammalia Fungi EXCLUDE clusters with the following features for at least one member: Status-OUT-OF-CONTEXT Other features for cluster members are ALLOWED. Minimum cluster-size: 1

SEQUENCE parameter selection INCLUDE entries with the following features: FT-substrate(s) Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota EXCLUDE entries with the following features: GGT1-substrate(s) GGT2-substrate(s) Synthetic-constructs

Ranked by phylogenetic complexity of full cluster

Querycode: cs2220ce111ct11112111112111cm1se200st00202222222221r4 (save for easy recovery of the identical query parameters)

Clusters								Selected Sequences
General Information				Stats				Stats			Enzyme			Taxonomic Kingdom			Taxonomic Detail Eukaryota
Status	Rank	ClustID	Name	Pren	Total	PC	EvO	Number	PC	EvO	FT	GGT1	GGT2	Viruses	Synthetic	Eukaryota	Mammalia	Birds	Amphibia	Fishes	Insecta	Nematoda	Fungi	Plants	Other
+	1	3074	Ras/Ral/Rap - small GTPases	374	957	59.250	146.161	100 Explore	29.250	10.449	100	0	0	7	0	93	24	3	7	9	11	8	25	0	6
+	2	54639180	Rho/Rac - small GTPases	425	814	49.000	221.898	56 Explore	15.167	3.853	56	0	0	0	0	56	15	3	1	6	0	0	16	5	10
+	3	23509581	DnaJ-like heat shock chaperones	115	3302	45.833	4.005	111 Explore	45.000	3.731	111	0	0	1	0	110	26	4	6	3	5	4	24	29	9
+	4	38109387	nucleosome assembly protein NAP-1-like	28	88	8.333	8.909	28 Explore	8.333	8.909	28	0	0	0	0	28	8	1	3	2	0	0	14	0	0
?	5	27370917	cyclophilin, peptidyl-prolyl cis-trans isomerase-like	16	1229	6.500	0.208	12 Explore	5.500	0.117	12	0	0	0	0	12	2	0	2	0	3	0	1	1	3
?	6	50759663	WD40 beta propellers and TPR repeats	9	641	2.917	0.126	8 Explore	2.500	0.100	8	0	0	0	0	8	4	1	0	1	0	1	1	0	0

Your query selected 315 sequences in 6 clusters.