PRENbase - Database of Prenylated Proteins
Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation

CLUSTER parameter selection

REQUIRE one of the features for at least one member of listed clusters:
Status-KNOWN Status-LIKELY Status-NEW
EXCLUDE clusters with the following features for at least one member:
Status-OUT-OF-CONTEXT
Other features for cluster members are ALLOWED.
Minimum cluster-size: 1

SEQUENCE parameter selection

INCLUDE entries with the following features:
Viruses
EXCLUDE entries with the following features:
Synthetic-constructs Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota
Ranked by evOluation of full cluster

Querycode: cs2220ce111ct11111111111111cm1se111st00200000000001r2 (save for easy recovery of the identical query parameters)
 Clusters  Selected Sequences
General Information Stats Stats Enzyme Taxonomic Kingdom Taxonomic Detail Eukaryota
Status Rank ClustID Name Pren Total PC EvO Number PC EvO FT GGT1 GGT2 Viruses Synthetic Eukaryota Mammalia Birds Amphibia Fishes Insecta Nematoda Fungi Plants Other
+ 1 46229098 Rab - small GTPases 1314 2725 10.417 633.613 1
Explore		 0.083 0.000 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0
+ 2 3074 Ras/Ral/Rap - small GTPases 374 957 6.583 146.161 10
Explore		 0.250 0.104 10 3 0 10 0 0 0 0 0 0 0 0 0 0 0
+ 3 38636652 Hepatitis Delta antigen 97 333 0.250 28.255 97
Explore		 0.250 28.255 97 0 0 97 0 0 0 0 0 0 0 0 0 0 0
+ 4 23509581 DnaJ-like heat shock chaperones 115 3302 4.583 4.005 1
Explore		 0.083 0.000 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
? 5 32400670 unknown, virus 3 3 0.167 3.000 3
Explore		 0.167 3.000 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
# 6 33694843 TPA: ORF1A 2 2 0.167 2.000 2
Explore		 0.167 2.000 2 2 0 2 0 0 0 0 0 0 0 0 0 0 0
# 7 423954 ORF3 protein - coconut foliar decay virus 2 2 0.083 2.000 2
Explore		 0.083 2.000 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
# 8 19773715 ORF105R 2 2 0.167 2.000 2
Explore		 0.167 2.000 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
? 9 17016842 wsv447, WSSV507 3 5 0.083 1.800 3
Explore		 0.083 1.800 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
? 10 7689130 RNA replicase beta chain, RNA-directed RNA polymerase beta chain 5 24 0.167 1.042 5
Explore		 0.167 1.042 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0
# 11 22671546 p34 1 1 0.083 1.000 1
Explore		 0.083 1.000 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
# 12 1185072 unnamed protein product 1 1 0.083 1.000 1
Explore		 0.083 1.000 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 13 55818998 unknown 1 1 0.083 1.000 1
Explore		 0.083 1.000 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 14 55819303 unknown 1 1 0.083 1.000 1
Explore		 0.083 1.000 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 15 6175667 ORF23 1 1 0.083 1.000 1
Explore		 0.083 1.000 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0
# 16 1492098 MC155R 1 1 0.083 1.000 1
Explore		 0.083 1.000 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0
# 17 30044091 hypothetical protein Rm378p101 1 1 0.083 1.000 1
Explore		 0.083 1.000 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0
# 18 9628119 pL83L 1 1 0.083 1.000 1
Explore		 0.083 1.000 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0
# 19 15042245 131L 1 1 0.083 1.000 1
Explore		 0.083 1.000 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 20 8650494 162R 1 1 0.083 1.000 1
Explore		 0.083 1.000 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 21 55819502 unknown 1 1 0.083 1.000 1
Explore		 0.083 1.000 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 22 51557557 US2 protein 2 5 0.167 0.800 2
Explore		 0.167 0.800 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
? 23 29692427 WSSV307, wsv252 3 13 0.167 0.692 3
Explore		 0.167 0.692 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
# 24 762817 TS9 protein 1 2 0.083 0.500 1
Explore		 0.083 0.500 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 25 37699739 unknown 1 2 0.083 0.500 1
Explore		 0.083 0.500 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 26 55819008 unknown 1 2 0.083 0.500 1
Explore		 0.083 0.500 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 27 55819670 unknown 1 2 0.083 0.500 1
Explore		 0.083 0.500 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0
+ 28 2653356 US2 tegument protein 3 22 0.250 0.409 3
Explore		 0.250 0.409 3 3 0 3 0 0 0 0 0 0 0 0 0 0 0
# 29 14591782 ORF27 1 3 0.083 0.333 1
Explore		 0.083 0.333 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 30 33694535 TPA: ORF9 2 15 0.167 0.267 2
Explore		 0.167 0.267 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
# 31 19881050 glycoprotein UL20 1 4 0.083 0.250 1
Explore		 0.083 0.250 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
+ 32 55652440 protein phosphatase 1 regulatory subunit 16B TIMAP, MYPT3 myosin phosphatase targeting subunit 3, Ankyrin repeat proteins 31 4193 1.333 0.229 2
Explore		 0.167 0.001 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
# 33 1353465 tat gene product 1 5 0.000 0.200 1
Explore		 0.000 0.200 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 34 136858 Protein UL24 homolog 2 25 0.000 0.160 2
Explore		 0.000 0.160 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
# 35 33330466 6 kDa protein 1 11 0.083 0.091 1
Explore		 0.083 0.091 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
? 36 10764358 non-structural 5A protein + synthetic constructs 14 2395 0.167 0.082 1
Explore		 0.083 0.000 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 37 38000561 127R 1 18 0.083 0.056 1
Explore		 0.083 0.056 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 38 3510320 dUTPase 1 27 0.083 0.037 1
Explore		 0.083 0.037 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 39 37499323 fibroblast growth factor 1 27 0.083 0.037 1
Explore		 0.083 0.037 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 40 31242433 ENSANGP00000022583 2 123 0.167 0.033 1
Explore		 0.083 0.008 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 41 40555961 CNPV023 vaccinia C4L/C10L-like protein 1 33 0.083 0.030 1
Explore		 0.083 0.030 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
# 42 3192709 gp26; UmuD 1 92 0.083 0.011 1
Explore		 0.083 0.011 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
# 43 3510305 hemagglutinin-neuraminidase 1 291 0.083 0.003 1
Explore		 0.083 0.003 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 44 61322 unnamed protein product 1 370 0.083 0.003 1
Explore		 0.083 0.003 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 45 31442135 PB2 protein 1 594 0.083 0.002 1
Explore		 0.083 0.002 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
# 46 5805267 nef protein 1 3664 0.083 0.000 1
Explore		 0.083 0.000 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Your query selected 170 sequences in 46 clusters.