PRENbase - Database of Prenylated Proteins
Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation

CLUSTER parameter selection REQUIRE one of the features for at least one member of listed clusters: Status-KNOWN EXCLUDE clusters with the following features for at least one member: Status-LIKELY Status-NEW Status-OUT-OF-CONTEXT Other features for cluster members are ALLOWED. Minimum cluster-size: 1

SEQUENCE parameter selection INCLUDE entries with the following features: Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota EXCLUDE entries with the following features: Synthetic-constructs

Ranked by evOluation of full cluster

Querycode: cs2000ce111ct11111111111111cm1se111st00202222222221r2 (save for easy recovery of the identical query parameters)

Clusters								Selected Sequences
General Information				Stats				Stats			Enzyme			Taxonomic Kingdom			Taxonomic Detail Eukaryota
Status	Rank	ClustID	Name	Pren	Total	PC	EvO	Number	PC	EvO	FT	GGT1	GGT2	Viruses	Synthetic	Eukaryota	Mammalia	Birds	Amphibia	Fishes	Insecta	Nematoda	Fungi	Plants	Other
+	1	46229098	Rab - small GTPases	1314	2725	104.167	633.613	1304 Explore	103.333	624.006	167	45	1279	1	0	1303	344	44	66	100	109	57	160	261	162
+	2	54639180	Rho/Rac - small GTPases	425	814	63.000	221.898	425 Explore	63.000	221.898	414	369	0	0	0	425	89	15	20	40	21	20	125	51	44
+	3	3074	Ras/Ral/Rap - small GTPases	374	957	59.250	146.161	372 Explore	59.250	144.602	368	271	1	10	0	362	97	12	26	41	35	20	90	0	41
+	4	13384618	G gamma 2/4/10...	49	83	10.500	28.928	49 Explore	10.500	28.928	49	49	0	0	0	49	22	2	6	11	5	2	0	0	1
+	5	38636652	Hepatitis Delta antigen	97	333	0.250	28.255	97 Explore	0.250	28.255	97	0	0	97	0	0	0	0	0	0	0	0	0	0	0
+	6	47835006	phosphorylase B kinase alpha/beta	37	92	8.000	14.880	37 Explore	8.000	14.880	37	0	0	0	0	37	18	1	0	2	13	2	0	0	1
+	7	10176908	CCH - Copper chaperone	11	12	0.417	10.083	11 Explore	0.417	10.083	11	8	0	0	0	11	0	0	0	0	0	0	0	11	0
+	8	34784026	Pex19/PxF	18	33	5.417	9.818	18 Explore	5.417	9.818	18	14	0	0	0	18	10	0	1	1	1	0	5	0	0
+	9	7512963	Paralemmin	19	38	2.333	9.500	19 Explore	2.333	9.500	19	19	0	0	0	19	13	4	1	1	0	0	0	0	0
+	10	50728808	Dexamethasone-induced Ras - RASD1, RASD2	20	43	2.667	9.302	20 Explore	2.667	9.302	20	0	0	0	0	20	14	2	2	2	0	0	0	0	0
+	11	38109387	nucleosome assembly protein NAP-1-like	28	88	8.333	8.909	28 Explore	8.333	8.909	28	0	0	0	0	28	8	1	3	2	0	0	14	0	0
+	12	41152369	G gamma 1/11...	15	28	1.750	8.036	15 Explore	1.750	8.036	15	0	0	0	0	15	10	0	1	4	0	0	0	0	0
+	13	19067861	Rab3A-C small GTPase	22	63	1.167	7.683	21 Explore	1.000	7.000	0	0	21	0	0	21	20	1	0	0	0	0	0	0	0
+	14	14589854	PRL-1 to 3 tyrosine phosphatase	45	286	9.917	7.080	45 Explore	9.917	7.080	45	13	0	0	0	45	20	3	6	7	6	2	0	0	1
+	15	50308447	G gamma of pheromone receptor	6	6	0.417	6.000	6 Explore	0.417	6.000	6	5	0	0	0	6	0	0	0	0	0	0	6	0	0
+	16	50420547	Synaptobrevin-like snare protein Ykt6	32	182	13.000	5.626	32 Explore	13.000	5.626	32	30	0	0	0	32	6	0	3	1	0	0	14	5	3
+	17	30984062	putative syntaxin-binding complexin III/IV	13	33	1.250	5.121	13 Explore	1.250	5.121	13	13	0	0	0	13	8	0	1	4	0	0	0	0	0
+	18	23509581	DnaJ-like heat shock chaperones	115	3302	45.833	4.005	114 Explore	45.000	3.936	113	3	0	1	0	113	29	4	6	3	5	4	24	29	9
+	19	15030162	interferon-inducible guanylate-binding protein - GBP	26	175	2.667	3.863	26 Explore	2.667	3.863	21	18	0	0	0	26	21	1	3	1	0	0	0	0	0
+	20	227255	Rod cGMP-specific cyclic phosphodiesterase alpha & beta	45	572	5.417	3.540	45 Explore	5.417	3.540	45	24	0	0	0	45	34	1	3	3	4	0	0	0	0
+	21	30794282	CNP cyclic nucleotide phosphodiesterase	17	82	2.500	3.524	17 Explore	2.500	3.524	17	16	0	0	0	17	12	0	2	3	0	0	0	0	0
+	22	6324184	pheromone/mating factor	3	3	0.167	3.000	3 Explore	0.167	3.000	3	0	0	0	0	3	0	0	0	0	0	0	3	0	0
+	23	12655647	LIM domains - Prickle-like; LMO6	51	909	8.750	2.861	51 Explore	8.750	2.861	51	1	0	0	0	51	24	1	3	7	11	4	0	0	1
+	24	1835940	pheromone/mating factor	2	2	0.167	2.000	2 Explore	0.167	2.000	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0
+	25	38565962	INPP5A protein, inositol-1,4,5-trisphosphate 5-phosphatase, inositol-polyphosphate 5-phosphatase EC 3.1.3.	7	31	1.250	1.581	7 Explore	1.250	1.581	7	0	0	0	0	7	5	1	1	0	0	0	0	0	0
+	26	51716991	putative prenylated protein of fungal and metazoan origin, 0610010K06Rik protein	12	108	3.000	1.333	12 Explore	3.000	1.333	12	0	0	0	0	12	8	1	0	2	0	1	0	0	0
+	27	7488685	CCH - Copper chaperone	2	3	0.000	1.333	2 Explore	0.000	1.333	2	2	0	0	0	2	0	0	0	0	0	0	0	2	0
+	28	1813600	pheromone precursor Bbp11	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
+	29	7488686	CCH - Copper chaperone	1	1	0.000	1.000	1 Explore	0.000	1.000	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0
+	30	16660147	Lamin - nuclear intermediate filament; CENP-F >>linked over coiled coil<<	95	9803	16.000	0.921	95 Explore	16.000	0.921	95	65	0	0	0	95	48	5	12	11	6	3	1	0	9
+	31	12803177	CLN3 Batten disease protein - Battenin	6	45	0.167	0.800	6 Explore	0.167	0.800	6	0	0	0	0	6	6	0	0	0	0	0	0	0	0
+	32	28827280	Floral homeotic MADS box protein APETALA1	17	408	0.750	0.708	17 Explore	0.750	0.708	17	0	0	0	0	17	0	0	0	0	0	0	0	17	0
+	33	50757187	phosphatidylinositol 4,5 bisphosphate 5-phosphatase	15	384	1.500	0.586	15 Explore	1.500	0.586	15	6	0	0	0	15	12	1	0	0	2	0	0	0	0
+	34	2653356	US2 tegument protein	3	22	0.250	0.409	3 Explore	0.250	0.409	3	3	0	3	0	0	0	0	0	0	0	0	0	0	0
+	35	1172501	prostacyclin receptor	8	168	0.417	0.381	8 Explore	0.417	0.381	8	0	0	0	0	8	8	0	0	0	0	0	0	0	0
+	36	50417428	Kinases - Serine/threonine-protein kinase 11 LKB1; calcium/calmodulin-dependent protein kinase IG; rhodopsin kinase; G protein-coupled receptor kinases	55	12044	14.667	0.251	55 Explore	14.667	0.251	53	33	0	0	0	55	27	3	1	10	6	6	1	0	1
+	37	55652440	protein phosphatase 1 regulatory subunit 16B TIMAP, MYPT3 myosin phosphatase targeting subunit 3, Ankyrin repeat proteins	31	4193	9.333	0.229	30 Explore	8.750	0.215	30	11	0	2	0	28	16	3	0	1	4	3	0	0	1
+	38	55662717	retinitis pigmentosa GTPase regulator	11	572	0.417	0.212	11 Explore	0.417	0.212	11	11	0	0	0	11	11	0	0	0	0	0	0	0	0
+	39	38606970	phospholipase A2	5	122	0.083	0.205	5 Explore	0.083	0.205	5	0	0	0	0	5	5	0	0	0	0	0	0	0	0
+	40	6320138	Pex19 yeast	1	11	0.083	0.091	1 Explore	0.083	0.091	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
+	41	382658	centromeric CENP-E/kinesin	10	4864	2.667	0.021	10 Explore	2.667	0.021	10	2	0	0	0	10	4	0	1	0	2	0	0	0	3

Your query selected 3049 sequences in 41 clusters.