PRENbase - Database of Prenylated Proteins
Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation

CLUSTER parameter selection

REQUIRE one of the features for at least one member of listed clusters:
Status-NEW
EXCLUDE clusters with the following features for at least one member:
Status-KNOWN Status-LIKELY Status-OUT-OF-CONTEXT
Other features for cluster members are ALLOWED.
Minimum cluster-size: 3

SEQUENCE parameter selection

INCLUDE entries with the following features:
Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota
EXCLUDE entries with the following features:
Synthetic-constructs
Ranked by evOluation of full cluster

Querycode: cs0020ce111ct11111111111111cm3se111st00202222222221r2 (save for easy recovery of the identical query parameters)
 Clusters  Selected Sequences
General Information Stats Stats Enzyme Taxonomic Kingdom Taxonomic Detail Eukaryota
Status Rank ClustID Name Pren Total PC EvO Number PC EvO FT GGT1 GGT2 Viruses Synthetic Eukaryota Mammalia Birds Amphibia Fishes Insecta Nematoda Fungi Plants Other
? 1 35193062 DUF544 - NF-E2 inducible 34 65 11.667 17.785 34
Explore		 11.667 17.785 34 29 0 0 0 34 19 1 1 0 0 2 8 2 1
? 2 22137475 Ubiquitin-like UBL3 17 23 7.000 12.565 17
Explore		 7.000 12.565 17 14 0 0 0 17 5 2 2 2 3 2 1 0 0
? 3 50912815 plant ubiquitin-fold proteins 13 16 0.333 10.562 13
Explore		 0.333 10.562 13 13 0 0 0 13 0 0 0 0 0 0 0 13 0
? 4 27684255 DPCD, possibly involved in primary ciliary dyskinesia 9 18 1.500 4.500 9
Explore		 1.500 4.500 9 0 0 0 0 9 7 1 0 1 0 0 0 0 0
? 5 50253071 OSJNBa0016O02, unknown protein 5 6 0.083 4.167 5
Explore		 0.083 4.167 5 4 0 0 0 5 0 0 0 0 0 0 0 5 0
? 6 40741584 unknown 4 4 0.333 4.000 4
Explore		 0.333 4.000 4 3 0 0 0 4 0 0 0 0 0 0 4 0 0
? 7 55243741 CG15926-PA 4 4 0.333 4.000 4
Explore		 0.333 4.000 4 0 0 0 0 4 0 0 0 0 4 0 0 0 0
? 8 42552618 unknown 4 4 0.250 4.000 4
Explore		 0.250 4.000 4 4 0 0 0 4 0 0 0 0 0 0 4 0 0
? 9 45773854 plant, similar to light stress-responsive one-helix protein-like 4 4 0.083 4.000 4
Explore		 0.083 4.000 2 4 0 0 0 4 0 0 0 0 0 0 0 4 0
? 10 50254999 unknown fungal 11 31 0.833 3.903 11
Explore		 0.833 3.903 11 5 0 0 0 11 0 0 0 0 0 0 11 0 0
? 11 39579685 Hypothetical protein 3 3 0.083 3.000 3
Explore		 0.083 3.000 3 3 0 0 0 3 0 0 0 0 0 3 0 0 0
? 12 39596656 putative prenylated protein, Hypothetical protein 3 3 0.167 3.000 3
Explore		 0.167 3.000 3 0 0 0 0 3 0 0 0 0 0 3 0 0 0
? 13 55633727 unnamed protein, PREDICTED: hypothetical protein 3 3 0.167 3.000 3
Explore		 0.167 3.000 3 3 0 0 0 3 3 0 0 0 0 0 0 0 0
? 14 39587749 unknown 3 3 0.167 3.000 3
Explore		 0.167 3.000 3 0 0 0 0 3 0 0 0 0 0 3 0 0 0
? 15 32400670 unknown, virus 3 3 0.167 3.000 3
Explore		 0.167 3.000 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
? 16 31201945 ENSANGP00000015100, ENSANGP00000027799 3 3 0.167 3.000 3
Explore		 0.167 3.000 3 3 0 0 0 3 0 0 0 0 3 0 0 0 0
? 17 55243227 COG3526, Seleno_W_rel 3 3 0.250 3.000 3
Explore		 0.250 3.000 3 2 0 0 0 3 0 0 0 0 3 0 0 0 0
? 18 45188071 Gis4p, possibly involved in RAS/cAMP signaling 4 6 0.333 2.667 4
Explore		 0.333 2.667 4 4 0 0 0 4 0 0 0 0 0 0 4 0 0
? 19 23170498 SNARE complex synaphin 7 19 0.500 2.579 7
Explore		 0.500 2.579 7 0 0 0 0 7 0 0 0 0 6 0 0 0 1
? 20 53135884 selenoprotein W 7 19 1.500 2.579 7
Explore		 1.500 2.579 7 7 0 0 0 7 3 1 0 3 0 0 0 0 0
? 21 20521916 DUF1339 - possibly integral membrane protein 16 104 4.167 2.462 16
Explore		 4.167 2.462 16 5 0 0 0 16 6 1 0 1 3 5 0 0 0
? 22 40740499 DUF544 5 11 0.417 2.273 5
Explore		 0.417 2.273 5 5 0 0 0 5 0 0 0 0 0 0 5 0 0
? 23 50426781 UCH, Ubiquitin carboxyl-terminal hydrolase 3 4 0.167 2.250 3
Explore		 0.167 2.250 3 1 0 0 0 3 0 0 0 0 0 0 3 0 0
? 24 30353973 unknown, hepatocellular carcinoma 3 4 0.167 2.250 3
Explore		 0.167 2.250 3 0 0 0 0 3 3 0 0 0 0 0 0 0 0
? 25 55664133 novel hypothetical protein FLJ23878, 4933406A14 6 18 0.250 2.000 6
Explore		 0.250 2.000 6 6 0 0 0 6 6 0 0 0 0 0 0 0 0
? 26 24308354 BC008967 protein 8 34 1.500 1.882 8
Explore		 1.500 1.882 8 8 0 0 0 8 6 1 0 1 0 0 0 0 0
? 27 32567236 putative prenylated protein family member, protein T09E8.1 9 44 0.250 1.841 9
Explore		 0.250 1.841 9 0 0 0 0 9 0 0 0 0 0 9 0 0 0
? 28 17016842 wsv447, WSSV507 3 5 0.083 1.800 3
Explore		 0.083 1.800 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
? 29 53850543 unknown protein 3 5 0.167 1.800 3
Explore		 0.167 1.800 3 1 0 0 0 3 0 0 0 0 0 0 0 3 0
? 30 7291746 unknown, LCR pattern similar to brakeless 4 9 0.250 1.778 4
Explore		 0.250 1.778 2 4 0 0 0 4 0 0 0 0 4 0 0 0 0
? 31 21553117 2-5A oligoadenylate synthetase 1 12 90 0.250 1.600 12
Explore		 0.250 1.600 8 12 0 0 0 12 12 0 0 0 0 0 0 0 0
? 32 14289209 immunoglobulin light chain 260 42324 1.000 1.597 260
Explore		 1.000 1.597 260 0 0 0 0 260 219 0 0 41 0 0 0 0 0
? 33 38103903 Pwl1, Pwl2 species-specific avirulence 3 6 0.167 1.500 3
Explore		 0.167 1.500 3 3 0 0 0 3 0 0 0 0 0 0 3 0 0
? 34 50423103 Rcy1p, potential endocytic membrane traffic, recycling protein 6 24 0.500 1.500 6
Explore		 0.500 1.500 5 4 0 0 0 6 0 0 0 0 0 0 6 0 0
? 35 17507377 unknown 3 6 0.167 1.500 3
Explore		 0.167 1.500 3 2 0 0 0 3 0 0 0 0 0 3 0 0 0
? 36 47218849 F-box and leucine-rich repeat 2 32 693 11.083 1.478 31
Explore		 10.500 1.387 31 30 0 0 0 31 17 1 1 3 1 2 6 0 0
? 37 50547231 YlSLS2, Sls2, F-Box domain, Sec10 domain 7 34 0.500 1.441 7
Explore		 0.500 1.441 7 5 0 0 0 7 0 0 0 0 0 0 7 0 0
? 38 49343985 guanylate cyclases - GCB2 32 887 2.000 1.154 32
Explore		 2.000 1.154 30 15 0 0 0 32 10 0 0 0 2 20 0 0 0
? 39 967093 small MutS-related, mismatch repair 8 56 1.333 1.143 8
Explore		 1.333 1.143 8 7 0 0 0 8 0 0 0 0 0 0 7 0 1
? 40 34876869 predicted AN1-like zinc-finger 6 32 1.250 1.125 6
Explore		 1.250 1.125 6 1 0 0 0 6 4 0 0 1 0 0 1 0 0
? 41 7689130 RNA replicase beta chain, RNA-directed RNA polymerase beta chain 5 24 0.167 1.042 5
Explore		 0.167 1.042 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0
? 42 25518327 tetraspanin-like 4 16 0.250 1.000 4
Explore		 0.250 1.000 4 4 0 0 0 4 0 0 0 0 0 0 0 4 0
? 43 30851657 fls485, LOC51066 protein 4 16 0.500 1.000 4
Explore		 0.500 1.000 3 1 0 0 0 4 3 0 1 0 0 0 0 0 0
? 44 32565305 putative prenylated protein, with 2 coiled coil-4 domains; 1N928 3 9 0.167 1.000 3
Explore		 0.167 1.000 3 0 0 0 0 3 0 0 0 0 0 3 0 0 0
? 45 51971455 AIG1 plant resistance to bacteria 12 151 0.333 0.954 12
Explore		 0.333 0.954 8 12 0 0 0 12 0 0 0 0 0 0 0 12 0
? 46 40744684 UCH, COG5077, Ubiquitin carboxyl-terminal hydrolase 3 10 0.250 0.900 3
Explore		 0.250 0.900 3 2 0 0 0 3 0 0 0 0 0 0 3 0 0
? 47 7301271 CG13650-PA, GA12436-PA, RH20440p 3 10 0.167 0.900 3
Explore		 0.167 0.900 0 3 0 0 0 3 0 0 0 0 3 0 0 0 0
? 48 50548227 FOG: TPR repeat, SEL1 3 10 0.250 0.900 3
Explore		 0.250 0.900 3 3 0 0 0 3 0 0 0 0 0 0 3 0 0
? 49 7302280 unknown 3 10 0.250 0.900 3
Explore		 0.250 0.900 3 3 0 0 0 3 0 0 0 0 3 0 0 0 0
? 50 32422695 similar to SKT5, chitin synthase regulatory factor, SEL1-like TPR repeats 13 190 0.583 0.889 13
Explore		 0.583 0.889 13 11 0 0 0 13 0 0 0 0 0 0 13 0 0
? 51 47059053 similar to p75NTR-associated cell death executor, Nerve growth factor receptor associated protein 1, PREDICTED: brain expressed X-linked-like 1 5 31 0.333 0.806 5
Explore		 0.333 0.806 5 0 0 0 0 5 5 0 0 0 0 0 0 0 0
? 52 50806874 Feather keratin, F-ker 10 141 0.167 0.709 10
Explore		 0.167 0.709 10 0 0 0 0 10 0 10 0 0 0 0 0 0 0
? 53 50418525 Zgc:101028 protein, unnamed protein product 3 13 0.167 0.692 3
Explore		 0.167 0.692 3 0 0 0 0 3 0 0 0 3 0 0 0 0 0
? 54 29692427 WSSV307, wsv252 3 13 0.167 0.692 3
Explore		 0.167 0.692 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
? 55 30109229 mannose phosphate isomerase 9 118 1.750 0.686 9
Explore		 1.750 0.686 9 9 0 0 0 9 7 1 0 1 0 0 0 0 0
? 56 30425068 stoned B-like factor SBLF 10 162 0.833 0.617 10
Explore		 0.833 0.617 10 0 0 0 0 10 9 1 0 0 0 0 0 0 0
? 57 17907725 S-locus cysteine-rich protein 3 15 0.167 0.600 3
Explore		 0.167 0.600 3 0 0 0 0 3 0 0 0 0 0 0 0 3 0
? 58 2959748 pepsin inhibitor 3 18 0.083 0.500 3
Explore		 0.083 0.500 3 0 0 0 0 3 0 0 0 0 0 3 0 0 0
? 59 33096712 Zinc finger CCCH type antiviral protein, WWE domain 7 101 0.250 0.485 7
Explore		 0.250 0.485 7 0 0 0 0 7 7 0 0 0 0 0 0 0 0
? 60 50291201 Similar to globins and has a functional heme-binding domain; involved in glucose signaling or metabolism; regulated by Rgt1p 4 34 0.333 0.471 4
Explore		 0.333 0.471 4 4 0 0 0 4 0 0 0 0 0 0 4 0 0
? 61 18373305 arrestin domain containing 2, MGC81105 9 195 1.000 0.415 9
Explore		 1.000 0.415 9 0 0 0 0 9 5 0 2 2 0 0 0 0 0
? 62 26329317 DEAQ RNA-dependent ATPase DQX1 18 784 1.500 0.413 18
Explore		 1.500 0.413 18 0 0 0 0 18 16 0 1 0 1 0 0 0 0
? 63 32404712 hypothetical protein 4 39 0.333 0.410 4
Explore		 0.333 0.410 4 4 0 0 0 4 0 0 0 0 0 0 4 0 0
? 64 39590430 Arsenite inducible RNA associated protein AIP-1 with AN1-like zinc-fingers 3 22 0.167 0.409 3
Explore		 0.167 0.409 3 0 0 0 0 3 0 0 0 0 0 3 0 0 0
? 65 50253017 hypothetical protein, polyserine 4 41 0.083 0.390 4
Explore		 0.083 0.390 4 0 0 0 0 4 0 0 0 0 0 0 0 4 0
? 66 55729784 aspartoacylase 4 41 0.250 0.390 4
Explore		 0.250 0.390 4 0 0 0 0 4 4 0 0 0 0 0 0 0 0
? 67 34866970 phospholipase D-like 5 70 0.250 0.357 5
Explore		 0.250 0.357 5 0 0 0 0 5 5 0 0 0 0 0 0 0 0
? 68 50258215 Activator of chitin synthase Chs3p, SEL1-like TPR repeats 9 242 0.750 0.335 9
Explore		 0.750 0.335 9 8 0 0 0 9 0 0 0 0 0 0 9 0 0
? 69 30089954 homologous to mouse gene PC326, H326, MGC83816 protein, WD40 11 363 1.000 0.333 11
Explore		 1.000 0.333 11 0 0 0 0 11 10 0 1 0 0 0 0 0 0
? 70 32451765 F-box only protein 10 6 111 0.500 0.324 6
Explore		 0.500 0.324 6 6 0 0 0 6 5 0 0 1 0 0 0 0 0
? 71 50311263 ycp4p,localizes cytoplasmic in punctate pattern 8 201 0.583 0.318 8
Explore		 0.583 0.318 8 8 0 0 0 8 0 0 0 0 0 0 8 0 0
? 72 1583849 angiotensin-converting enzyme, peptidyl-dipeptidase A 6 118 0.083 0.305 6
Explore		 0.083 0.305 6 0 0 0 0 6 0 0 0 0 6 0 0 0 0
? 73 41281539 Rho-related BTB domain containing protein 3 10 366 0.833 0.273 10
Explore		 0.833 0.273 10 10 0 0 0 10 9 1 0 0 0 0 0 0 0
? 74 50797895 WWE, TCCD_inducible_PARP_like, zinc finger CCCH type, ubiquitin-mediated proteolysis 3 39 0.333 0.231 3
Explore		 0.333 0.231 2 1 0 0 0 3 0 2 0 1 0 0 0 0 0
? 75 27370917 cyclophilin, peptidyl-prolyl cis-trans isomerase-like 16 1229 6.500 0.208 16
Explore		 6.500 0.208 16 4 0 0 0 16 5 0 2 0 3 0 1 2 3
? 76 55666753 weak ubiquitin ligase RING-finger 5 131 0.667 0.191 5
Explore		 0.667 0.191 5 5 0 0 0 5 4 1 0 0 0 0 0 0 0
? 77 467687 cellulase, endoglucanase B, 1,4-beta-D-glucan-4-glucanohydrolase 5 134 0.250 0.187 5
Explore		 0.250 0.187 5 0 0 0 0 5 0 0 0 0 0 0 5 0 0
? 78 27262649 ataxin 2 related protein isoform C 4 97 0.250 0.165 4
Explore		 0.250 0.165 4 0 0 0 0 4 4 0 0 0 0 0 0 0 0
? 79 50918253 Ubiquitin-conjugating enzyme E2 5 158 0.250 0.158 5
Explore		 0.250 0.158 5 5 0 0 0 5 0 0 0 0 0 0 0 5 0
? 80 46098945 RING fingers 4 111 0.333 0.144 4
Explore		 0.333 0.144 4 3 0 0 0 4 0 0 0 0 0 0 4 0 0
? 81 13560797 ubiquitin-specific protease USP32 11 876 2.333 0.138 11
Explore		 2.333 0.138 11 1 0 0 0 11 6 1 0 1 3 0 0 0 0
? 82 50759663 WD40 beta propellers and TPR repeats 9 641 2.917 0.126 9
Explore		 2.917 0.126 9 1 0 0 0 9 4 1 0 1 0 1 2 0 0
? 83 50947153 glutathione transporter, isp4 protein 4 132 0.167 0.121 4
Explore		 0.167 0.121 3 1 0 0 0 4 0 0 0 0 0 0 0 4 0
? 84 18490973 P4Hc, Prolyl 4-hydroxylase alpha subunit homologues 3 75 0.333 0.120 3
Explore		 0.333 0.120 3 0 0 0 0 3 2 0 0 1 0 0 0 0 0
? 85 32766243 TPR repeats, similar to Pins 4 137 0.250 0.117 4
Explore		 0.250 0.117 4 2 0 0 0 4 4 0 0 0 0 0 0 0 0
? 86 34873258 ubiquitin-specific protease USP32 3 110 0.167 0.082 3
Explore		 0.167 0.082 3 0 0 0 0 3 3 0 0 0 0 0 0 0 0
? 87 12746256 follicle-stimulating hormone beta subunit, gonadotropin I beta subunit 5 332 0.333 0.075 5
Explore		 0.333 0.075 5 0 0 0 0 5 0 0 0 5 0 0 0 0 0
? 88 19070525 fibroblast growth factor 14 5 347 0.167 0.072 5
Explore		 0.167 0.072 5 0 0 0 0 5 5 0 0 0 0 0 0 0 0
? 89 50254472 MOZ_SAS, suggested to be homologous to acetyltransferases 3 162 0.250 0.056 3
Explore		 0.250 0.056 3 3 0 0 0 3 0 0 0 0 0 0 3 0 0
? 90 46981900 transferrin 4 306 0.667 0.052 4
Explore		 0.667 0.052 4 0 0 0 0 4 0 0 0 1 3 0 0 0 0
? 91 7499499 predicted CDS, LIM domain 3 195 0.167 0.046 3
Explore		 0.167 0.046 3 0 0 0 0 3 0 0 0 0 0 3 0 0 0
? 92 38104007 N-terminal F-box, large, low complexity 4 347 0.333 0.046 4
Explore		 0.333 0.046 4 4 0 0 0 4 0 0 0 0 0 0 4 0 0
? 93 55239395 OATP Organic Anion Transporter Polypeptide, KAZAL serine protease inhibitors 3 230 0.500 0.039 3
Explore		 0.500 0.039 3 1 0 0 0 3 0 0 0 1 2 0 0 0 0
? 94 11127982 beta 3 adrenergic receptor, beta3-adrenoceptor 7 1399 0.250 0.035 7
Explore		 0.250 0.035 7 0 0 0 0 7 7 0 0 0 0 0 0 0 0
? 95 11691912 2-5A oligoadenylate synthetase A 5 724 0.333 0.035 5
Explore		 0.333 0.035 5 0 0 0 0 5 0 4 0 0 0 0 0 0 1
? 96 13992528 peroxidase2, secretory peroxidase 5 732 0.250 0.034 5
Explore		 0.250 0.034 5 3 0 0 0 5 0 0 0 0 0 0 0 5 0
? 97 21711689 COG1112, similar to DNA2-like homolog: DNA replication helicase-like homolog 4 509 0.333 0.031 4
Explore		 0.333 0.031 2 2 0 0 0 4 0 2 0 0 2 0 0 0 0
? 98 55728491 FH2 domain-fragment 3 309 0.167 0.029 3
Explore		 0.167 0.029 3 0 0 0 0 3 3 0 0 0 0 0 0 0 0
? 99 45708873 connexin 30-32, gap junction protein 3 349 0.167 0.026 3
Explore		 0.167 0.026 3 0 0 0 0 3 0 0 3 0 0 0 0 0 0
? 100 42476262 similar to Aldehyde dehydrogenases 8 2695 2.333 0.024 6
Explore		 1.667 0.013 3 6 0 0 0 6 2 1 1 2 0 0 0 0 0
? 101 45597263 killer cell lectin-like receptor 3 404 0.167 0.022 3
Explore		 0.167 0.022 3 0 0 0 0 3 3 0 0 0 0 0 0 0 0
? 102 5042418 putative nucleoid DNA-binding protein cnd41, chloroplast nucleoid DNA binding protein-like; nucellin-like protein 3 466 0.167 0.019 3
Explore		 0.167 0.019 3 0 0 0 0 3 0 0 0 0 0 0 0 3 0
? 103 8979728 WD40 beta propellers 6 1951 1.000 0.018 6
Explore		 1.000 0.018 6 4 0 0 0 6 0 0 0 0 0 3 1 2 0
? 104 51095063 similar to matrilin 2 precursor, Thrombomodulin: C-Loop Fourth Egf-Like Domain, KU 5 1706 0.500 0.015 5
Explore		 0.500 0.015 5 0 0 0 0 5 4 0 0 1 0 0 0 0 0
? 105 19065 nitrate reductase NADPH 4 1163 0.333 0.014 4
Explore		 0.333 0.014 4 2 0 0 0 4 0 0 0 0 0 0 0 4 0
? 106 22265914 unknown, similar to Apolipoprotein 3 656 0.167 0.014 3
Explore		 0.167 0.014 3 3 0 0 0 3 0 0 0 0 0 3 0 0 0
? 107 6969639 Calmodulin-related 6 2745 0.833 0.013 5
Explore		 0.667 0.009 5 3 0 0 0 5 1 0 0 0 0 0 0 4 0
? 108 33239280 7TM olfactory receptor 9 6395 0.500 0.013 9
Explore		 0.500 0.013 9 0 0 0 0 9 8 1 0 0 0 0 0 0 0
? 109 21536248 glutathione S-transferase, theta 3 3 757 0.167 0.012 3
Explore		 0.167 0.012 3 0 0 0 0 3 3 0 0 0 0 0 0 0 0
? 110 28827162 melanin-concentrating hormone receptor 2, C-C chemokine receptor-3, G protein-coupled receptor 109B 5 4111 0.667 0.006 5
Explore		 0.667 0.006 5 2 0 0 0 5 4 0 0 1 0 0 0 0 0
? 111 50927341 KRAB krueppel-associated box and zinc finger proteins 7 8255 0.667 0.006 7
Explore		 0.667 0.006 7 0 0 0 0 7 6 0 0 0 0 1 0 0 0
? 112 50878309 cytochrome P450, coumarin 7-hydroxylase 4 4539 0.667 0.004 4
Explore		 0.667 0.004 4 0 0 0 0 4 2 0 0 0 0 0 0 2 0
? 113 24620175 MHC class I antigen, swine leucocyte antigen 3/2; SLA-3/2, MHC class I heavy chain precursor 4 6590 0.667 0.002 4
Explore		 0.667 0.002 4 1 0 0 0 4 2 0 0 2 0 0 0 0 0
? 114 20150502 trypsin-like protease, LDLa 3 3742 0.500 0.002 3
Explore		 0.500 0.002 3 0 0 0 0 3 0 1 0 1 1 0 0 0 0

Your query selected 979 sequences in 114 clusters.