HumanPRENbase
Database of Prenylated Human
Proteins and their Orthologues
Protein CaaX Farnesylation, CaaX Geranylgeranylation and Rab Geranylgeranylation

CLUSTER parameter selection REQUIRE one of the features for at least one member of listed clusters: Status-KNOWN Status-LIKELY Status-NEW Mammalia Plants EXCLUDE clusters with the following features for at least one member: Status-OUT-OF-CONTEXT Other features for cluster members are ALLOWED. Minimum cluster-size: 1

SEQUENCE parameter selection INCLUDE entries with the following features: FT-substrate(s) Viruses Mammalia Aves Amphibia Fishes Insecta Nematoda Fungi Plants Other-Eukaryota EXCLUDE entries with the following features: GGT1-substrate(s) GGT2-substrate(s) Synthetic-constructs

Ranked by evOluation of cluster after selection

Querycode: Hcs2220ce111ct11112111111211cm1se200st00202222222221r3 (save for easy recovery of the identical query parameters)

Clusters							Selected Sequences
General Information				Stats				Stats			Enzyme			Taxonomic Kingdom			Taxonomic Detail Eukaryota
Status	Rank	ClustID	Name	Pren	Total	PC	EvO	Number	PC	EvO	FT	GGT1	GGT2	Viruses	Synthetic	Eukaryota	Mammalia	Birds	Amphibia	Fishes	Insecta	Nematoda	Fungi	Plants	Other
+	1	21327708 (no isoinpas)	nucleosome assembly protein 1-like 1	25	41	11.500	15.244	25 Explore	11.500	15.244	25	0	0	0	0	25	3	1	2	1	0	0	11	7	0
+	2	28200377 (3 isoinpas)	DnaJA2 - DnaJ/Hsp40 homolog, subfamily A, member 2	14	24	8.167	8.167	13 Explore	7.583	7.042	13	0	0	0	0	13	2	1	2	1	0	2	0	1	4
?	3	41018470 (3 isoinpas)	WD and tetratricopeptide repeats protein 1	7	15	3.000	3.267	7 Explore	3.000	3.267	7	0	0	0	0	7	2	1	0	1	0	1	1	1	0
?	4	458692 (3 isoinpas)	WD repeat domain 42A	7	16	1.500	3.062	6 Explore	1.250	2.250	6	0	0	0	0	6	4	0	1	0	0	0	0	1	0

Your query selected 51 sequences in 4 clusters.