PRENbase

PRENbase - Database of Prenylated Proteins
Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation

CLUSTER parameter selection

REQUIRE one of the features for at least one member of listed clusters:
Status-LIKELY
EXCLUDE clusters with the following features for at least one member:
Status-KNOWN Status-NEW Status-OUT-OF-CONTEXT
Other features for cluster members are ALLOWED.
Minimum cluster-size: 1

SEQUENCE parameter selection

INCLUDE entries with the following features:
Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota
EXCLUDE entries with the following features:
Synthetic-constructs

Ranked by evOluation of full cluster

Querycode: cs0200ce111ct11111111111111cm1se111st00202222222221r2 (save for easy recovery of the identical query parameters)

*Clusters*								*Selected Sequences*
General Information				Stats				Stats			Enzyme			Taxonomic Kingdom			Taxonomic Detail Eukaryota
Status	Rank	ClustID	Name	Pren	Total	PC	EvO	Number	PC	EvO	FT	GGT1	GGT2	Viruses	Synthetic	Eukaryota	Mammalia	Birds	Amphibia	Fishes	Insecta	Nematoda	Fungi	Plants	Other
*	1	42570277	CCH - copper chaperone related	33	85	0.500	12.812	33 Explore	0.500	12.812	33	31	0	0	0	33	0	0	0	0	0	0	0	33	0
*	2	6728965	CCH - Copper chaperones	14	19	0.250	10.316	14 Explore	0.250	10.316	14	12	0	0	0	14	0	0	0	0	0	0	0	14	0
*	3	37589870	G gamma 13	13	17	5.417	9.941	13 Explore	5.417	9.941	13	13	0	0	0	13	4	1	2	2	4	0	0	0	0
*	4	8978333	CCH - Copper chaperone	13	20	0.167	8.450	13 Explore	0.167	8.450	13	11	0	0	0	13	0	0	0	0	0	0	0	13	0
*	5	50916517	CCH - Copper chaperone	8	9	0.083	7.111	8 Explore	0.083	7.111	8	8	0	0	0	8	0	0	0	0	0	0	0	8	0
*	6	50929371	CCH - Copper chaperone	12	23	0.833	6.261	12 Explore	0.833	6.261	12	1	0	0	0	12	1	0	0	0	0	0	0	11	0
*	7	218049	pheromone/mating factor - rhodotorucine A precursor	6	6	0.083	6.000	6 Explore	0.083	6.000	6	0	0	0	0	6	0	0	0	0	0	0	6	0	0
*	8	6014618	pheromone/mating factor	4	4	0.167	4.000	4 Explore	0.167	4.000	4	0	0	0	0	4	0	0	0	0	0	0	4	0	0
*	9	15219992	CCH - Copper chaperone	4	4	0.167	4.000	4 Explore	0.167	4.000	4	4	0	0	0	4	0	0	0	0	0	0	0	4	0
*	10	24417368	CCH - Copper chaperone	4	5	0.083	3.200	4 Explore	0.083	3.200	4	3	0	0	0	4	0	0	0	0	0	0	0	4	0
*	11	37626056	pheromone/mating factor	4	5	0.083	3.200	4 Explore	0.083	3.200	4	0	0	0	0	4	0	0	0	0	0	0	4	0	0
*	12	50920309	CCH - Copper chaperone	4	5	0.167	3.200	4 Explore	0.167	3.200	4	0	0	0	0	4	0	0	0	0	0	0	0	4	0
*	13	49899868	Ras-like	4	5	1.000	3.200	4 Explore	1.000	3.200	4	4	0	0	0	4	2	0	1	1	0	0	0	0	0
*	14	3242079	CCH - Copper chaperone	5	8	0.167	3.125	5 Explore	0.167	3.125	5	5	0	0	0	5	0	0	0	0	0	0	0	5	0
*	15	3451035	pheromone/mating factor	3	3	0.167	3.000	3 Explore	0.167	3.000	3	0	0	0	0	3	0	0	0	0	0	0	3	0	0
*	16	26452351	CCH - Copper chaperone	3	3	0.167	3.000	3 Explore	0.167	3.000	3	1	0	0	0	3	0	0	0	0	0	0	0	3	0
*	17	19112070	pheromone/mating factor	3	3	0.083	3.000	3 Explore	0.083	3.000	3	0	0	0	0	3	0	0	0	0	0	0	3	0	0
*	18	41209146	pheromone/mating factor	3	3	0.083	3.000	3 Explore	0.083	3.000	3	0	0	0	0	3	0	0	0	0	0	0	3	0	0
*	19	50924001	CCH - Copper chaperone OSJNBb0014D23	4	6	0.083	2.667	4 Explore	0.083	2.667	4	4	0	0	0	4	0	0	0	0	0	0	0	4	0
*	20	6862917	CCH - Copper chaperone	6	15	0.083	2.400	6 Explore	0.083	2.400	6	6	0	0	0	6	0	0	0	0	0	0	0	6	0
*	21	30679432	CCH - Copper chaperone	3	4	0.083	2.250	3 Explore	0.083	2.250	3	3	0	0	0	3	0	0	0	0	0	0	0	3	0
*	22	37626081	pheromone/mating factor	3	4	0.083	2.250	3 Explore	0.083	2.250	3	0	0	0	0	3	0	0	0	0	0	0	3	0	0
*	23	4680375	pheromone/mating factor	2	2	0.167	2.000	2 Explore	0.167	2.000	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0
*	24	3451043	pheromone/mating factor	2	2	0.167	2.000	2 Explore	0.167	2.000	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0
*	25	37626083	pheromone/mating factor	2	2	0.083	2.000	2 Explore	0.083	2.000	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0
*	26	3451045	pheromone/mating factor	2	2	0.167	2.000	2 Explore	0.167	2.000	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0
*	27	37105892	visual GTP-binding protein gamma subunit	2	2	0.167	2.000	2 Explore	0.167	2.000	2	0	0	0	0	2	0	0	0	0	0	0	0	0	2
*	28	2865510	pheromone/mating factor	2	2	0.167	2.000	2 Explore	0.167	2.000	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0
*	29	6017103	Pex19 plant	3	5	0.083	1.800	3 Explore	0.083	1.800	3	3	0	0	0	3	0	0	0	0	0	0	0	3	0
*	30	51783965	Paralemmin 2	6	20	0.250	1.800	6 Explore	0.250	1.800	6	6	0	0	0	6	6	0	0	0	0	0	0	0	0
*	31	7573325	G gamma	3	5	0.083	1.800	3 Explore	0.083	1.800	3	3	0	0	0	3	0	0	0	0	0	0	0	3	0
*	32	18091801	pheromone/mating factor - MFalpha	5	14	0.250	1.786	5 Explore	0.250	1.786	5	0	0	0	0	5	0	0	0	0	0	0	5	0	0
*	33	25404103	CCH - Copper chaperone	6	21	0.333	1.714	6 Explore	0.333	1.714	6	6	0	0	0	6	0	0	0	0	0	0	0	6	0
*	34	45433315	plant nucleosome assembly protein NAP-1-like	17	185	0.583	1.562	17 Explore	0.583	1.562	17	0	0	0	0	17	0	0	0	0	0	0	0	17	0
*	35	34879240	Ras-like	2	3	0.167	1.333	2 Explore	0.167	1.333	2	2	0	0	0	2	2	0	0	0	0	0	0	0	0
*	36	42554990	G gamma of pheromone receptor	3	7	0.250	1.286	3 Explore	0.250	1.286	3	2	0	0	0	3	0	0	0	0	0	0	3	0	0
*	37	34902772	CCH - Copper chaperone	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0
*	38	14269440	pheromone/mating factor	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	39	1813601	pheromone precursor Bbp12	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	40	41209149	lipopeptide mating pheromone precursor Bbp28	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	41	22652060	pheromone precursor MFa-1	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0
*	42	37626087	pheromone precursor Phb3.3 B47	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0
*	43	41209147	lipopeptide mating pheromone precursor Bap33	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	44	5917793	pheromone Mfa2	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	45	15233077	copper-binding family protein	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0
*	46	9755780	putative protein	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	0	0	1	0
*	47	27549461	pheromone/mating factor	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	48	17553610	Pex19/PxF	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	1	0	0	0
*	49	3451039	pheromone/mating factor	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	50	44151650	putative PDphb1 mating pheromone precursor	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	51	14269442	peptide mating pheromone precursor Bbp2-2	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	52	2290410	mating type 2 pheromone precursor	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0
*	53	14269438	peptide mating pheromone precursor Bbp2-7	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	54	51828604	PREDICTED: similar to RAS-like, family 10, member B; ras-like protein VTS58635	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0
*	55	37626066	pheromone precursor Phb2.2 B43	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	56	4973425	pheromone/mating factor	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	57	4063749	hypothetical protein	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	0	0	1	0
*	58	3451041	pheromone	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	59	21554311	CCH - Copper chaperone	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	0	0	1	0
*	60	11994385	unnamed protein product	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0
*	61	25408515	CCH - Copper chaperone	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	0	0	1	0
*	62	37626075	pheromone precursor Phb3.3 B43	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0
*	63	28830075	similar to Dictyostelium discoideum Slime mold. G protein gamma-subunit	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	0	0	0	1
*	64	21644573	Rho-like	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0
*	65	400251	pheromone/mating factor	1	1	0.000	1.000	1 Explore	0.000	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	66	5454030	Rab-like	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0
*	67	34902774	CCH - Copper chaperone	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0
*	68	39585080	Hypothetical protein CBG06892	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	1	0	0	0
*	69	19113473	G gamma	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	70	3023398	Mating-type pheromone BAP11 precursor	1	1	0.000	1.000	1 Explore	0.000	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	71	14269434	pheromone/mating factor	1	1	0.083	1.000	1 Explore	0.083	1.000	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0
*	72	14269436	pheromone/mating factor	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	73	41209145	lipopeptide mating pheromone precursor Bap31	1	1	0.083	1.000	1 Explore	0.083	1.000	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	74	55595913	EH domain binding - EHBP1, tangerin	22	574	1.333	0.843	22 Explore	1.333	0.843	22	0	0	0	0	22	17	0	0	0	5	0	0	0	0
*	75	25989583	MATa pheromone, MFa3p	3	12	0.250	0.750	3 Explore	0.250	0.750	3	0	0	0	0	3	0	0	0	0	0	0	3	0	0
*	76	46445135	potential Ras family GTPase	1	2	0.083	0.500	1 Explore	0.083	0.500	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0
*	77	46228905	synaptobrevin/VAMP-like protein	1	2	0.083	0.500	1 Explore	0.083	0.500	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1
*	78	50923991	CCH - Copper chaperone OSJNBb0014D23.11	1	2	0.083	0.500	1 Explore	0.083	0.500	1	1	0	0	0	1	0	0	0	0	0	0	0	1	0
*	79	21361653	hypothetical protein FLJ20364	4	37	0.250	0.432	4 Explore	0.250	0.432	4	0	0	0	0	4	4	0	0	0	0	0	0	0	0
*	80	6679529	prostaglandin E receptor subtype EP2	2	10	0.083	0.400	2 Explore	0.083	0.400	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0
*	81	34852316	Rab-like	3	24	0.750	0.375	3 Explore	0.750	0.375	0	0	3	0	0	3	1	1	0	1	0	0	0	0	0
*	82	13161382	small Lamins, coiled coil, 40255119 with RAB domain	25	1865	5.833	0.335	25 Explore	5.833	0.335	22	10	3	0	0	25	6	2	0	6	0	1	0	0	10
*	83	50928717	OSJNBa0008M17.10	1	3	0.083	0.333	1 Explore	0.083	0.333	1	1	0	0	0	1	0	0	0	0	0	0	0	1	0
*	84	55616121	PREDICTED: similar to DnaJ Hsp40 homolog, subfamily B, member 2; heat shock protein, neuronal DNAJ-like 1	1	4	0.083	0.250	1 Explore	0.083	0.250	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0
*	85	51474992	PREDICTED: hypothetical protein XP_292820	2	19	0.167	0.211	2 Explore	0.167	0.211	2	2	0	0	0	2	2	0	0	0	0	0	0	0	0
*	86	41618324	TPA: HDC11342	1	5	0.083	0.200	1 Explore	0.083	0.200	1	1	0	0	0	1	0	0	0	0	1	0	0	0	0
*	87	51859154	TRIP protein, transcription repressor, in FLII: leucine rich repeat interacting protein 1, PRO1252	6	183	0.333	0.197	6 Explore	0.333	0.197	6	0	0	0	0	6	6	0	0	0	0	0	0	0	0
*	88	39597678	EF-hand + Rab	2	22	0.167	0.182	2 Explore	0.167	0.182	0	0	2	0	0	2	0	0	0	0	0	2	0	0	0
*	89	47122956	ras-dva small GTPase	8	355	2.333	0.180	8 Explore	2.333	0.180	8	0	0	0	0	8	0	2	1	2	3	0	0	0	0
*	90	47213429	unnamed protein product	1	9	0.083	0.111	1 Explore	0.083	0.111	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0
*	91	54655751	hypothetical protein Chro.60069	1	10	0.083	0.100	1 Explore	0.083	0.100	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1
*	92	14595125	GFP-Rab-RBD-GFP construct	6	688	0.167	0.052	1 Explore	0.083	0.001	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0
*	93	19173266	Rab-related GTPases	4	352	0.750	0.045	4 Explore	0.750	0.045	1	1	3	0	0	4	0	2	0	0	0	1	1	0	0
*	94	64735	xlgv7 gene product	1	27	0.083	0.037	1 Explore	0.083	0.037	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0
*	95	28828907	Rab-like	1	33	0.083	0.030	1 Explore	0.083	0.030	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1
*	96	48101558	similar to Pter-prov protein	1	36	0.083	0.028	1 Explore	0.083	0.028	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0
*	97	55664334	PREDICTED: similar to Rap2c protein	1	50	0.083	0.020	1 Explore	0.083	0.020	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0
*	98	51764239	PREDICTED: RIKEN cDNA 4432412L15	1	56	0.083	0.018	1 Explore	0.083	0.018	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0
*	99	26325132	unnamed protein product	1	74	0.083	0.014	1 Explore	0.083	0.014	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0
*	100	55638107	PREDICTED: similar to Rho-related GTP-binding protein Rho6 Rnd1	2	335	0.167	0.012	2 Explore	0.167	0.012	2	1	0	0	0	2	2	0	0	0	0	0	0	0	0
*	101	50405040	unknown	4	1902	0.333	0.008	3 Explore	0.250	0.005	1	3	0	0	0	3	0	0	0	0	0	0	0	0	3
*	102	50745557	PREDICTED: similar to cone arrestin	1	138	0.083	0.007	1 Explore	0.083	0.007	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0
*	103	46098133	Kinases - IRAK-4 mutant form 1	5	5281	1.333	0.005	5 Explore	1.333	0.005	5	1	0	0	0	5	2	0	0	0	0	0	1	1	1
*	104	50759027	similar to Laminin	2	1038	0.333	0.004	2 Explore	0.333	0.004	1	2	0	0	0	2	0	1	0	0	1	0	0	0	0
*	105	24620455	unrelated IGcam and LCR proteins	4	4314	0.500	0.004	4 Explore	0.500	0.004	4	1	0	0	0	4	0	0	0	0	0	3	1	0	0
*	106	1262300	casein kinase II alpha	1	479	0.000	0.002	1 Explore	0.000	0.002	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0

Your query selected 364 sequences in 106 clusters.