ID chromosome_3 standard; DNA; FUN; 2452883 BP. XX AC chromosome_3; XX XX FH Key Location/Qualifiers FH FT rRNA complement(1..2852) FT /product="18S, 5.8S, and 28S ribosomal RNA" FT /systematic_id="SPRRNA.21" FT /gene="SPRRNA.21" FT /GO="aspect=F; term=structural constituent of ribosome ; FT GOid=GO:0003735; evidence=RCA; db_xref=PMID:17072883; FT date=20070705" FT /GO="aspect=C; term=cytosolic ribosome (sensu Eukaryota); FT GOid=GO:0022626; evidence=RCA; db_xref=PMID:17072883; FT date=20070705" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=RCA; db_xref=PMID:17072883; date=20070705" FT rRNA complement(5542..13722) FT /product="18S, 5.8S, and 28S ribosomal RNA" FT /systematic_id="SPRRNA.22" FT /GO="aspect=F; term=structural constituent of ribosome ; FT GOid=GO:0003735; evidence=RCA; db_xref=PMID:17072883; FT date=20070705" FT /GO="aspect=C; term=cytosolic ribosome (sensu Eukaryota); FT GOid=GO:0022626; evidence=RCA; db_xref=PMID:17072883; FT date=20070705" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=RCA; db_xref=PMID:17072883; date=20070705" FT rRNA complement(16412..24810) FT /product="18S, 5.8S, and 28S ribosomal RNA" FT /systematic_id="SPRRNA.23" FT /GO="aspect=F; term=structural constituent of ribosome ; FT GOid=GO:0003735; evidence=RCA; db_xref=PMID:17072883; FT date=20070705" FT /GO="aspect=C; term=cytosolic ribosome (sensu Eukaryota); FT GOid=GO:0022626; evidence=RCA; db_xref=PMID:17072883; FT date=20070705" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=RCA; db_xref=PMID:17072883; date=20070705" FT LTR complement(26343..26675) FT /note="216 (-1) 10 349 Tf2-type LTR" FT CDS complement(28680..29423) FT /colour=12 FT /fasta_file="fasta/p20C8.tab.seq.05389.out" FT /product="B13958 domain" FT /systematic_id="SPCP20C8.01c" FT /gene="SPCP20C8.01c" FT /controlled_curation="term=repeat containing; FT date=19700101" FT /controlled_curation="term=possibly S. pombe specific; FT date=19700101" FT /controlled_curation="term=S. pombe specific family; FT date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT misc_RNA 29535..29898 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /systematic_id="SPNCRNA.449" FT /note="WARNING:this transcript could be on either strand" FT /synonym="SPNG2016" FT /product="non-coding RNA (predicted)" FT CDS complement(31185..31520) FT /colour=12 FT /fasta_file="fasta/p20C8.tab.seq.05390.out" FT /product="S. pombe specific UPF0321 family protein 1" FT /systematic_id="SPCP20C8.02c" FT /note="possibly not coding, may be a spurious ORF" FT /gene="SPCP20C8.02c" FT /controlled_curation="term=UPF0321 family; date=19700101" FT /controlled_curation="term=possibly S. pombe specific; FT date=19700101" FT /controlled_curation="term=telomeric duplication; FT date=19700101" FT /controlled_curation="term=similar to S. pombe FT SPAPJ695.01c and SPCC569.02c; date=20071122" FT /controlled_curation="term=predicted N- terminal signal FT sequence; date=20071122" FT /controlled_curation="term=S. pombe specific family; FT date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT LTR complement(31728..31925) FT /note="446 (-1) 144 349 Tf2-type LTR" FT CDS 32624..33393 FT /colour=13 FT /controlled_curation="term=repeat containing; FT date=19700101" FT /controlled_curation="term=duplicated in S. pombe; FT date=19700101" FT /fasta_file="fasta/p20C8.tab.seq.05391.out" FT /fasta_file="fasta/c1884.tab.seq.04999.out" FT /gene="SPCP20C8.03" FT /note="1 frameshift" FT /product="pseudogene (predicted)" FT /pseudo FT /systematic_id="SPCP20C8.03" FT misc_feature 33134..33274 FT /note="nominal overlap with SPCC1884 S. pombe chromosome FT 3" FT repeat_region 33134..36059 FT /note="duplicated region" FT repeat_region 36398..36755 FT /note="duplicated region in c26F1" FT repeat_region 36559..36627 FT /note="duplicated in c26F1" FT CDS join(36972..36985,37169..37724,37872..38142,38193..38788) FT /colour=13 FT /fasta_file="fasta/c1884.tab.seq.05000.out" FT /gene="SPCC1884.01" FT /note="2 non-consensus branch and acceptors" FT /product="pseudogene (predicted)" FT /pseudo FT /systematic_id="SPCC1884.01" FT misc_feature 36986..36991 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 37138..37168 FT /colour=6 FT /note="ctgatttttgcatttttggcactgaaaccag, splice branch and FT a cceptor" FT misc_feature 37725..37730 FT /colour=6 FT /note="gtgatt, splice donor sequence" FT misc_feature 37851..37871 FT /colour=6 FT /note="no branch consensus- putative pseudogene" FT misc_feature 38143..38148 FT /colour=6 FT /note="gtattc, splice donor sequence" FT misc_feature 38173..38192 FT /colour=6 FT /note="no branch consensus- putative pseudogene" FT misc_RNA complement(41985..42728) FT /controlled_curation="term=non-coding RNA; FT qualifier=predicted; db_xref=PMID:12597277; date=20050412" FT /controlled_curation="term=poly(A)-bearing RNA; FT qualifier=predicted; db_xref=PMID:12597277; date=20050412" FT /controlled_curation="term=no detectable long open reading FT frame; qualifier=predicted; db_xref=PMID:12597277; FT date=20050412" FT /controlled_curation="term=meiotic expression upregulated; FT qualifier=predicted; db_xref=EMBL:AB084819; date=20050412" FT /db_xref="PMID:12597277" FT /db_xref="EMBL:AB084819" FT /gene="meu3" FT /gene="prl07" FT /gene="prl7" FT /gene="SPNCRNA.07" FT /note="meu3 RNA" FT /primary_name="meu3" FT /product="non-coding RNA (predicted)" FT /synonym="prl07" FT /synonym="prl7" FT /systematic_id="SPNCRNA.07" FT LTR 43111..43459 FT /note="Tf2 type LTR" FT CDS 43854..45071 FT /GO="aspect=C; term=integral to plasma membrane; FT GOid=GO:0005887; evidence=TAS; db_xref=PMID:10748059; FT date=20060206" FT /GO="aspect=F; term=nickel ion transporter activity; FT GOid=GO:0015099; evidence=IMP; db_xref=PMID:10748059; FT date=20060206" FT /GO="aspect=P; term=nickel ion transport; GOid=GO:0015675; FT evidence=IMP; db_xref=PMID:10748059; date=20060206" FT /GO="aspect=P; term=regulation of urea catabolic process; FT qualifier=indirect; GOid=GO:0034254; evidence=IMP; FT db_xref=PMID:10748059; date=20060206" FT /colour=2 FT /controlled_curation="term=conserved family (bacterial FT fungal plant); date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /fasta_file="fasta/c1884.tab.seq.05001.out" FT /fasta_file="fasta/c757.tab.seq.00015.out" FT /primary_name="nic1" FT /product="NiCoT heavy metal ion transporter Nic1" FT /synonym="SPCC757.01" FT /systematic_id="SPCC1884.02" FT /gene="nic1" FT /gene="SPCC1884.02" FT /gene="SPCC757.01" FT misc_feature complement(44098..44597) FT /note="nominal overlap with cosmid SPCC1884, EM:AL031787 FT S. pombe chromosome 3" FT misc_feature 44098..44597 FT /note="nominal overlap with cosmid SPCC757, EM:AL031825 S. FT pombe chromosome 3" FT CDS complement(45695..46912) FT /colour=10 FT /controlled_curation="term=conserved protein (fungal and FT plant); date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /fasta_file="fasta/c757.tab.seq.00016.out" FT /product="epimarase (predicted)" FT /systematic_id="SPCC757.02c" FT /gene="SPCC757.02c" FT CDS complement(47741..48475) FT /GO="aspect=P; term=response to oxidative stress; FT GOid=GO:0006979; evidence=IEP; db_xref=PMID:12529438; FT date=20070402" FT /colour=10 FT /fasta_file="fasta/c757.tab.seq.00003.out" FT /product="ThiJ domain protein" FT /systematic_id="SPCC757.03c" FT /gene="SPCC757.03c" FT /controlled_curation="term=conserved family; FT date=19700101" FT /controlled_curation="term=similar to S. pombe SPBC947.09 FT and SPAC11D3.13 and SPAC5H10.02C and SPAC1F7.06; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YDR533C and YPL280W and YOR391C and YMR322C; FT date=19700101" FT misc_RNA 49076..49156 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /controlled_curation="term=uncertain; date=20071010" FT /systematic_id="SPNCRNA.450" FT /note="WARNING:this transcript could be on either strand" FT /synonym="SPNG2021" FT /product="non-coding RNA (predicted)" FT LTR 49206..49550 FT /note="tf2-type LTR" FT misc_RNA 49802..50142 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /systematic_id="SPNCRNA.451" FT /note="WARNING:this transcript could be on either strand" FT /synonym="SPNG2023" FT /product="non-coding RNA (predicted)" FT CDS join(50358..50552,50678..52537) FT /GO="aspect=F; term=transcription factor activity; FT GOid=GO:0003700; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00172; date=20050616" FT /GO="aspect=P; term=regulation of transcription, FT DNA-dependent; GOid=GO:0006355; evidence=ISS; FT db_xref=PMID:17072883; with=Pfam:PF00172; date=20050616" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00172; FT date=20050616" FT /GO="aspect=F; term=zinc ion binding; GOid=GO:0008270; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00172; FT date=20050616" FT /GO="aspect=F; term=DNA binding; GOid=GO:0003677; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00172; FT date=20050616" FT /colour=7 FT /fasta_file="fasta/c757.tab.seq.00002.out" FT /product="transcription factor (predicted)" FT /systematic_id="SPCC757.04" FT /gene="SPCC757.04" FT /controlled_curation="term=conserved fungal family; FT date=20070309" FT /controlled_curation="term=zinc finger protein; FT date=19700101" FT /controlled_curation="term=zf-fungal Zn(2)-Cys(6) FT binuclear cluster domain; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YOR337W and YLR098C; date=19700101" FT /controlled_curation="term=similar to S. pombe SPCC777.02 FT and SPBC1683.13; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_feature 50553..50558 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 50658..50677 FT /colour=6 FT /note="ctaatttaatcaatcgacag, splice branch and acceptor" FT CDS complement(52910..54112) FT /colour=10 FT /controlled_curation="term=peptidase family M20; FT date=19700101" FT /controlled_curation="term=conserved protein; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /fasta_file="fasta/c757.tab.seq.00004.out" FT /product="peptidase family M20 protein" FT /systematic_id="SPCC757.05c" FT /gene="SPCC757.05c" FT misc_RNA 54496..55150 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /systematic_id="SPNCRNA.452" FT /note="WARNING:this transcript could be on either strand" FT /synonym="SPNG2025" FT /product="non-coding RNA (predicted)" FT CDS join(55579..55608,55666..55779,55823..56029) FT /colour=6 FT /controlled_curation="term=dubious; date=19700101" FT /product="dubious" FT /systematic_id="SPCC757.06" FT /note="this is unlikely to be protein coding as neither FT intron is supported by transcriptome data" FT /gene="SPCC757.06" FT misc_feature 55609..55614 FT /colour=6 FT /note="gtgtgt, splice donor sequence" FT misc_feature 55651..55665 FT /colour=6 FT /note="ttgatatttttccag, splice branch and acceptor" FT misc_feature 55780..55785 FT /colour=6 FT /note="gttagt, splice donor sequence" FT misc_feature 55802..55822 FT /colour=6 FT /note="ttaatttcggcaaaatcaaag, splice branch and acceptor" FT 3'UTR complement(56779..56926) FT /db_xref="EMBL:D89126" FT /systematic_id="SPCC757.07c" FT /gene="ctt1" FT /gene="cta1" FT /gene="SPCC757.07c" FT CDS complement(56927..58465) FT /EC_number="1.11.1.6" FT /GO="aspect=F; term=catalase activity; GOid=GO:0004096; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002664; FT date=20050708" FT /GO="aspect=C; term=mitochondrion; GOid=GO:0005739; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002664; FT date=20050708" FT /GO="aspect=C; term=peroxisome; GOid=GO:0005777; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002664; FT date=20050708" FT /GO="aspect=P; term=response to oxidative stress; FT GOid=GO:0006979; evidence=IC; db_xref=PMID:17072883; FT from=GO:0004096; date=20050708" FT /colour=2 FT /fasta_file="fasta/c757.tab.seq.00021.out" FT /primary_name="ctt1" FT /product="catalase" FT /synonym="cta1" FT /systematic_id="SPCC757.07c" FT /gene="ctt1" FT /gene="cta1" FT /gene="SPCC757.07c" FT /controlled_curation="term=disease associated, acatalasia; FT date=20060725" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070115" FT /controlled_curation="term=similar to S. cerevisiae FT YDR256C and YGR088W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 5'UTR complement(58466..58525) FT /db_xref="EMBL:D89126" FT /systematic_id="SPCC757.07c" FT /gene="ctt1" FT /gene="cta1" FT /gene="SPCC757.07c" FT misc_RNA 59326..60703 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /systematic_id="SPNCRNA.453" FT /note="WARNING:this transcript could be on either strand" FT /note="This may be 2 seperate transcripts" FT /synonym="SPNG2030" FT /product="non-coding RNA (predicted)" FT CDS complement(join(60428..60490,60548..60694)) FT /db_xref="PMID:18488015" FT /fasta_file="%uniprot:fasta/transreads_101207_chr3.embl.seq.04281.out" FT /product="sequence orphan" FT /colour=8 FT /systematic_id="SPCC757.15" FT /gene="SPCC757.15" FT /controlled_curation="term=no apparent orthologs; FT date=20080102" FT /controlled_curation="term=sequence orphan; date=20080102" FT /controlled_curation="term=new protein coding gene from FT Solexa data; db_xref=PMID:18488015; date=20080513" FT /controlled_curation="term=sequence orphan, FT uncharacterised; date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT intron complement(60704..60773) FT /colour=7 FT /note="Intron predicted by HMM_intron, Score=16.24" FT CDS join(62999..63162,63217..63336,63436..64027) FT /GO="aspect=P; term=rRNA processing; GOid=GO:0006364; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002688; FT date=20050629" FT /GO="aspect=C; term=cytoplasmic exosome (RNase complex); FT GOid=GO:0000177; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002688; date=20050629" FT /GO="aspect=C; term=nuclear exosome (RNase complex); FT GOid=GO:0000176; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002688; date=20050629" FT /GO="aspect=P; term=mRNA catabolism; GOid=GO:0006402; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002688; FT date=20050629" FT /GO="aspect=F; term=3'-5'-exoribonuclease activity; FT GOid=GO:0000175; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002688; date=20050629" FT /colour=7 FT /fasta_file="fasta/c757.tab.seq.00022.out" FT /product="exosome subunit Rrp45 (predicted)" FT /systematic_id="SPCC757.08" FT /gene="SPCC757.08" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070309" FT /controlled_curation="term=similar to S. cerevisiae FT YDR280W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 63163..63168 FT /colour=6 FT /note="gtatat, splice donor sequence" FT misc_feature 63201..63216 FT /colour=6 FT /note="ctaacaagtactgtag, splice branch and acceptor" FT misc_feature 63337..63342 FT /colour=6 FT /note="gtaaga, splice donor sequence" FT misc_feature 63423..63435 FT /colour=6 FT /note="ctaataatcacag, splice branch and acceptor" FT CDS complement(65489..66685) FT /GO="aspect=P; term=MAPKKK cascade; GOid=GO:0000165; FT evidence=IGI; db_xref=PMID:17072883; with=PMID:12931193; FT with=GeneDB_Spombe:SPBC1685.01; date=20050629" FT /GO="aspect=P; term=negative regulation of protein kinase FT activity; GOid=GO:0006469; evidence=IGI; FT db_xref=PMID:12931193; with=GeneDB_Spombe:SPBC1685.01; FT date=20050629" FT /GO="aspect=P; term=negative regulation of MAPKKK cascade; FT GOid=GO:0043409; evidence=IGI; db_xref=PMID:12931193; FT with=GeneDB_Spombe:SPBC1685.01; date=20050629" FT /GO="aspect=F; term=mRNA binding; GOid=GO:0003729; FT evidence=IPI; db_xref=PMID:12931193; FT with=GeneDB_Spombe:SPBC1685.01; date=20050629" FT /GO="aspect=P; term=mRNA stabilization; GOid=GO:0048255; FT evidence=IMP; db_xref=PMID:12931193; date=20050629" FT /GO="aspect=F; term=protein binding; FT qualifier=is_target_of; GOid=GO:0005515; evidence=IPI; FT db_xref=PMID:12931193; with=GeneDB_Spombe:SPBC119.08; FT date=20050629" FT /colour=2 FT /fasta_file="fasta/c757.tab.seq.00023.out" FT /primary_name="rnc1" FT /product="RNA-binding protein that suppresses calcineurin FT deletion Rnc1" FT /systematic_id="SPCC757.09c" FT /gene="rnc1" FT /gene="SPCC757.09c" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070309" FT /controlled_curation="term=KH domain; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YBR233W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT CDS join(68612..68953,69017..69235) FT /GO="aspect=C; term=endoplasmic reticulum membrane; FT GOid=GO:0005789; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001602; date=20050629" FT /GO="aspect=P; term=cellular protein complex assembly; FT GOid=GO:0043461; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001602; date=20050629" FT /GO="aspect=P; term=vacuolar acidification; FT GOid=GO:0007035; evidence=ISS; db_xref=GOC:unpublished; FT with=SGD:S000001602; date=20071112" FT /colour=7 FT /fasta_file="fasta/c757.tab.seq.00024.out" FT /primary_name="vph2" FT /product="endoplasmic reticulum membrane involved in FT assembly of the V-ATPase" FT /systematic_id="SPCC757.10" FT /gene="vph2" FT /gene="SPCC757.10" FT /controlled_curation="term=conserved fungal protein; FT date=20070309" FT /controlled_curation="term=similar to S. cerevisiae FT YKL119C; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_feature 68954..68959 FT /colour=6 FT /note="gtatga, splice donor sequence" FT misc_feature 68998..69016 FT /colour=6 FT /note="ttgacttaatattatttag, splice branch and acceptor" FT CDS complement(69641..71056) FT /colour=7 FT /controlled_curation="term=conserved protein (fungal and FT plant); date=20070427" FT /controlled_curation="term=membrane transporter; FT date=19700101" FT /controlled_curation="term=12 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=orthologs cannot be FT distinguished; date=19700101" FT /controlled_curation="term=similar to S. pombe SPCC613.02 FT and SPCC613.01 and SPCC330.07c; date=19700101" FT /fasta_file="fasta/c757.tab.seq.00025.out" FT /product="membrane transporter" FT /systematic_id="SPCC757.11c" FT /GO="aspect=F; term=transmembrane transporter activity; FT GOid=GO:0022857; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF07690; date=20070821" FT /GO="aspect=P; term=transport; GOid=GO:0006810; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF07690; FT date=20070821" FT /gene="SPCC757.11c" FT tRNA 71400..71471 FT /gene="SPCTRNAHIS.03" FT /note="tRNA His anticodon GTG" FT /product="tRNA Histidine" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=RCA; db_xref=PMID:17072883; date=20070711" FT /GO="aspect=P; term=translational elongation; FT GOid=GO:0006414; evidence=RCA; db_xref=PMID:17072883; FT date=20070711" FT /GO="aspect=F; term=GTG codon-amino acid adaptor activity; FT GOid=GO:0033452; evidence=RCA; db_xref=PMID:17072883; FT date=20070711" FT /systematic_id="SPCTRNAHIS.03" FT CDS 73483..75360 FT /EC_number="3.2.1.1" FT /GO="aspect=C; term=cell surface; GOid=GO:0009986; FT evidence=IC; db_xref=PMID:17072883; from=GO:0004556; FT date=20050427" FT /GO="aspect=C; term=cell wall; qualifier=colocalizes_with; FT GOid=GO:0005618; evidence=ISS; db_xref=PMID:17072883; FT with=GeneDB_Spombe:SPCC63.02c; date=20060611" FT /GO="aspect=C; term=external side of plasma membrane; FT GOid=GO:0009897; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00128; date=20050418" FT /GO="aspect=F; term=alpha-amylase activity; FT GOid=GO:0004556; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00128; date=20050427" FT /GO="aspect=P; term=cell morphogenesis; GOid=GO:0000902; FT evidence=ISS; db_xref=PMID:17072883; FT with=GeneDB_Spombe:SPCC63.02c; date=20060611" FT /GO="aspect=P; term=cell wall biosynthesis (sensu Fungi); FT GOid=GO:0009272; evidence=ISS; db_xref=PMID:17072883; FT with=GeneDB_Spombe:SPCC63.02c; date=20060611" FT /GO="aspect=P; term=cellular polysaccharide catabolism; FT GOid=GO:0044247; evidence=IC; db_xref=PMID:17072883; FT from=GO:0004556; date=20050427" FT /colour=7 FT /controlled_curation="term=glycoprotein; cv=pt_mod; FT date=20060611" FT /controlled_curation="term=N-glycosylated; evidence=IDA; FT cv=pt_mod; date=20060611" FT /controlled_curation="term=N-glycosylation site; FT cv=pt_mod; date=20060611" FT /controlled_curation="term=glycosyl hydrolase family 13; FT date=20060611" FT /controlled_curation="term=predicted N-terminal signal FT sequence; date=20060611" FT /controlled_curation="term=GPI anchored protein; FT evidence=ISS; db_xref=PMID:12845604; date=20060611" FT /controlled_curation="term=conserved family; FT date=20070506" FT /controlled_curation="term=orthologs cannot be FT distinguished; date=19700101" FT /fasta_file="fasta/c757.tab.seq.00026.out" FT /product="alpha-amylase homolog (predicted)" FT /systematic_id="SPCC757.12" FT /gene="SPCC757.12" FT misc_RNA 76513..77990 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /systematic_id="SPNCRNA.454" FT /note="WARNING:this transcript could be on either strand" FT /synonym="SPNG2036" FT /product="non-coding RNA (predicted)" FT CDS 78044..79612 FT /colour=7 FT /fasta_file="fasta/c757.tab.seq.00030.out" FT /product="membrane transporter (predicted)" FT /systematic_id="SPCC757.13" FT /GO="aspect=F; term=transmembrane transporter activity; FT GOid=GO:0022857; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF07690; date=20070827" FT /GO="aspect=P; term=transport; GOid=GO:0006810; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF07690; FT date=20070827" FT /gene="SPCC757.13" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070309" FT /controlled_curation="term=allantoate permease family; FT date=19700101" FT /controlled_curation="term=similar to S. pombe SPCC417.10 FT and SPBC1773.15; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YJR152W and YLR004C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature complement(79801..81325) FT /note="nominal overlap with cosmid SPCC757 and cosmid FT SPCC613" FT CDS 80547..82040 FT /GO="aspect=C; term=integral to membrane; GOid=GO:0016021; FT evidence=ISS; db_xref=PMID:17072883; with=CBS:TMHMM; FT date=20060503" FT /GO="aspect=F; term=transmembrane transporter activity; FT GOid=GO:0022857; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF07690; date=20070111" FT /GO="aspect=P; term=transport; GOid=GO:0006810; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF0769; FT date=20070111" FT /colour=7 FT /controlled_curation="term=conserved family; FT date=20070427" FT /controlled_curation="term=membrane transporter; FT date=19700101" FT /controlled_curation="term=similar to S. pombe SPCC613.02 FT and SPCC330.07c and SPCC757.11c (paralogs); date=19700101" FT /controlled_curation="term=orthologs cannot be FT distinguished; date=19700101" FT /fasta_file="fasta/c757.tab.seq.00028.out" FT /fasta_file="fasta/c613.tab.seq.00032.out" FT /product="membrane transporter" FT /synonym="SPCC757.14" FT /systematic_id="SPCC613.01" FT /gene="SPCC757.14" FT /gene="SPCC613.01" FT CDS 82860..84353 FT /GO="aspect=C; term=integral to membrane; GOid=GO:0016021; FT evidence=ISS; db_xref=PMID:17072883; with=CBS:TMHMM; FT date=20060503" FT /GO="aspect=F; term=transmembrane transporter activity; FT GOid=GO:0022857; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF07690; date=20070111" FT /GO="aspect=P; term=transport; GOid=GO:0006810; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF0769; FT date=20070111" FT /colour=7 FT /controlled_curation="term=conserved family; FT date=20070427" FT /controlled_curation="term=membrane transporter; FT date=19700101" FT /controlled_curation="term=similar to S. pombe SPCC613.01 FT and SPCC330.07c and SPCC757.11c (paralogs); date=19700101" FT /controlled_curation="term=orthologs cannot be FT distinguished; date=19700101" FT /fasta_file="fasta/c613.tab.seq.00033.out" FT /product="membrane transporter" FT /systematic_id="SPCC613.02" FT /gene="SPCC613.02" FT misc_RNA complement(84683..85096) FT /controlled_curation="term=non-coding RNA; FT qualifier=predicted; db_xref=PMID:12597277; date=20050412" FT /controlled_curation="term=poly(A)-bearing RNA; FT qualifier=predicted; db_xref=PMID:12597277; date=20050412" FT /controlled_curation="term=no detectable long open reading FT frame; qualifier=predicted; db_xref=PMID:12597277; FT date=20050412" FT /db_xref="PMID:12597277" FT /db_xref="EMBL:AB084834" FT /gene="prl22" FT /gene="SPNCRNA.22" FT /primary_name="prl22" FT /product="non-coding RNA (predicted)" FT /systematic_id="SPNCRNA.22" FT CDS 85363..85932 FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000004240; FT date=20050310" FT /colour=10 FT /fasta_file="fasta/c613.tab.seq.00034.out" FT /product="conserved fungal protein" FT /systematic_id="SPCC613.03" FT /gene="SPCC613.03" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=EF hand; date=19700101" FT /controlled_curation="term=predicted N-terminal signal FT sequence; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YLR250W; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT CDS complement(86370..88610) FT /GO="aspect=C; term=actin cytoskeleton; GOid=GO:0015629; FT evidence=TAS; db_xref=PMID:10852821; date=20040917" FT /GO="aspect=C; term=contractile ring; FT qualifier=colocalizes_with; GOid=GO:0005826; evidence=IDA; FT db_xref=PMID:10852821; date=20050121" FT /GO="aspect=F; term=myosin binding; GOid=GO:0017022; FT evidence=ISS; db_xref=PMID:12725728; with=SGD:S000005561; FT date=20040917" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:15504913; FT with=GeneDB_Spombe:SPCC645.05c; date=20040917" FT /GO="aspect=P; term=cytokinesis, contractile ring FT formation; qualifier=required; GOid=GO:0000915; FT evidence=IMP; db_xref=PMID:10852821; date=20040917" FT /GO="aspect=P; term=protein localization; FT qualifier=localization_dependency; GOid=GO:0008104; FT evidence=IGI; db_xref=PMID:10852821; FT with=GeneDB_Spombe:SPCC645.05c; date=20050711" FT /colour=2 FT /fasta_file="fasta/c613.tab.seq.00035.out" FT /primary_name="rng3" FT /product="UCS-domain protein (PMID 10852821)" FT /systematic_id="SPCC613.04c" FT /gene="rng3" FT /gene="SPCC613.04c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070309" FT /controlled_curation="term=similar to S. cerevisiae FT YOR035C; date=19700101" FT /controlled_curation="term=armadillo repeat protein; FT qualifier=inferred from context; date=19700101" FT /controlled_curation="term=TPR repeat protein; FT qualifier=inferred from context; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(join(88905..89136,89421..89557)) FT /GO="aspect=C; term=cytosolic large ribosomal subunit FT (sensu Eukaryota); GOid=GO:0022625; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000002350; date=20061026" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002350; FT date=20061026" FT /GO="aspect=F; term=structural constituent of ribosome; FT GOid=GO:0003735; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002350; date=20061026" FT /colour=2 FT /fasta_file="fasta/c613.tab.seq.00036.out" FT /primary_name="rpl35" FT /product="60S ribosomal protein L35" FT /systematic_id="SPCC613.05c" FT /gene="rpl35" FT /gene="SPCC613.05c" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070309" FT /controlled_curation="term=similar to S. cerevisiae FT YDL191W and YDL136W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(89137..89151) FT /colour=6 FT /note="ctaacttatttatag, splice branch and acceptor" FT intron complement(89137..89420) FT /colour=2 FT /note="confirmed intron" FT /gene="rpl35" FT /gene="SPCC613.05c" FT misc_feature complement(89415..89420) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT CDS 89780..90349 FT /GO="aspect=C; term=cytosolic large ribosomal subunit FT (sensu Eukaryota); GOid=GO:0022625; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000003115; date=20061026" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000003115; FT date=20061026" FT /GO="aspect=F; term=structural constituent of ribosome; FT GOid=GO:0003735; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000003115; date=20061026" FT /colour=2 FT /fasta_file="fasta/c613.tab.seq.00037.out" FT /primary_name="rpl902" FT /product="60S ribosomal protein L9" FT /synonym="rpl9-2" FT /systematic_id="SPCC613.06" FT /gene="rpl902" FT /gene="rpl9-2" FT /gene="SPCC613.06" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070309" FT /controlled_curation="term=similar to S. cerevisiae FT YGL147C and YNL067W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS 91686..92723 FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001082; FT date=20050413" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001082; FT date=20050413" FT /GO="aspect=P; term=snoRNA metabolism; GOid=GO:0016074; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001082; FT date=20050413" FT /colour=7 FT /fasta_file="fasta/c613.tab.seq.00038.out" FT /product="snoRNA biogenesis protein" FT /systematic_id="SPCC613.07" FT /gene="SPCC613.07" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070309" FT /controlled_curation="term=zinc finger protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YHR040W; date=19700101" FT /controlled_curation="term=zf-HIT; date=20080502" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS join(93017..93230,93285..93496,93618..94169) FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002769; FT date=20061115" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002769; FT date=20061115" FT /GO="aspect=P; term=protein export from nucleus; FT GOid=GO:0006611; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002769; date=20061113" FT /GO="aspect=P; term=ribosomal large subunit export from FT nucleus; GOid=GO:0000055; evidence=ISS; FT db_xref=GOC:unpublished; with=SGD:S000002769; FT date=20080201" FT /colour=7 FT /fasta_file="fasta/c613.tab.seq.00039.out" FT /product="CDK regulator, involved in ribosome export FT (predicted)" FT /systematic_id="SPCC613.08" FT /gene="SPCC613.08" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=similar to human tok1 a FT p21Cip1-binding protein that cooperatively enhances FT p21-dependent inhibitory activity toward CDK2 kinase; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YDR361C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 93231..93236 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 93268..93284 FT /colour=6 FT /note="ttaactttttatattag, splice branch and acceptor" FT misc_feature 93497..93502 FT /colour=6 FT /note="gtatga, splice donor sequence" FT misc_feature 93601..93617 FT /colour=6 FT /note="ctaacggtacttattag, splice branch and acceptor" FT CDS join(94731..94831,94909..95046,95116..96031) FT /GO="aspect=C; term=mitochondrial outer membrane; FT GOid=GO:0005741; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000006004; date=20040914" FT /GO="aspect=C; term=tRNA-intron endonuclease complex; FT GOid=GO:0000214; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000006004; date=20030913" FT /GO="aspect=F; term=tRNA-intron endonuclease activity; FT qualifier=contributes_to; GOid=GO:0000213; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000006004; date=20030913" FT /GO="aspect=P; term=tRNA-type intron splice site FT recognition and cleavage; GOid=GO:0000379; evidence=ISS; FT db_xref=GOC:unpublished; with=SGD:S000006004; FT date=20080827" FT /colour=7 FT /fasta_file="fasta/c613.tab.seq.00040.out" FT /primary_name="sen54" FT /product="tRNA-splicing endonuclease subunit Sen54 FT (predicted)" FT /systematic_id="SPCC613.09" FT /gene="sen54" FT /gene="SPCC613.09" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070309" FT /controlled_curation="term=similar to S. cerevisiae FT YPL083C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 94832..94837 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 94888..94908 FT /colour=6 FT /note="ctaatttcattaaaataacag, splice branch and acceptor" FT misc_feature 95047..95052 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 95096..95115 FT /colour=6 FT /note="ctaacgtggatggcatttag, splice branch and acceptor" FT CDS 96721..98001 FT /EC_number="1.10.2.2" FT /GO="aspect=P; term=mitochondrial electron transport, FT ubiquinol to cytochrome c; GOid=GO:0006122; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P07257; date=20040505" FT /GO="aspect=F; term=structural molecule activity; FT GOid=GO:0005198; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P07257; date=20040505" FT /GO="aspect=C; term=respiratory chain complex III (sensu FT Eukaryota); GOid=GO:0005750; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P07257; date=20040625" FT /GO="aspect=F; term=ubiquinol-cytochrome-c reductase FT activity; qualifier=contributes_to; GOid=GO:0008121; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P07257; FT date=20040625" FT /colour=7 FT /fasta_file="fasta/c613.tab.seq.00046.out" FT /primary_name="qcr2" FT /product="ubiquinol-cytochrome-c reductase complex core FT protein Qcr2" FT /systematic_id="SPCC613.10" FT /gene="qcr2" FT /gene="SPCC613.10" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070309" FT /controlled_curation="term=peptidase family M16; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YPR191W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 3'UTR 98002..98210 FT /note="mRNA from AU007223" FT /gene="qcr2" FT /gene="SPCC613.10" FT 3'UTR complement(98575..98720) FT /note="mRNA from AB054307" FT /gene="meu23" FT /gene="B13958-2" FT /gene="SPCC613.11c" FT CDS complement(98721..99485) FT /colour=10 FT /fasta_file="fasta/c613.tab.seq.00042.out" FT /note="repeat consensus MQGTMNT 3/4 copies" FT /primary_name="meu23" FT /product="DUF1773 family protein 2" FT /synonym="B13958-2" FT /systematic_id="SPCC613.11c" FT /gene="meu23" FT /gene="B13958-2" FT /gene="SPCC613.11c" FT /controlled_curation="term=conserved fungal family; FT date=19700101" FT /controlled_curation="term=DUF1773; date=19700101" FT /controlled_curation="term=meiotic expression upregulated; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=repeat containing; FT date=19700101" FT /controlled_curation="term=coiled-coil; FT qualifier=predicted|region; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT CDS complement(100255..102171) FT /GO="aspect=C; term=Rik1-E3 ubiquitin ligase complex; FT GOid=GO:0043494; evidence=IDA; db_xref=PMID:16024659; FT date=20050901" FT /GO="aspect=C; term=mating-type region heterochromatin; FT GOid=GO:0031934; evidence=TAS; db_xref=PMID:16157682; FT date=20050920" FT /GO="aspect=C; term=nucleus; qualifier=predominantly; FT GOid=GO:0005634; evidence=IDA; db_xref=PMID:16040243; FT date=20050901" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:16040243; FT with=GeneDB_Spombe:SPCC11E10.08; date=20050901" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:16157682; FT with=GeneDB_Spombe:SPAC1486.05; date=20050920" FT /GO="aspect=P; term=chromatin silencing at centromere; FT GOid=GO:0030702; evidence=IMP; db_xref=PMID:16024659; FT date=20050901" FT /GO="aspect=P; term=chromatin silencing at silent FT mating-type cassette; GOid=GO:0030466; evidence=IMP; FT db_xref=PMID:16157682; date=20050920" FT /GO="aspect=P; term=chromatin silencing at telomere; FT GOid=GO:0006348; evidence=IMP; db_xref=PMID:16157682; FT date=20050920" FT /GO="aspect=P; term=meiotic chromosome segregation; FT GOid=GO:0045132; evidence=IMP; db_xref=PMID:16040243; FT date=20050901" FT /GO="aspect=P; term=meiotic sister chromatid cohesion, FT centromeric; GOid=GO:0051754; evidence=IMP; FT db_xref=PMID:16040243; date=20050901" FT /GO="aspect=P; term=mitotic sister chromatid segregation; FT GOid=GO:0000070; evidence=IMP; db_xref=PMID:16040243; FT date=20050901" FT /GO="aspect=P; term=negative regulation of histone H3-K4 FT methylation; GOid=GO:0051572; evidence=IMP; FT db_xref=PMID:16024659; date=20050901" FT /GO="aspect=P; term=positive regulation of histone H3-K9 FT methylation; GOid=GO:0051574; evidence=IMP; FT db_xref=PMID:16024659; date=20050901" FT /GO="aspect=P; term=protein localization; FT qualifier=localization_dependency; GOid=GO:0008104; FT evidence=IGI; db_xref=PMID:16040243; FT with=GeneDB_Spombe:SPAC664.01c; date=20050901" FT /GO="aspect=P; term=regulation of mating type switching; FT GOid=GO:0031494; evidence=IMP; db_xref=PMID:16157682; FT date=20050920" FT /GO="aspect=P; term=small RNA-mediated chromatin FT silencing; GOid=GO:0031048; evidence=IMP; FT db_xref=PMID:16040243; date=20050901" FT /GO="aspect=P; term=telomere clustering; GOid=GO:0045141; FT evidence=IMP; db_xref=PMID:16040243; date=20050901" FT /GO="aspect=C; term=nuclear centric heterochromatin; FT GOid=GO:0031618; evidence=IC; db_xref=PMID:17072883; FT from=GO:0043494; date=20051018" FT /colour=2 FT /fasta_file="fasta/c613.tab.seq.00043.out" FT /note="cullin-associated methyltransferase complex subunit FT Cmc1" FT /note="Rik1-associated factor Raf1" FT /note="delocalization of swi6 Dos1" FT /primary_name="raf1" FT /product="Rik1-associated factor Raf1" FT /synonym="dos1" FT /synonym="cmc1" FT /synonym="clr8" FT /systematic_id="SPCC613.12c" FT /gene="raf1" FT /gene="dos1" FT /gene="cmc1" FT /gene="clr8" FT /gene="SPCC613.12c" FT /controlled_curation="term=WD repeat protein; FT date=19700101" FT /controlled_curation="term=non-essential; FT db_xref=PMID:16040243; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=similar to N.crassa B13I18.130; FT date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(102685..105576) FT /GO="aspect=F; term=ATP-dependent DNA helicase activity; FT GOid=GO:0004003; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00176; date=20040924" FT /GO="aspect=P; term=nucleotide-excision repair; FT GOid=GO:0006289; evidence=TAS; db_xref=PMID:8879272; FT date=20050413" FT /GO="aspect=F; term=ubiquitin-protein ligase activity; FT GOid=GO:0004842; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00097; date=20050413" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; evidence=IC; FT db_xref=PMID:17072883; from=GO:0008094; date=20050413" FT /GO="aspect=P; term=protein ubiquitination; FT GOid=GO:0016567; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00097; date=20060726" FT /GO="aspect=F; term=zinc ion binding; GOid=GO:0008270; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00097; FT date=20060726" FT /GO="aspect=C; term=nucleotide-excision repair complex; FT GOid=GO:0000109; evidence=IPI; db_xref=PMID:10446227; FT with=GeneDB_Spombe:SPCC330.02; date=20050310" FT /GO="aspect=P; term=nucleotide-excision repair; FT qualifier=different_pathway; GOid=GO:0006289; FT evidence=IGI; db_xref=PMID:10446227; FT with=GeneDB_Spombe:SPBC3E7.08c; date=20050310" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:10446227; FT with=GeneDB_Spombe:SPCC330.02; date=20061027" FT /GO="aspect=P; term=cellular response to UV; FT GOid=GO:0034644; qualifier=different_pathway; FT evidence=IGI; db_xref=PMID:10446227; FT with=GeneDB_Spombe:SPBC3E7.08c; date=20050310" FT /GO="aspect=F; term=ATP binding; GOid=GO:0005524; FT evidence=ISS; db_xref=PMID:17072883; FT with=InterPro:IPR000330; date=20061027" FT /colour=2 FT /controlled_curation="term=ubiquitin-protein ligase E3; FT date=20060726" FT /controlled_curation="term=zinc finger protein; FT date=20060726" FT /controlled_curation="term=zf-C3HC4 type (RING finger); FT date=20060726" FT /controlled_curation="term=divergently oriented to rhp16; FT db_xref=PMID:10446227; date=20061027" FT /controlled_curation="term=conserved protein (fungal and FT plant); date=20070309" FT /controlled_curation="term=DEAD/DEAH box helicase; FT date=19700101" FT /controlled_curation="term=SNF2 family; date=19700101" FT /controlled_curation="term=non-essential; FT db_xref=PMID:8879272; date=19700101" FT /controlled_curation="term=helicase C-terminal domain; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YBR114W; date=19700101" FT /fasta_file="fasta/c613.tab.seq.00044.out" FT /fasta_file="fasta/c330.tab.seq.00059.out" FT /primary_name="rhp16" FT /product="Rad16 homolog Rhp16" FT /synonym="SPCC613.13c" FT /synonym="rad16" FT /systematic_id="SPCC330.01c" FT /gene="rhp16" FT /gene="SPCC613.13c" FT /gene="SPCC330.01c" FT /gene="rad16" FT misc_feature complement(103512..108799) FT /note="nominal overlap with cosmid SPCC613, EM:AL031644 S. FT pombe chromosome 3" FT misc_feature 103512..108799 FT /note="nominal overlap with cosmid SPCC330, EM:AL031603 S. FT pombe chromosome 3" FT CDS join(105680..105736,105785..107419) FT /GO="aspect=C; term=nucleotide-excision repair complex; FT GOid=GO:0000109; evidence=IPI; db_xref=PMID:10446227; FT with=GeneDB_Spombe:SPCC330.01c; date=20050310" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:10446227; FT with=GeneDB_Spombe:SPCC330.01c; date=20061027" FT /GO="aspect=P; term=nucleotide-excision repair; FT qualifier=different_pathway; GOid=GO:0006289; FT evidence=IGI; db_xref=PMID:10446227; FT with=GeneDB_Spombe:SPBC3E7.08c; date=20050310" FT /GO="aspect=P; term=cellular response to UV; FT GOid=GO:0034644; qualifier=different_pathway; FT evidence=IGI; db_xref=PMID:10446227; FT with=GeneDB_Spombe:SPBC3E7.08c; date=20050310" FT /colour=2 FT /fasta_file="fasta/c613.tab.seq.00045.out" FT /fasta_file="fasta/c330.tab.seq.00060.out" FT /primary_name="rhp7" FT /product="Rad7 homolog Rhp7" FT /synonym="SPCC613.14" FT /systematic_id="SPCC330.02" FT /gene="rhp7" FT /gene="SPCC330.02" FT /gene="SPCC613.14" FT /controlled_curation="term=divergently oriented to rhp16; FT db_xref=PMID:10446227; date=20061027" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070309" FT /controlled_curation="term=leucine-rich repeat protein; FT qualifier=predicted; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YJR052W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature 105737..105742 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 105769..105784 FT /colour=6 FT /note="ctaatgcattattcag, splice branch and acceptor" FT CDS complement(join(108005..108257,108318..108337)) FT /colour=8 FT /fasta_file="fasta/c330.tab.seq.00079.out" FT /note="added Sept 4 2002, confirmed by EST, val" FT /product="sequence orphan" FT /systematic_id="SPCC330.19c" FT /gene="SPCC330.19c" FT /controlled_curation="term=sequence orphan; date=19700101" FT /controlled_curation="term=sequence orphan, FT uncharacterised; date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT misc_feature complement(join(108005..108257,108318..108337)) FT /note="see c330 for annotation" FT intron complement(108258..108317) FT /note="confirmed by EST" FT /gene="SPCC330.19c" FT LTR 108555..108863 FT /colour=4 FT /note="degraded tf2 type LTR" FT /note="LTR" FT CDS complement(join(109871..109938,109994..110171,110311..110502)) FT /GO="aspect=F; term=heme binding; GOid=GO:0020037; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00173; FT date=20051229" FT /GO="aspect=P; term=heme metabolism; GOid=GO:0042168; FT evidence=IC; db_xref=PMID:17072883; from=GO:0003958; FT date=20061017" FT /GO="aspect=F; term=NADPH-hemoprotein reductase activity; FT GOid=GO:0003958; evidence=ISS; db_xref=PMID:17072883; FT with=RGD:621834; date=20061017" FT /colour=7 FT /fasta_file="fasta/c330.tab.seq.00062.out" FT /product="NADPH-hemoprotein reductase" FT /systematic_id="SPCC330.03c" FT /gene="SPCC330.03c" FT /controlled_curation="term=cytochrome b5 family; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YMR073C; date=19700101" FT /controlled_curation="term=similar to S. pombe FT SPAC1F12.10C (paralog); date=19700101" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070319" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(109939..109953) FT /colour=6 FT /note="ttaacaactatatag, splice branch and acceptor" FT misc_feature complement(109988..109993) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature complement(110172..110189) FT /colour=6 FT /note="ctaacaccgatgctttag, splice branch and acceptor" FT misc_feature complement(110305..110310) FT /colour=6 FT /note="gtatga, splice donor sequence" FT misc_feature complement(join(110579..110618,110735..110877,110987..111021,111059..111131)) FT /fasta_file="fasta/c330.tab.seq.00078.out" FT /note="c330.C.cand.9 score = 8.82" FT LTR complement(111397..111560) FT /note="LTR-fragment" FT CDS complement(112305..113378) FT /colour=10 FT /fasta_file="fasta/c330.tab.seq.00063.out" FT /note="biased repeat containing protein - 6 copies of FT 'WKKAREEDKAE' repeat and 6 copies of a smaller 'WRNSMDE' FT repeat" FT /product="DUF1773 family protein 3" FT /systematic_id="SPCC330.04c" FT /primary_name="mug135" FT /gene="SPCC330.04c" FT /gene="mug135" FT /controlled_curation="term=conserved fungal family; FT date=19700101" FT /controlled_curation="term=DUF1773; date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=repeat containing; FT date=19700101" FT /controlled_curation="term=meiotic expression upregulated; FT db_xref=PMID:16303567; date=20080908" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT tRNA complement(113716..113786) FT /gene="SPCTRNAGLY.10" FT /note="tRNA Gly anticodon GCC" FT /product="tRNA Glycine" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=RCA; db_xref=PMID:17072883; date=20070711" FT /GO="aspect=P; term=translational elongation; FT GOid=GO:0006414; evidence=RCA; db_xref=PMID:17072883; FT date=20070711" FT /GO="aspect=F; term=GCC codon-amino acid adaptor activity; FT GOid=GO:0033454; evidence=RCA; db_xref=PMID:17072883; FT date=20070711" FT /systematic_id="SPCTRNAGLY.10" FT LTR 114382..114730 FT /colour=4 FT /note="tf2 type LTR" FT misc_RNA complement(115394..115476) FT /controlled_curation="term=non-coding RNA; FT qualifier=predicted; db_xref=EMBL:AU014447; date=20050412" FT /controlled_curation="term=no detectable long open reading FT frame; qualifier=predicted; db_xref=EMBL:AU014447; FT date=20050412" FT /db_xref="EMBL:AU014447" FT /gene="SPNCRNA.129" FT /note="from AU014447 spc09864; RNA not associated with an FT ORF" FT /product="non-coding RNA (predicted)" FT /systematic_id="SPNCRNA.129" FT 3'UTR complement(115589..115780) FT /note="mRNA from S60039" FT /gene="ura4" FT /gene="SPCC330.05c" FT CDS complement(115781..116575) FT /EC_number="4.1.1.23" FT /GO="aspect=F; term=orotidine-5'-phosphate decarboxylase FT activity; GOid=GO:0004590; evidence=IGI; FT db_xref=PMID:2834100; with=UniProtKB:PYRF_ECOLI; FT date=20050708" FT /GO="aspect=P; term='de novo' pyrimidine base FT biosynthesis; qualifier=sixth_step; GOid=GO:0006207; FT evidence=IGI; db_xref=PMID:2834100; FT with=UniProtKB:PYRF_ECOLI; date=20050708" FT /colour=2 FT /fasta_file="fasta/c330.tab.seq.00002.out" FT /primary_name="ura4" FT /product="orotidine 5'-phosphate decarboxylase Ura4 (PMID FT 2834100)" FT /systematic_id="SPCC330.05c" FT /gene="ura4" FT /gene="SPCC330.05c" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070309" FT /controlled_curation="term=regulated by the SAPK pathway; FT db_xref=PMID:12521309; date=19700101" FT /controlled_curation="term=expression induced by glucose; FT db_xref=PMID:12521309; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YEL021W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 3'UTR complement(118222..118422) FT /note="mRNA from AU010632" FT /gene="SPCC330.06c" FT CDS complement(118423..118893) FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000004099; FT date=20050708" FT /GO="aspect=F; term=thioredoxin peroxidase activity; FT GOid=GO:0008379; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000004099; date=20050708" FT /GO="aspect=P; term=cell redox homeostasis; FT GOid=GO:0045454; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000004099; date=20050708" FT /GO="aspect=P; term=response to oxidative stress; FT GOid=GO:0006979; evidence=ISS; db_xref=GOC:unpublished; FT with=SGD:S000004099; date=20071105" FT /GO="aspect=P; term=response to stress; GOid=GO:0006950; FT evidence=IC; db_xref=PMID:17072883; from=GO:0008379; FT date=20070821" FT /colour=7 FT /fasta_file="fasta/c330.tab.seq.00065.out" FT /product="thioredoxin peroxidase" FT /systematic_id="SPCC330.06c" FT /gene="SPCC330.06c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=AhpC/TSA family; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YLR109W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 5'UTR complement(118894..119002) FT /note="mRNA from SPAJ2536" FT /gene="SPCC330.06c" FT misc_RNA 120113..120204 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /controlled_curation="term=uncertain; date=20071010" FT /systematic_id="SPNCRNA.455" FT /note="WARNING:this transcript could be on either strand" FT /synonym="SPNG2041" FT /product="non-coding RNA (predicted)" FT rep_origin 120294..120836 FT /colour=3 FT /label=ars3003 FT /note="ars3003 ranks second (behind ars3002 and ahead of FT ars3004) in frequency of usage at the ura4 origin (MEDLINE FT 93178199) (MEDLINE 95163397)" FT CDS complement(120913..122415) FT /colour=7 FT /controlled_curation="term=conserved family; FT date=20070427" FT /controlled_curation="term=membrane transporter; FT date=19700101" FT /controlled_curation="term=orthologs cannot be FT distinguished; date=19700101" FT /controlled_curation="term=similar to S. pombe SPCC613.02 FT and SPCC613.01 and SPCC757.11C; date=19700101" FT /controlled_curation="term=12 predicted transmembrane FT helices; date=19700101" FT /fasta_file="fasta/c330.tab.seq.00066.out" FT /product="membrane transporter" FT /systematic_id="SPCC330.07c" FT /GO="aspect=F; term=transmembrane transporter activity; FT GOid=GO:0022857; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF07690; date=20070821" FT /GO="aspect=P; term=transport; GOid=GO:0006810; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF07690; FT date=20070821" FT /gene="SPCC330.07c" FT 5'UTR complement(122416..122896) FT /note="mRNA from AU008976" FT /gene="SPCC330.07c" FT rep_origin 123056..124035 FT /colour=3 FT /label=ars3002 FT /note="ars3003 ranks second (behind ars3002 and ahead of FT ars3004) in frequency of usage at the ura4 origin (MEDLINE FT 93178199) (MEDLINE 95163397)" FT conflict 123340 FT /citation=[1] FT /note="indeterminate no of bases in polyA tract" FT rep_origin 123636..125101 FT /colour=3 FT /label=ars3004 FT /note="ars3004; autonomously replicating sequence" FT CDS 124563..125978 FT /EC_number="2.4.1.-" FT /GO="aspect=F; term=alpha-1,2-mannosyltransferase FT activity; qualifier=heterologous_system; GOid=GO:0000026; FT evidence=IGI; db_xref=PMID:17072883; with=SGD:S000004993; FT date=20050228" FT /GO="aspect=P; term=protein amino acid glycosylation; FT qualifier=heterologous_system; GOid=GO:0006486; FT evidence=IGI; db_xref=PMID:17072883; with=SGD:S000004993; FT date=20050228" FT /GO="aspect=C; term=endoplasmic reticulum; FT qualifier=heterologous_system; GOid=GO:0005783; FT evidence=IGI; db_xref=PMID:17072883; with=SGD:S000004993; FT date=20050228" FT /GO="aspect=P; term=protein amino acid N-linked FT glycosylation; GOid=GO:0006487; evidence=TAS; FT db_xref=PMID:11015724; date=20050228" FT /GO="aspect=C; term=mannosyltransferase complex subunit; FT GOid=GO:0000136; evidence=IC; db_xref=PMID:17072883; FT from=GO:0000026; date=20070207" FT /colour=2 FT /fasta_file="fasta/c330.tab.seq.00067.out" FT /primary_name="alg11" FT /product="alpha-1,2-mannosyltransferase Alg11" FT /synonym="gmd3" FT /systematic_id="SPCC330.08" FT /gene="alg11" FT /gene="gmd3" FT /gene="SPCC330.08" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=glycosyl transferase family 1; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YNL048W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS 127294..129198 FT /GO="aspect=P; term=rRNA processing; GOid=GO:0006364; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000003377; FT date=20041004" FT /GO="aspect=C; term=nucleolus; GOid=GO:0005730; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000003377; FT date=20060911" FT /colour=7 FT /fasta_file="fasta/c330.tab.seq.00068.out" FT /product="rRNA processing protein Enp2 (predicted)" FT /systematic_id="SPCC330.09" FT /gene="SPCC330.09" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=WD repeat protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YGR145W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS 129844..131013 FT /EC_number="2.1.1.56" FT /GO="aspect=C; term=DNA-directed RNA polymerase II, FT holoenzyme; qualifier=heterologous_system; FT GOid=GO:0016591; evidence=ISS; db_xref=PMID:10347220; FT with=UniProtKB:P32783; date=20050708" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT qualifier=heterologous_system; evidence=IGI; FT db_xref=PMID:10347220; with=UniProtKB:P32783; FT date=20050708" FT /GO="aspect=F; term=mRNA (guanine-N7-)-methyltransferase FT activity; qualifier=heterologous_system; GOid=GO:0004482; FT evidence=IGI; db_xref=PMID:10347220; FT with=UniProtKB:P32783; date=20050708" FT /GO="aspect=P; term=RNA methylation; GOid=GO:0001510; FT evidence=IC; db_xref=PMID:17072883; from=GO:0004482; FT date=20050708" FT /GO="aspect=P; term=mRNA capping; GOid=GO:0006370; FT qualifier=heterologous_system; evidence=IGI; FT db_xref=PMID:10347220; with=UniProtKB:P32783; FT date=20050708" FT /colour=2 FT /fasta_file="fasta/c330.tab.seq.00069.out" FT /primary_name="pcm1" FT /product="mRNA capping methyltransferase" FT /systematic_id="SPCC330.10" FT /gene="pcm1" FT /gene="SPCC330.10" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=similar to S. cerevisiae FT YBR236C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS 131517..135560 FT /GO="aspect=C; term=ubiquitin ligase complex; FT GOid=GO:0000151; evidence=IPI; db_xref=PMID:14527422; FT with=GeneDB_Spombe:SPAC24H6.03; date=20050519" FT /GO="aspect=F; term=protein binding; qualifier=PF00651; FT GOid=GO:0005515; evidence=IPI; db_xref=PMID:14527422; FT with=GeneDB_Spombe:SPAC24H6.03; date=20050519" FT /GO="aspect=P; term=ubiquitin-dependent protein FT catabolism; GOid=GO:0006511; evidence=IC; FT db_xref=PMID:17072883; from=GO:0000151; date=20060911" FT /colour=2 FT /fasta_file="fasta/c330.tab.seq.00070.out" FT /primary_name="btb1" FT /product="BTB/POZ domain protein Btb1" FT /systematic_id="SPCC330.11" FT /gene="btb1" FT /gene="SPCC330.11" FT /controlled_curation="term=regulator of condensation FT (RCC1) domains; qualifier=inferred_from_context; FT date=20060825" FT /controlled_curation="term=BTB/POZ domain; date=19700101" FT /controlled_curation="term=ankyrin repeat protein; FT date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 3'UTR complement(135724..135956) FT /note="mRNA from AU009197" FT /gene="sdh3" FT /gene="SPCC330.12c" FT CDS complement(135957..136499) FT /GO="aspect=C; term=respiratory chain complex II (sensu FT Eukaryota); GOid=GO:0005749; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P33421; date=20030714" FT /GO="aspect=F; term=succinate dehydrogenase (ubiquinone) FT activity; GOid=GO:0008177; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P33421; date=20030714" FT /GO="aspect=P; term=mitochondrial electron transport, FT succinate to ubiquinone; GOid=GO:0006121; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P33421; date=20030714" FT /GO="aspect=P; term=succinate metabolism; GOid=GO:0006105; FT evidence=IC; db_xref=PMID:17072883; from=GO:0008177; FT date=20030714" FT /colour=7 FT /fasta_file="fasta/c330.tab.seq.00071.out" FT /primary_name="sdh3" FT /product="succinate dehydrogenase (ubiquinone) cytochrome FT b subunit" FT /systematic_id="SPCC330.12c" FT /gene="sdh3" FT /gene="SPCC330.12c" FT /controlled_curation="term=similar to S. cerevisiae FT YKL141W and YMR118C; date=19700101" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070319" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS 137021..137749 FT /GO="aspect=F; term=DNA-directed RNA polymerase activity; FT GOid=GO:0003899; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001733; date=20060925" FT /GO="aspect=P; term=transcription from RNA polymerase III FT promoter; GOid=GO:0006383; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000001733; date=20060925" FT /GO="aspect=C; term=DNA-directed RNA polymerase III FT complex; GOid=GO:0005666; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000001733; date=20060925" FT /colour=7 FT /fasta_file="fasta/c330.tab.seq.00072.out" FT /primary_name="rpc37" FT /product="DNA-directed RNA polymerase III complex subunit FT Rpc37" FT /systematic_id="SPCC330.13" FT /gene="rpc37" FT /gene="SPCC330.13" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070425" FT /controlled_curation="term=similar to S. cerevisiae FT YKR025W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(138096..138545) FT /GO="aspect=P; term=protein biosynthesis; GOid=GO:0006412; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002999; FT date=20070104" FT /GO="aspect=F; term=structural constituent of ribosome; FT GOid=GO:0003735; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002999; date=20070104" FT /GO="aspect=C; term=cytosolic large ribosomal subunit FT (sensu the Eukaryota research community); GOid=GO:0022625; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002999; FT date=20070104" FT /colour=7 FT /fasta_file="fasta/c330.tab.seq.00073.out" FT /primary_name="rpl2402" FT /product="60S ribosomal protein L24" FT /synonym="rpl24-2" FT /systematic_id="SPCC330.14c" FT /gene="rpl2402" FT /gene="rpl24-2" FT /gene="SPCC330.14c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070425" FT /controlled_curation="term=similar to S. cerevisiae FT YGL031C and YGR148C and YLR009W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(138514..138545) FT /note="rpl24-2 see c330 for full length CDS" FT misc_feature complement(138514..146200) FT /note="nominal overlap with cosmid SPCC330 and SPCC320" FT CDS complement(139222..140193) FT /EC_number="4.3.1.16" FT /GO="aspect=P; term=threonine catabolism; GOid=GO:0006567; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P36007; FT date=20030904" FT /GO="aspect=F; term=threo-3-hydroxyaspartate ammonia-lyase FT activity; GOid=GO:0030848; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P36007; date=20030904" FT /colour=7 FT /fasta_file="fasta/c330.tab.seq.00074.out" FT /fasta_file="fasta/c320.tab.seq.00001.out" FT /note="annotations dervived from PMID:12951240, previously FT annotated as threonine dehydratase" FT /product="threo-3-hydroxyaspartate ammonia-lyase FT (predicted)" FT /db_xref="PATH:MAP00260;" FT /synonym="SPCC330.15c" FT /systematic_id="SPCC320.14" FT /gene="SPCC330.15c" FT /gene="SPCC320.14" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070427" FT /controlled_curation="term=similar to S. cerevisiae FT YKL218C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT tRNA 140967..141038 FT /gene="SPCTRNAGLU.09" FT /note="tRNA Glu anticodon CTC" FT /note="tRNA Glu anticodon CTC, Cove score 74.15" FT /product="tRNA Glutamic acid" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=RCA; db_xref=PMID:17072883; date=20070711" FT /GO="aspect=P; term=translational elongation; FT GOid=GO:0006414; evidence=RCA; db_xref=PMID:17072883; FT date=20070711" FT /GO="aspect=F; term=CTC codon-amino acid adaptor activity; FT GOid=GO:0033418; evidence=RCA; db_xref=PMID:17072883; FT date=20070711" FT /systematic_id="SPCTRNAGLU.09" FT misc_RNA 141220..141422 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /systematic_id="SPNCRNA.456" FT /note="WARNING:this transcript could be on either strand" FT /note="possible UTR for ark1" FT /synonym="SPNG2045" FT /product="non-coding RNA (predicted)" FT misc_RNA complement(141429..141634) FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /controlled_curation="term=antisense; date=20071120" FT /systematic_id="SPNCRNA.457" FT /synonym="SPNG2046" FT /product="non-coding RNA (predicted)" FT /note="possibly antisense to ark1" FT CDS 141662..142729 FT /GO="aspect=C; term=chromosome passenger complex; FT GOid=GO:0032133; evidence=NAS; db_xref=PMID:17072883; FT date=20060818" FT /GO="aspect=C; term=condensed chromosome kinetochore; FT qualifier=during_mitosis; GOid=GO:0000777; evidence=IDA; FT db_xref=PMID:11792803; date=20041203" FT /GO="aspect=C; term=spindle midzone; FT qualifier=during_anaphase; GOid=GO:0051233; evidence=IDA; FT db_xref=PMID:11792803; date=20041203" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:11950927; FT with=GeneDB_Spombe:SPBC336.15; date=20041203" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:15525536; FT with=GeneDB_Spombe:SPAC1782.09c; date=20050108" FT /GO="aspect=F; term=protein binding; FT qualifier=phosphorylates; GOid=GO:0005515; evidence=IPI; FT db_xref=PMID:11792803; with=GeneDB_Spombe:SPAC1834.04; FT date=20041203" FT /GO="aspect=F; term=protein binding; FT qualifier=phosphorylates; GOid=GO:0005515; evidence=IPI; FT db_xref=PMID:11792803; with=GeneDB_Spombe:SPBC1105.11c; FT date=20041203" FT /GO="aspect=F; term=protein binding; FT qualifier=phosphorylates; GOid=GO:0005515; evidence=IPI; FT db_xref=PMID:11792803; with=GeneDB_Spombe:SPBC8D2.04; FT date=20041203" FT /GO="aspect=F; term=protein serine/threonine kinase FT activity; GOid=GO:0004674; evidence=IDA; FT db_xref=PMID:11792803; date=20041203" FT /GO="aspect=P; term=attachment of spindle microtubules to FT kinetochore during mitosis; GOid=GO:0051315; evidence=TAS; FT db_xref=PMID:17627824; date=20070718" FT /GO="aspect=P; term=condensin localization to nucleolar FT rDNA repeats; qulaifier=localization_dependency; FT GOid=GO:0034503; evidence=IGI; db_xref=PMID:18362178; FT with=GeneDB_Spombe:SPBP4H10.06c; date=20080602" FT /GO="aspect=P; term=cytokinesis; GOid=GO:0000910; FT evidence=IMP; db_xref=PMID:11950927; date=20041203" FT /GO="aspect=P; term=mitotic sister chromatid segregation; FT GOid=GO:0000070; evidence=IGI; db_xref=PMID:11950927; FT with=GeneDB_Spombe:SPBC336.15; date=20041203" FT /GO="aspect=P; term=mitotic sister chromatid segregation; FT GOid=GO:0000070; evidence=IGI; db_xref=PMID:11950927; FT with=GeneDB_Spombe:SPCC962.02c; date=20041203" FT /GO="aspect=P; term=mitotic sister chromatid segregation; FT GOid=GO:0000070; evidence=IMP; db_xref=PMID:11792803; FT date=20041203" FT /GO="aspect=P; term=mitotic spindle checkpoint; FT GOid=GO:0007094; evidence=IMP; db_xref=PMID:12676091; FT date=20041203" FT /GO="aspect=P; term=protein amino acid phosphorylation; FT GOid=GO:0006468; evidence=IC; db_xref=PMID:17072883; FT from=GO:0004674; date=20041203" FT /GO="aspect=P; term=protein localization to kinetochore; FT qulaifier=localization_dependency; GOid=GO:0034501; FT evidence=IGI; db_xref=PMID:18362178; FT with=GeneDB_Spombe:SPBP4H10.06c; date=20080602" FT /GO="aspect=P; term=sister chromatid biorientation; FT GOid=GO:0031134; evidence=TAS; db_xref=PMID:16199877; FT date=20060123" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=NAS; db_xref=GOC:unpublished; date=20080908" FT /colour=2 FT /fasta_file="fasta/c330.tab.seq.00075.out" FT /fasta_file="fasta/c320.tab.seq.00039.out" FT /note="08.01.3003 trimmed to 2nd met (PMID 12676091)" FT /obsolete_name="SPCC320.12c" FT /primary_name="ark1" FT /product="aurora-B kinase Ark1" FT /synonym="aim1" FT /synonym="SPCC330.16" FT /systematic_id="SPCC320.13c" FT /gene="ark1" FT /gene="SPCC330.16" FT /gene="SPCC320.13c" FT /gene="aim1" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20060920" FT /controlled_curation="term=disease associated, aneuploidy; FT date=20060920" FT /controlled_curation="term=essential; FT db_xref=PMID:11792803; date=19700101" FT /controlled_curation="term=transcriptionally regulated by FT Sep1; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YPL209C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 141662..141664 FT /note="initiator methionine, confirmed PMID 12676091" FT CDS complement(join(143220..143227,143294..143843)) FT /GO="aspect=F; term=metalloendopeptidase activity; FT GOid=GO:0004222; evidence=ISS; db_xref=PMID:17072883; FT with=InterPro:IPR006025; date=20070402" FT /GO="aspect=P; term=protein complex assembly; FT GOid=GO:0006461; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000005303; date=20070402" FT /GO="aspect=C; term=mitochondrial inner membrane; FT GOid=GO:0005743; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000005303; date=20070402" FT /GO="aspect=P; term=F-type ATPase complex assembly; FT GOid=GO:0043461; evidence=NAS; db_xref=PMID:17072883; FT date=20070402" FT /GO="aspect=P; term=protein processing; GOid=GO:0016485; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005303; FT date=20070402" FT /colour=7 FT /fasta_file="fasta/c330.tab.seq.00076.out" FT /fasta_file="fasta/c320.tab.seq.00020.out" FT /product="mitochondrial inner membrane peptidase Atp23" FT /synonym="SPCC330.17c" FT /systematic_id="SPCC320.12" FT /gene="SPCC330.17c" FT /gene="SPCC320.12" FT /controlled_curation="term=UPF0172; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YNR020C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(143228..143251) FT /colour=6 FT /note="ctaactattcattctttcgtctag, splice branch and FT acceptor" FT misc_feature complement(143288..143293) FT /colour=6 FT /note="gtacgt, splice donor sequence" FT CDS join(144380..144435,144589..144675,144838..145237) FT /GO="aspect=P; term=ribosome biogenesis and assembly; FT GOid=GO:0042254; evidence=ISS; db_xref=PMID:17072883; FT with=UNIPROT:Q08962; date=20041004" FT /colour=7 FT /fasta_file="fasta/c330.tab.seq.00077.out" FT /fasta_file="fasta/c320.tab.seq.00021.out" FT /product="RNA-binding protein" FT /synonym="SPCC330.18" FT /systematic_id="SPCC320.11c" FT /gene="SPCC330.18" FT /gene="SPCC320.11c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=PUA domain;qualifier=SMART; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YPL211W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 144436..144441 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT intron 144436..144588 FT /note="confirmed, by homology" FT /gene="SPCC330.18" FT /gene="SPCC320.11c" FT misc_feature 144572..144588 FT /colour=6 FT /note="ctgactagtaaaactag, splice branch and acceptor" FT misc_feature 144676..144681 FT /colour=6 FT /note="gtaaga, splice donor sequence" FT misc_feature 144823..144837 FT /colour=6 FT /note="ttaacatacttatag, splice branch and acceptor" FT misc_feature 145238..145562 FT /note="mRNA from AU006574" FT /note="3'UTR mapped fully as UTR on cosmid c330" FT 3'UTR 145238..145562 FT /note="mRNA from AU006574" FT /systematic_id="SPCC320.11c" FT /gene="SPCC330.18" FT /gene="SPCC320.11c" FT 3'UTR complement(146165..146209) FT /note="mRNA from AU008365" FT /gene="srp72" FT /gene="SPCC320.10" FT CDS complement(join(146210..147251,147298..147617,147669..147731,147868..148128)) FT /GO="aspect=P; term=SRP-dependent cotranslational protein FT targeting to membrane; GOid=GO:0006614; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000006131; date=20050414" FT /GO="aspect=F; term=signal sequence binding; FT qualifier=contributes_to; GOid=GO:0005048; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000006131; date=20050414" FT /GO="aspect=C; term=signal recognition particle (sensu FT Eukaryota); GOid=GO:0005786; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000006131; date=20050414" FT /colour=7 FT /fasta_file="fasta/c320.tab.seq.00034.out" FT /primary_name="srp72" FT /product="signal recognition particle subunit Srp72" FT /systematic_id="SPCC320.10" FT /gene="srp72" FT /gene="SPCC320.10" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=TPR repeat protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YPL210C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(147252..147268) FT /colour=6 FT /note="ctaattttgataaacag, splice branch and acceptor" FT misc_feature complement(147292..147297) FT /colour=6 FT /note="gtatga, splice donor sequence" FT misc_feature complement(147618..147632) FT /colour=6 FT /note="ctaacttttaactag, splice branch and acceptor" FT misc_feature complement(147663..147668) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature complement(147732..147748) FT /colour=6 FT /note="ctaacaacttattgaag, splice branch and acceptor" FT misc_feature complement(147862..147867) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT CDS complement(join(149153..150163,150279..150323,150374..150472)) FT /EC_number="4.99.1.1" FT /GO="aspect=C; term=mitochondrial inner membrane; FT GOid=GO:0005743; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P16622; date=20040629" FT /GO="aspect=P; term=heme biosynthesis; FT qualifier=eighth_step; GOid=GO:0006783; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P16622; date=20040629" FT /GO="aspect=F; term=ferrochelatase activity; FT GOid=GO:0004325; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P16622; date=20040629" FT /colour=7 FT /fasta_file="fasta/c320.tab.seq.00032.out" FT /primary_name="hem15" FT /product="ferrochelatase" FT /reserved_name="hem15" FT /systematic_id="SPCC320.09" FT /gene="hem15" FT /gene="SPCC320.09" FT /controlled_curation="term=disease associated, porphyria; FT date=20060725" FT /controlled_curation="term=similar to S. cerevisiae FT YOR176W; date=19700101" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070319" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(150164..150176) FT /colour=6 FT /note="ctaatgttttcag, splice branch and acceptor" FT misc_feature complement(150273..150278) FT /colour=6 FT /note="gtaaga, splice donor sequence" FT misc_feature complement(150324..150340) FT /colour=6 FT /note="ctaacagaggtgtgcag, splice branch and acceptor" FT misc_feature complement(150368..150373) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT 3'UTR complement(151093..151306) FT /note="mRNA from AU009770" FT /gene="SPCC320.08" FT CDS complement(151307..152824) FT /colour=7 FT /fasta_file="fasta/c320.tab.seq.00033.out" FT /product="membrane transporter (predicted)" FT /systematic_id="SPCC320.08" FT /GO="aspect=F; term=transmembrane transporter activity; FT GOid=GO:0022857; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF06027; date=20070821" FT /GO="aspect=P; term=transport; GOid=GO:0006810; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF06027; FT date=20070821" FT /gene="SPCC320.08" FT /controlled_curation="term=10 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=DUF914; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 5'UTR complement(152825..152877) FT /note="mRNA from AU013350" FT /gene="SPCC320.08" FT CDS 155906..158191 FT /GO="aspect=F; term=RNA binding; GOid=GO:0003723; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00076; FT date=20060201" FT /GO="aspect=P; term=meiosis; GOid=GO:0007126; FT evidence=IEP; db_xref=PMID:10747048; date=20050414" FT /colour=2 FT /fasta_file="fasta/c320.tab.seq.00002.out" FT /primary_name="mde7" FT /product="RNA-binding protein Mde7" FT /systematic_id="SPCC320.07c" FT /gene="mde7" FT /gene="SPCC320.07c" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070427" FT /controlled_curation="term=rrm RNA recognition motif; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YNL197C and YDL224C; date=19700101" FT /controlled_curation="term=transcriptionally regulated by FT Mei4; date=20080612" FT /controlled_curation="term=meiotic expression upregulated; FT db_xref=PMID:16303567; date=20080908" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT CDS complement(join(158577..159193,159251..159503)) FT /colour=8 FT /fasta_file="fasta/c320.tab.seq.00005.out" FT /product="sequence orphan" FT /systematic_id="SPCC320.06" FT /gene="SPCC320.06" FT /controlled_curation="term=sequence orphan; date=19700101" FT /controlled_curation="term=sequence orphan, FT uncharacterised; date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT misc_feature complement(159194..159210) FT /colour=6 FT /note="ctaatatcgactctcag, splice branch and acceptor" FT misc_feature complement(159245..159250) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT CDS complement(159993..161996) FT /colour=7 FT /fasta_file="fasta/c320.tab.seq.00027.out" FT /product="sulphate transporter (predicted)" FT /systematic_id="SPCC320.05" FT /GO="aspect=F; term=sulfate transmembrane transporter FT activity; GOid=GO:0015116; evidence=ISS; FT db_xref=PMID:17072883; with=Pfam:PF00916; date=20070827" FT /GO="aspect=P; term=sulfate transport; GOid=GO:0008272; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00916; FT date=20070827" FT /gene="SPCC320.05" FT /controlled_curation="term=conserved family, broad species FT distribution; date=20070427" FT /controlled_curation="term=similar to S. cerevisiae FT YPR003C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT CDS join(163074..163175,163219..163294,163357..163493,163541..163696,163754..163819,163864..163906,163959..164291,164338..164726,164783..164884,164931..165059,165104..165178,165229..165336,165385..165561) FT /GO="aspect=C; term=mitochondrial outer membrane; FT GOid=GO:0005741; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000000046; date=20050913" FT /GO="aspect=P; term=vesicle-mediated transport; FT GOid=GO:0016192; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000000046; date=20050913" FT /GO="aspect=F; term=GTPase activity; GOid=GO:0003924; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000000046; FT date=20050913" FT /GO="aspect=P; term=mitochondrion organization and FT biogenesis; GOid=GO:0007005; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000000046; date=20050913" FT /GO="aspect=F; term=GTP binding; GOid=GO:0005525; FT evidence=IC; db_xref=PMID:17072883; from=GO:0003924; FT date=20050913" FT /GO="aspect=F; term=calcium ion binding; GOid=GO:0005509; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00036; FT date=20050913" FT /GO="aspect=P; term=small GTPase mediated signal FT transduction; GOid=GO:0007264; evidence=IC; FT db_xref=PMID:17072883; from=GO:0003924; date=20050913" FT /colour=7 FT /fasta_file="fasta/c320.tab.seq.00036.out" FT /product="GTPase Gem1 (PMID 12482879)" FT /systematic_id="SPCC320.04c" FT /gene="SPCC320.04c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=EF hand; date=19700101" FT /controlled_curation="term=1 predicted transmembrane FT helix; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YAL048C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 163176..163181 FT /colour=6 FT /note="gtagct, splice donor sequence" FT misc_feature 163207..163218 FT /colour=6 FT /note="ctaatgcgctag, splice branch and acceptor" FT misc_feature 163295..163300 FT /colour=6 FT /note="gtgaga, splice donor sequence" FT misc_feature 163338..163356 FT /colour=6 FT /note="ctaatatgacgacgtgtag, splice branch and acceptor" FT misc_feature 163494..163499 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 163527..163540 FT /colour=6 FT /note="ctaatataattgag, splice branch and acceptor" FT misc_feature 163697..163702 FT /colour=6 FT /note="gtacgt, splice donor sequence" FT misc_feature 163740..163753 FT /colour=6 FT /note="ctaacaataaaaag, splice branch and acceptor" FT misc_feature 163820..163825 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 163848..163863 FT /colour=6 FT /note="ctaataatcttactag, splice branch and acceptor" FT misc_feature 163907..163912 FT /colour=6 FT /note="gtacgt, splice donor sequence" FT misc_feature 163947..163958 FT /colour=6 FT /note="ctaactagccag, splice branch and acceptor" FT misc_feature 164292..164297 FT /colour=6 FT /note="gtaagc, splice donor sequence" FT misc_feature 164318..164337 FT /colour=6 FT /note="ttaatgtaaaatgcaattag, splice branch and acceptor" FT misc_feature 164727..164732 FT /colour=6 FT /note="gtgagt, splice donor sequence" FT misc_feature 164763..164782 FT /colour=6 FT /note="ctaacttaacattcatctag, splice branch and acceptor" FT misc_feature 164885..164890 FT /colour=6 FT /note="gtatgg, splice donor sequence" FT misc_feature 164912..164930 FT /colour=6 FT /note="ttaaccttttttgtcccag, splice branch and acceptor" FT misc_feature 165060..165065 FT /colour=6 FT /note="gtaaga, splice donor sequence" FT misc_feature 165085..165103 FT /colour=6 FT /note="ctaatctgttctctcttag, splice branch and acceptor" FT misc_feature 165179..165184 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 165210..165228 FT /colour=6 FT /note="ttaacaagttatgtcgtag, splice branch and acceptor" FT misc_feature 165337..165342 FT /colour=6 FT /note="gtgagc, splice donor sequence" FT misc_feature 165367..165384 FT /colour=6 FT /note="ttaacaaatcatttttag, splice branch and acceptor" FT 3'UTR 165562..165664 FT /note="mRNA from AU012111" FT /gene="SPCC320.04c" FT CDS complement(165922..168525) FT /GO="aspect=F; term=transcription factor activity; FT GOid=GO:0003700; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00172; date=20050616" FT /GO="aspect=P; term=regulation of transcription, FT DNA-dependent; GOid=GO:0006355; evidence=ISS; FT db_xref=PMID:17072883; with=Pfam:PF00172; date=20050616" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00172; FT date=20050616" FT /GO="aspect=F; term=zinc ion binding; GOid=GO:0008270; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00172; FT date=20050616" FT /GO="aspect=F; term=DNA binding; GOid=GO:0003677; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00172; FT date=20050616" FT /colour=7 FT /fasta_file="fasta/c320.tab.seq.00003.out" FT /product="transcription factor (predicted)" FT /systematic_id="SPCC320.03" FT /gene="SPCC320.03" FT /controlled_curation="term=conserved fungal family; FT date=20070309" FT /controlled_curation="term=zinc finger protein; FT date=19700101" FT /controlled_curation="term=zf-fungal Zn(2)-Cys(6) FT binuclear cluster domain; date=19700101" FT /controlled_curation="term=regulator of glucose FT transporters; qualifier=predicted; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YBR033W and YKL038W; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_RNA 170771..173539 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /systematic_id="SPNCRNA.458" FT /note="WARNING:this transcript could be on either strand" FT /synonym="SPNG2054" FT /product="non-coding RNA (predicted)" FT misc_feature join(174116..175117,175566..176159) FT /note="none" FT /score=72 FT /colour=75 75 255 FT /fasta_file="%uniprot:fasta/ORFS_100+.seq.04141.out" FT CDS 174183..176159 FT /colour=8 FT /note="~37 copies of a 7-10 repeat consensus 'PMEEITTMTI' FT and a S/N rich C terminal region" FT /product="sequence orphan" FT /synonym="SPCC320.02c" FT /systematic_id="SPCC1235.01" FT /fasta_file="fasta/c320.tab.seq.00006.out" FT /fasta_file="fasta/c1235.tab.seq.00081.out" FT /fasta_file="%uniprot:fasta/chromosome3.contig.seq.04144.out" FT /gene="SPCC320.02c" FT /gene="SPCC1235.01" FT /controlled_curation="term=sequence orphan; date=19700101" FT /controlled_curation="term=glycoprotein; FT qualifier=predicted; date=19700101" FT /controlled_curation="term=sequence orphan, FT uncharacterised; date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT misc_feature 175584..178518 FT /note="nominal overlap with cosmid SPCC1235 and cosmid FT SPCC320" FT CDS 176957..178048 FT /EC_number="2.8.1.6" FT /GO="aspect=F; term=biotin synthase activity; FT qualifier=heterologous_system; GOid=GO:0004076; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000003518; FT date=20050414" FT /GO="aspect=P; term=biotin biosynthesis; FT qualifier=last_step; GOid=GO:0009102; evidence=IC; FT db_xref=PMID:17072883; from=GO:0004076; date=20050321" FT /GO="aspect=C; term=mitochondrion; GOid=GO:0005739; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000003518; FT date=20050321" FT /GO="aspect=P; term=vitamin metabolic process; FT GOid=GO:0006766; evidence=NAS; db_xref=PMID:17072883; FT date=20070916" FT /colour=2 FT /controlled_curation="term=conserved protein (bacterial FT fungal plant); date=20070427" FT /controlled_curation="term=similar to S. cerevisiae FT YGR286C; date=19700101" FT /fasta_file="fasta/c320.tab.seq.00038.out" FT /fasta_file="fasta/c1235.tab.seq.00065.out" FT /primary_name="bio2" FT /product="biotin synthase" FT /synonym="SPCC320.01c" FT /systematic_id="SPCC1235.02" FT /note="vitamin metabolic process hardwired for analysis, FT temporary" FT /gene="bio2" FT /gene="SPCC320.01c" FT /gene="SPCC1235.02" FT CDS 179387..180586 FT /GO="aspect=F; term=ubiquitin binding; GOid=GO:0043130; FT evidence=NAS; db_xref=PMID:17072883; date=20051129" FT /GO="aspect=P; term=DNA repair; GOid=GO:0006281; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF01713; FT date=20061017" FT /colour=7 FT /fasta_file="fasta/c1235.tab.seq.00080.out" FT /product="SMR and CUE domain protein" FT /systematic_id="SPCC1235.03" FT /gene="SPCC1235.03" FT /controlled_curation="term=SMR domain; date=19700101" FT /controlled_curation="term=CUE domain protein; FT qualifier=inferred from context; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YKL090W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 3'UTR 180587..180813 FT /note="mRNA from SPD171" FT /gene="SPCC1235.03" FT CDS complement(join(181068..181319,181368..181776,181830..181966)) FT /EC_number="2.7.7.2" FT /GO="aspect=P; term=FMN metabolism; GOid=GO:0046444; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P38913; FT date=20031015" FT /GO="aspect=P; term=FAD biosynthesis; GOid=GO:0006747; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P38913; FT date=20031015" FT /GO="aspect=F; term=FMN adenylyltransferase activity; FT GOid=GO:0003919; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P38913; date=20031015" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P38913; FT date=20040914" FT /colour=7 FT /fasta_file="fasta/c1235.tab.seq.00067.out" FT /product="FAD synthetase" FT /systematic_id="SPCC1235.04c" FT /gene="SPCC1235.04c" FT /controlled_curation="term=similar to S. cerevisiae FT YDL045C; date=19700101" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070319" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(181320..181330) FT /colour=6 FT /note="ctaaacattag, splice branch and acceptor" FT misc_feature complement(181362..181367) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature complement(181777..181793) FT /colour=6 FT /note="ctaacgtttattacaag, splice branch and acceptor" FT misc_feature complement(181824..181829) FT /colour=6 FT /note="gtatgc, splice donor sequence" FT 3'UTR complement(182768..183022) FT /note="mRNA from AU013698" FT /gene="SPCC1235.05c" FT /gene="fft2" FT CDS complement(183023..186877) FT /GO="aspect=C; term=chromatin remodeling complex; FT GOid=GO:0016585; evidence=NAS; db_xref=PMID:17072883; FT date=20040924" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; evidence=IC; FT db_xref=PMID:17072883; from=GO:0016585; date=20051128" FT /GO="aspect=F; term=ATP binding; GOid=GO:0005524; FT evidence=ISS; db_xref=PMID:17072883; FT with=InterPro:IPR011545; date=20051128" FT /GO="aspect=F; term=ATP-dependent DNA helicase activity; FT GOid=GO:0004003; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00176; date=20060320" FT /GO="aspect=F; term=ATP-dependent DNA helicase activity; FT GOid=GO:0004003; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P31380; date=20041104" FT /GO="aspect=P; term=chromatin remodeling; GOid=GO:0006338; FT evidence=NAS; db_xref=PMID:17072883; date=20040924" FT /GO="aspect=P; term=chromosome organization and biogenesis FT (sensu Eukaryota); GOid=GO:0051276; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P31380; date=20041104" FT /colour=7 FT /fasta_file="fasta/c1235.tab.seq.00068.out" FT /primary_name="fft2" FT /product="fun thirty related protein Fft2" FT /reserved_name="fft2" FT /systematic_id="SPCC1235.05c" FT /gene="SPCC1235.05c" FT /gene="fft2" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=DEAD/DEAH box helicase; FT date=19700101" FT /controlled_curation="term=SNF2 family; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YAL019W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT LTR 187086..187449 FT /colour=4 FT /note="tf1-type LTR" FT CDS join(189259..189783,189844..190092) FT /GO="aspect=C; term=spindle pole body; FT qualifier=colocalizes_with; GOid=GO:0005816; evidence=IPI; FT db_xref=PMID:14655046; with=GeneDB_Spombe:SPBC12D12.01; FT date=20041104" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:14655046; FT with=GeneDB_Spombe:SPBC12D12.01; date=20041104" FT /GO="aspect=P; term=retrograde vesicle-mediated transport, FT Golgi to ER; GOid=GO:0006890; evidence=ISS; FT db_xref=GOC:unpublished; with=SGD:S000000885; FT date=20080409" FT /GO="aspect=C; term=GET complex; GOid=GO:0043529; FT evidence=ISS; db_xref=GOC:unpublished; FT with=SGD:S000000885; date=20080409" FT /colour=2 FT /fasta_file="fasta/c1235.tab.seq.00001.out" FT /primary_name="sif1" FT /product="Sad1 interacting factor 1" FT /systematic_id="SPCC1235.06" FT /gene="sif1" FT /gene="SPCC1235.06" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YER083C; date=20080409" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_feature 189784..189789 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 189826..189843 FT /colour=6 FT /note="ctaatatatttatttcag, splice branch and acceptor" FT CDS join(190730..190845,191023..191179,191238..191402,191526..191822) FT /GO="aspect=C; term=Mis6-Sim4 complex; FT qualifier=colocalizes_with; GOid=GO:0031511; evidence=IDA; FT db_xref=PMID:16079914; date=20050906" FT /GO="aspect=C; term=kinetochore; GOid=GO:0000776; FT evidence=IDA; db_xref=PMID:16079914; date=20050906" FT /GO="aspect=C; term=condensed chromosome, pericentric FT region; qualifier=throughout_cell_cycle|mitotic|meiotic; FT GOid=GO:0000779; evidence=IDA; db_xref=PMID:17035632; FT date=20070529" FT /colour=2 FT /controlled_curation="term=no apparent orthologs; FT date=19700101" FT /controlled_curation="term=coiled-coil; FT qualifier=predicted|region; date=19700101" FT /fasta_file="fasta/c1235.tab.seq.00006.out" FT /note="PMID:17035632 is pending curation" FT /primary_name="fta7" FT /product="Sim4 and Mal2 associated (4 and 2 associated) FT protein 7 (PMID 16079914)" FT /synonym="sma7" FT /synonym="cnl3" FT /systematic_id="SPCC1235.07" FT /gene="fta7" FT /gene="SPCC1235.07" FT /gene="sma7" FT /gene="cnl3" FT misc_feature 190846..190851 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 191002..191022 FT /colour=6 FT /note="ctaactgtgctatcgtaacag, splice branch and acceptor" FT misc_feature 191180..191185 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 191225..191237 FT /colour=6 FT /note="ctaacatttttag, splice branch and acceptor" FT misc_feature 191403..191408 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 191511..191525 FT /colour=6 FT /note="ctaatattttcttag, splice branch and acceptor" FT CDS complement(192446..193126) FT /GO="aspect=C; term=COPI-coated vesicle; FT qualifier=colocalizes_with; GOid=GO:0030137; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000005467; date=20060206" FT /GO="aspect=C; term=Golgi apparatus; GOid=GO:0005794; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005467; FT date=20060206" FT /colour=10 FT /fasta_file="fasta/c1235.tab.seq.00071.out" FT /primary_name="pdh1" FT /product="DUF1751 family protein" FT /systematic_id="SPCC1235.08c" FT /gene="pdh1" FT /gene="SPCC1235.08c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YOL107W; date=19700101" FT /controlled_curation="term=predicted N-terminal signal FT sequence; date=19700101" FT /controlled_curation="term=7 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS join(194552..194603,194694..195460,195499..195918,195971..196426) FT /GO="aspect=C; term=histone deacetylase complex; FT GOid=GO:0000118; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000000307; date=20050808" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000000307; FT date=20050808" FT /GO="aspect=P; term=chromatin silencing; GOid=GO:0006342; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000000307; FT date=20050808" FT /GO="aspect=P; term=histone deacetylation; FT GOid=GO:0016575; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000000307; date=20050808" FT /GO="aspect=P; term=negative regulation of specific FT transcription from RNA polymerase II promoter; FT GOid=GO:0010553; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000000307; date=20050808" FT /colour=7 FT /fasta_file="fasta/c1235.tab.seq.00072.out" FT /product="histone deacetylase complex subunit (predicted)" FT /systematic_id="SPCC1235.09" FT /gene="SPCC1235.09" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=WD repeat protein; FT date=19700101" FT /controlled_curation="term=LisH domain; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YBR103W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 194604..194609 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 194667..194693 FT /colour=6 FT /note="ttaacattatcgtgttttttgttgtag, splice branch and FT accep tor" FT misc_feature 195461..195466 FT /colour=6 FT /note="gtaagg, splice donor sequence" FT misc_feature 195488..195498 FT /colour=6 FT /note="ctaacttttag, splice branch and acceptor" FT misc_feature 195919..195924 FT /colour=6 FT /note="gtaaat, splice donor sequence" FT misc_feature 195955..195970 FT /colour=6 FT /note="ctaacgttttgtatag, splice branch and acceptor" FT CDS complement(join(196809..198830,199029..199133,199196..199223,199279..199316)) FT /GO="aspect=C; term=exocyst; GOid=GO:0000145; FT evidence=IDA; db_xref=PMID:11854409; date=20041108" FT /GO="aspect=P; term=exocytosis; GOid=GO:0006887; FT evidence=IC; db_xref=PMID:17072883; from=GO:0000145; FT date=20041108" FT /GO="aspect=P; term=intracellular protein transport; FT GOid=GO:0006886; evidence=IC; db_xref=PMID:17072883; FT from=GO:0006887; date=20050121" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:11854409; FT with=GeneDB_Spombe:SPBC106.20; date=20041107" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:11854409; FT with=GeneDB_Spombe:SPCC970.09; date=20041107" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:11854409; FT with=GeneDB_Spombe:SPAC13F5.06c; date=20041107" FT /GO="aspect=P; term=cell separation during cytokinesis; FT GOid=GO:0000920; evidence=IMP; db_xref=PMID:11854409; FT date=20041107" FT /GO="aspect=C; term=cell cortex of cell tip; FT GOid=GO:0051285; evidence=IDA; db_xref=PMID:11854409; FT date=20050121" FT /GO="aspect=C; term=contractile ring; FT qualifier=colocalizes_with|during_early_mitosis; FT GOid=GO:0005826; evidence=IDA; db_xref=PMID:11854409; FT date=20050121" FT /colour=2 FT /fasta_file="fasta/c1235.tab.seq.00073.out" FT /primary_name="sec6" FT /product="exocyst complex subunit Sec6" FT /systematic_id="SPCC1235.10c" FT /gene="sec6" FT /gene="SPCC1235.10c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=similar to S. cerevisiae FT YIL068C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(198831..198851) FT /colour=6 FT /note="ctaatgttgatttttttttag, splice branch and acceptor" FT misc_feature complement(199023..199028) FT /colour=6 FT /note="gttagc, splice donor sequence" FT misc_feature complement(199134..199153) FT /colour=6 FT /note="ctaacaattgatgattttag, splice branch and acceptor" FT misc_feature complement(199190..199195) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature complement(199224..199236) FT /colour=6 FT /note="ctaactttgtcag, splice branch and acceptor" FT misc_feature complement(199273..199278) FT /colour=6 FT /note="gtaagg, splice donor sequence" FT 5'UTR 200020..200129 FT /note="mRNA from AU006727" FT /gene="SPCC1235.11" FT CDS join(200130..200131,200172..200276,200365..200459,200643..200683,200750..200844,200900..200987) FT /GO="aspect=C; term=mitochondrion; GOid=GO:0005739; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P53157; FT date=20041016" FT /colour=10 FT /fasta_file="fasta/c1235.tab.seq.00074.out" FT /product="conserved eukaryotic protein" FT /systematic_id="SPCC1235.11" FT /gene="SPCC1235.11" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YGL080W; date=19700101" FT /controlled_curation="term=UPF0041; date=19700101" FT /controlled_curation="term=human BRP44L ortholog; FT date=20080428" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT intron 200132..200171 FT /note="confirmed" FT /gene="SPCC1235.11" FT misc_feature 200277..200282 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT intron 200277..200364 FT /colour=2 FT /note="confirmed intron" FT /gene="SPCC1235.11" FT misc_feature 200353..200364 FT /colour=6 FT /note="ctaataagatag, splice branch and acceptor" FT misc_feature 200460..200465 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT intron 200460..200642 FT /colour=2 FT /note="confirmed intron" FT /gene="SPCC1235.11" FT misc_feature 200630..200642 FT /colour=6 FT /note="ttaatctccttag, splice branch and acceptor" FT misc_feature 200684..200689 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT intron 200684..200749 FT /colour=2 FT /note="confirmed intron" FT /gene="SPCC1235.11" FT misc_feature 200735..200749 FT /colour=6 FT /note="ctaactagcgtttag, splice branch and acceptor" FT misc_feature 200845..200850 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 200880..200899 FT /colour=6 FT /note="ctaacgacttatttaattag, splice branch and acceptor" FT CDS complement(201772..202707) FT /GO="aspect=P; term=sporulation (sensu Fungi); FT GOid=GO:0030437; evidence=IMP; db_xref=PMID:16393567; FT date=20051007" FT /colour=2 FT /controlled_curation="term=no apparent orthologs; FT date=19700101" FT /controlled_curation="term=meiotic expression upregulated; FT db_xref=PMID:16303567; date=20080908" FT /fasta_file="fasta/c1235.tab.seq.00075.out" FT /primary_name="mug146" FT /product="meiotically upregulated gene Mug46" FT /systematic_id="SPCC1235.12c" FT /gene="mug146" FT /gene="SPCC1235.12c" FT CDS 204733..206340 FT /GO="aspect=C; term=plasma membrane; GOid=GO:0005886; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001136; FT date=20041104" FT /colour=2 FT /controlled_curation="term=conserved family; FT date=20070427" FT /controlled_curation="term=meiotic expression upregulated; FT date=19700101" FT /controlled_curation="term=similar to S. pombe GHT1 and FT GHT2 and GHT4 and GHT5 and GHT3 and SPCC548.06C and FT SPBC1348.14C; date=19700101" FT /controlled_curation="term=tandem duplication; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YHR094C and YMR011W and YHR092C and YHR096C and YDR343C FT and YDR342C and YJL214W and YJL219W and YOL156W and FT YEL069C and YNL318C and YDL245C and YJR158W and YNR072W FT and YLR081W and YDR536W and YGR289C; date=19700101" FT /fasta_file="fasta/c1235.tab.seq.00076.out" FT /primary_name="ght6" FT /product="hexose transporter Ght6 (PMID 10735857)" FT /synonym="meu12" FT /systematic_id="SPCC1235.13" FT /gene="ght6" FT /gene="meu12" FT /gene="SPCC1235.13" FT 3'UTR 206341..206717 FT /note="mRNA from AB054532" FT /gene="ght6" FT /gene="meu12" FT /gene="SPCC1235.13" FT misc_feature 206718..212159 FT /note="low complexity gene free region" FT misc_feature 208666..210243 FT /db_xref="PMID:18488015" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /controlled_curation="term=transcription in low-complexity FT region; date=20071008" FT /controlled_curation="term=low complexity; date=20071008" FT /note="WARNING:this transcription could be on either FT strand" FT /note="SPNG2068" FT 5'UTR 212160..212312 FT /note="mRNA from AF017180" FT /gene="ght5" FT /gene="SPCC1235.14" FT CDS 212313..213953 FT /GO="aspect=C; term=integral to plasma membrane; FT GOid=GO:0005887; evidence=TAS; db_xref=PMID:10735857; FT date=20050124" FT /GO="aspect=F; term=hexose transporter activity; FT GOid=GO:0015149; evidence=TAS; db_xref=PMID:10735857; FT date=20050124" FT /GO="aspect=P; term=monosaccharide transport; FT GOid=GO:0015749; evidence=TAS; db_xref=PMID:10735857; FT date=20050124" FT /colour=2 FT /controlled_curation="term=conserved family; FT date=20070427" FT /controlled_curation="term=similar to S. pombe GHT1 and FT GHT2 and GHT4 and GHT3 and GHT6 and SPCC548.06C and FT SPBC1348.14C; date=19700101" FT /controlled_curation="term=tandem duplication; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YHR094C and YMR011W and YHR092C and YHR096C and YDR343C FT and YDR342C and YJL214W and YJL219W and YOL156W and FT YEL069C and YNL318C and YDL245C and YJR158W and YNR072W FT and YLR081W and YDR536W and YGR289C; date=19700101" FT /fasta_file="fasta/c1235.tab.seq.00077.out" FT /primary_name="ght5" FT /product="hexose transporter Ght5 (PMID 10735857)" FT /systematic_id="SPCC1235.14" FT /gene="ght5" FT /gene="SPCC1235.14" FT 3'UTR 213954..214376 FT /note="mRNA from SPD179" FT /gene="ght5" FT /gene="SPCC1235.14" FT CDS join(215424..215600,215850..216078,216187..216498,216591..216910) FT /EC_number="2.3.1.20" FT /GO="aspect=F; term=diacylglycerol O-acyltransferase FT activity; GOid=GO:0004144; evidence=IDA; FT db_xref=PMID:12963726; date=20030911" FT /GO="aspect=P; term=triacylglycerol biosynthesis; FT GOid=GO:0019432; evidence=IDA; db_xref=PMID:12963726; FT date=20030911" FT /GO="aspect=P; term=diacylglycerol metabolism; FT GOid=GO:0046339; evidence=IC; db_xref=PMID:12963726; FT from=GO:0004144; date=20030911" FT /GO="aspect=P; term=sequestering of lipid; FT GOid=GO:0019915; evidence=IC; from=GO:0004144; FT db_xref=PMID:12963726; date=20030911" FT /colour=2 FT /fasta_file="fasta/c1235.tab.seq.00078.out" FT /fasta_file="fasta/c548.tab.seq.00002.out" FT /note="non consensus intron fixed 19. Nov. 2003 pers. FT comm. Jan Dungan" FT /primary_name="dga1" FT /product="diacylglycerol O-acyltransferase (PMID FT 12963726)" FT /synonym="SPCC548.01" FT /systematic_id="SPCC1235.15" FT /gene="dga1" FT /gene="SPCC1235.15" FT /gene="SPCC548.01" FT /controlled_curation="term=1 predicted transmembrane FT helix; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YOR245C; date=19700101" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070719" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature 215601..215606 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 215830..215849 FT /colour=6 FT /note="ctaatccttcattcctttag, splice branch and acceptor" FT misc_feature 216079..216084 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 216169..216186 FT /colour=6 FT /note="ctaaccttatgctattag, splice branch and acceptor" FT misc_feature 216363..216463 FT /note="nominal overlap with SPCC1235 AL031764 S.pombe FT chromosome III" FT repeat_region complement(218324..220403) FT /note="wtf element" FT LTR complement(218342..218642) FT /note="Tf1-type LTR" FT CDS complement(join(219185..219261,219294..219368,219409..219684,219734..219979,220148..220283)) FT /colour=13 FT /controlled_curation="term=wtf element; FT db_xref=PMID:12952871; date=20070223" FT /fasta_file="fasta/c548.tab.seq.05383.out" FT /gene="wtf3" FT /gene="SPCC548.02c" FT /obsolete_name="wtf11-pseudo" FT /primary_name="wtf3" FT /product="wtf element Wtf3" FT /pseudo FT /synonym="meu9" FT /synonym="SPCC548.02" FT /systematic_id="SPCC548.02c" FT misc_feature complement(219262..219275) FT /colour=6 FT /note="ctaattatttttag, splice branch and acceptor" FT misc_feature complement(219288..219293) FT /colour=6 FT /note="gtactt, splice donor sequence" FT misc_feature complement(219369..219380) FT /colour=6 FT /note="ctgacaacatag, splice branch and acceptor" FT misc_feature complement(219403..219408) FT /colour=6 FT /note="gtttgt, splice donor sequence" FT misc_feature complement(219685..219696) FT /colour=6 FT /note="ctaactcattag, splice branch and acceptor" FT misc_feature complement(219728..219733) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature complement(219980..219992) FT /colour=6 FT /note="ttaatttaaacag, splice branch and acceptor" FT misc_feature complement(220142..220147) FT /colour=6 FT /note="gtaaga, splice donor sequence" FT repeat_region complement(220853..223256) FT /note="wtf element" FT CDS complement(join(221199..221335,221395..221457,221498..221689,221726..222016,222065..222337,222566..222701)) FT /colour=13 FT /controlled_curation="term=wtf element; FT db_xref=PMID:12952871; date=20070223" FT /fasta_file="fasta/c548.tab.seq.00036.out" FT /gene="wtf4" FT /gene="SPCC548.03c" FT /obsolete_name="wtf13" FT /primary_name="wtf4" FT /product="wtf element Wtf4, pseudo" FT /pseudo FT /synonym="SPCC548.03" FT /systematic_id="SPCC548.03c" FT misc_feature complement(221336..221357) FT /colour=6 FT /note="cttacccgactaggaggtttag, splice branch and acceptor" FT misc_feature complement(221389..221394) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature complement(221458..221470) FT /colour=6 FT /note="ctaaccataccag, splice branch and acceptor" FT intron complement(221458..221497) FT /colour=2 FT /note="confirmed by mRNA" FT misc_feature complement(221492..221497) FT /colour=6 FT /note="gttcgt, splice donor sequence" FT misc_feature complement(221690..221700) FT /colour=6 FT /note="ctaacatacag, splice branch and acceptor" FT intron complement(221690..221725) FT /colour=2 FT /note="confirmed by mRNA" FT misc_feature complement(221720..221725) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature complement(222017..222028) FT /colour=6 FT /note="ctaactcattag, splice branch and acceptor" FT misc_feature complement(222059..222064) FT /colour=6 FT /note="gtaagc, splice donor sequence" FT misc_feature complement(222338..222350) FT /colour=6 FT /note="ttaatgctttcag, splice branch and acceptor" FT misc_feature complement(222560..222565) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT LTR complement(222987..223246) FT /note="Tf2-type LTR" FT CDS join(223385..223407,223451..223603,223687..223852) FT /GO="aspect=F; term=protein tag; GOid=GO:0031386; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001270; FT date=20051107" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001270; FT date=20051107" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001270; FT date=20051107" FT /GO="aspect=P; term=protein urmylation; GOid=GO:0032447; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001270; FT date=20070208" FT /colour=7 FT /fasta_file="fasta/c548.tab.seq.00037.out" FT /product="ubiquitin family protein Urm1 (predicted)" FT /systematic_id="SPCC548.04" FT /gene="SPCC548.04" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=ubiquitin family protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YIL008W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 223408..223413 FT /colour=6 FT /note="gtaggt, splice donor sequence" FT misc_feature 223434..223450 FT /colour=6 FT /note="gtaacctattattgtag, splice branch and acceptor" FT misc_feature 223604..223609 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 223670..223686 FT /colour=6 FT /note="ctaacacttccctgcag, splice branch and acceptor" FT CDS complement(join(224087..225172,225323..225643)) FT /GO="aspect=F; term=ubiquitin-protein ligase activity; FT GOid=GO:0004842; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00097; date=20060726" FT /GO="aspect=P; term=protein ubiquitination; FT GOid=GO:0016567; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00097; date=20060726" FT /GO="aspect=F; term=zinc ion binding; GOid=GO:0008270; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00097; FT date=20060726" FT /GO="aspect=P; term=RNA elongation from RNA polymerase II FT promoter; GOid=GO:0006368; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000005415; date=20060726" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005415; FT date=20060726" FT /colour=7 FT /product="ubiquitin-protein ligase E3 (predicted)" FT /systematic_id="SPCC548.05c" FT /fasta_file="fasta/c548.tab.seq.00003.out" FT /fasta_file="%uniprot:fasta/chromosome3.contig.seq.04388.out" FT /gene="SPCC548.05c" FT /controlled_curation="term=ubiquitin-protein ligase E3; FT date=20060726" FT /controlled_curation="term=zinc finger protein; FT date=20060726" FT /controlled_curation="term=zf-C3HC4 type (RING finger); FT date=20060726" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YOL054W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature complement(225173..225183) FT /colour=6 FT /note="ctaataaatag, splice branch and acceptor" FT misc_feature complement(225317..225322) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT 5'UTR complement(225644..225756) FT /note="mRNA from spc10274" FT /gene="SPCC548.05c" FT misc_RNA 226130..226215 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /controlled_curation="term=uncertain; date=20071010" FT /systematic_id="SPNCRNA.460" FT /note="WARNING:this transcript could be on either strand" FT /synonym="SPNG2075" FT /product="non-coding RNA (predicted)" FT 3'UTR complement(226336..226756) FT /note="mRNA from spc05276" FT /gene="ght8" FT /gene="SPCC548.06c" FT CDS complement(226757..228400) FT /GO="aspect=C; term=integral to plasma membrane; FT GOid=GO:0005887; evidence=ISS; db_xref=PMID:17072883; FT with=GeneDB_Spombe:SPCC548.07c; date=20050124" FT /GO="aspect=F; term=hexose transporter activity; FT GOid=GO:0015149; evidence=ISS; db_xref=PMID:17072883; FT with=GeneDB_Spombe:SPCC548.07c; date=20050124" FT /GO="aspect=P; term=monosaccharide transport; FT GOid=GO:0015749; evidence=ISS; db_xref=PMID:17072883; FT with=GeneDB_Spombe:SPCC548.07c; date=20050124" FT /colour=7 FT /controlled_curation="term=conserved family; FT date=20070427" FT /controlled_curation="term=similar to S. pombe GHT1 and FT GHT2 and GHT4 and GHT5 and GHT6 and GHT3 and SPBC1348.14C; FT date=19700101" FT /controlled_curation="term=tandem duplication; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YHR094C and YMR011W and YHR092C and YHR096C and YDR343C FT and YDR342C and YJL214W and YJL219W and YOL156W and FT YEL069C and YNL318C and YDL245C and YJR158W and YNR072W FT and YLR081W and YDR536W and YGR289C; date=19700101" FT /fasta_file="fasta/c548.tab.seq.00039.out" FT /primary_name="ght8" FT /product="hexose transporter Ght8 (predicted)" FT /systematic_id="SPCC548.06c" FT /gene="ght8" FT /gene="SPCC548.06c" FT misc_feature 228401..232833 FT /note="gene free region" FT CDS complement(232834..234507) FT /GO="aspect=C; term=integral to plasma membrane; FT GOid=GO:0005887; evidence=TAS; db_xref=PMID:10735857; FT date=20050124" FT /GO="aspect=F; term=hexose transporter activity; FT GOid=GO:0015149; evidence=TAS; db_xref=PMID:10735857; FT date=20050124" FT /GO="aspect=P; term=monosaccharide transport; FT GOid=GO:0015749; evidence=TAS; db_xref=PMID:10735857; FT date=20050124" FT /colour=2 FT /controlled_curation="term=conserved family; FT date=20070427" FT /controlled_curation="term=similar to S. pombe GHT3 and FT GHT2 and GHT4 and GHT5 and GHT6 and SPCC548.06C and FT SPBC1348.14C; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YHR094C and YMR011W and YHR092C and YHR096C and YDR343C FT and YDR342C and YJL214W and YJL219W and YOL156W and FT YEL069C and YNL318C and YDL245C and YJR158W and YNR072W FT and YLR081W and YDR536W and YGR289C; date=19700101" FT /controlled_curation="term=conserved family; FT date=20070723" FT /fasta_file="fasta/c548.tab.seq.00040.out" FT /primary_name="ght1" FT /product="hexose transporter Ght1 (PMID 10735857)" FT /systematic_id="SPCC548.07c" FT /gene="ght1" FT /gene="SPCC548.07c" FT misc_feature 234853..234953 FT /note="nominal overlap with SPCC1529 AL132664 S.pombe FT chromosome III cosmid c1529." FT misc_feature 234853..237553 FT /note="low-complexity gene-free region" FT CDS join(237554..237923,237975..238080,238139..238533,238588..239092,239151..239250) FT /GO="aspect=P; term=transport; GOid=GO:0006810; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF07690; FT date=20060109" FT /GO="aspect=F; term=carrier activity; GOid=GO:0022857; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF07690; FT date=20060109" FT /GO="aspect=C; term=plasma membrane; GOid=GO:0005886; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF07690; FT date=20060109" FT /colour=7 FT /controlled_curation="term=membrane transporter; FT date=19700101" FT /controlled_curation="term=MFS family membrane FT transporter; qualifier=predicted; date=19700101" FT /controlled_curation="term=10 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=similar to S. pombe SPBC1348.05 FT and SPAPB1A11.01 and SPBPB2B2.16c and SPAC750.02c; FT date=19700101" FT /controlled_curation="term=orthologs cannot be FT distinguished; date=19700101" FT /controlled_curation="term=conserved family; FT date=20070913" FT /product="membrane transporter" FT /synonym="SPCC794.14" FT /systematic_id="SPCC1529.01" FT /fasta_file="fasta/c1529.tab.seq.00003.out" FT /fasta_file="fasta/c750.tab.seq.00004.out" FT /fasta_file="fasta/c794.tab.seq.00032.out" FT /fasta_file="%uniprot:fasta/chromosome3.contig.seq.04133.out" FT /note="coordinates updated 12/Oct?07, pers. comm. Brian FT Wilhelm" FT /gene="SPCC1529.01" FT /gene="SPCC794.14" FT misc_feature 237924..237929 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 237958..237974 FT /colour=6 FT /note="ctaaccttttgtcaaag, splice branch and acceptor" FT misc_feature 238081..238086 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 238119..238138 FT /colour=6 FT /note="ctaacgttttctttattcag, splice branch and acceptor" FT misc_feature 238534..238539 FT /colour=6 FT /note="gtaggt, splice donor sequence" FT misc_feature 238575..238587 FT /colour=6 FT /note="cttaccgttatag, splice branch and acceptor" FT misc_feature 239002..239102 FT /note="nominal overlap with cosmid SPCC1529 and cosmid FT SPCC794" FT intron 239093..239150 FT /note="confirmed intron, transcriptome data" FT /gene="SPCC1529.01" FT /gene="SPCC794.14" FT 3'UTR 239251..239381 FT /db_xref="PMID:18488015" FT /note="UTR predicted from transcriptome data SPNG2085" FT /gene="SPCC1529.01" FT /gene="SPCC794.14" FT CDS complement(239781..241208) FT /EC_number="1.1.1.49" FT /GO="aspect=P; term=pentose-phosphate shunt, oxidative FT branch; qualifier=first_step; GOid=GO:0009051; FT evidence=IC; db_xref=PMID:17072883; from=GO:0004345; FT date=20030708" FT /GO="aspect=P; term=glucose 6-phosphate utilization; FT GOid=GO:0006010; evidence=IC; db_xref=PMID:17072883; FT from=GO:0004345; date=20030708" FT /GO="aspect=F; term=glucose-6-phosphate 1-dehydrogenase FT activity; GOid=GO:0004345; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P11412; date=20030708" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P11412; FT date=20030708" FT /colour=7 FT /fasta_file="fasta/c794.tab.seq.00033.out" FT /product="glucose-6-phosphate 1-dehydrogenase (predicted)" FT /db_xref="PATH:MAP00030;" FT /db_xref="PATH:MAP00480;" FT /systematic_id="SPCC794.01c" FT /gene="SPCC794.01c" FT /controlled_curation="term=disease associated, chronic FT non-spherocytic hemolytic anemia; date=20061122" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070425" FT /controlled_curation="term=similar to S. cerevisiae FT YNL241C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT repeat_region 243546..245409 FT /note="wtf element" FT CDS join(243855..243993,244160..244405,244455..244760,244802..244843,244893..244969) FT /controlled_curation="term=wtf element; FT db_xref=PMID:12952871; date=20070223" FT /fasta_file="fasta/c794.tab.seq.00034.out" FT /obsolete_name="wtf4" FT /primary_name="wtf5" FT /product="wtf element Wtf5" FT /systematic_id="SPCC794.02" FT /gene="SPCC794.02" FT misc_feature 243994..243999 FT /colour=6 FT /note="gtaaga, splice donor sequence" FT misc_feature 244147..244159 FT /colour=6 FT /note="ttaatttaaacag, splice branch and acceptor" FT misc_feature 244406..244411 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 244443..244454 FT /colour=6 FT /note="ctaattcattag, splice branch and acceptor" FT misc_feature 244761..244766 FT /colour=6 FT /note="gtttgt, splice donor sequence" FT misc_feature 244790..244801 FT /colour=6 FT /note="ttaacaatacag, splice branch and acceptor" FT misc_feature 244844..244849 FT /colour=6 FT /note="gtaaat, splice donor sequence" FT misc_feature 244879..244892 FT /colour=6 FT /note="ctaattatcattag, splice branch and acceptor" FT CDS 245964..247628 FT /colour=7 FT /controlled_curation="term=conserved family (fungal and FT plant); date=20070428" FT /controlled_curation="term=amino acid permease family; FT date=19700101" FT /controlled_curation="term=12 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=similar to S. pombe FT SPBC15C4.04C and SPAPB24D3.02C and SPCC74.04 and FT SPAC1039.01 and SPAC11D3.08C and SPCC584.13 and SPAC9.10 FT and SPCC794.03; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YKL174C and YGL077C and YDL210W; date=19700101" FT /fasta_file="fasta/c794.tab.seq.00035.out" FT /product="amino acid permease, unknown 13" FT /systematic_id="SPCC794.03" FT /gene="SPCC794.03" FT /GO="aspect=P; term=transmembrane transport; FT GOid=GO:0055085; evidence=ISS; db_xref=GOC:unpublished; FT with=InterPro:IPR002293; date=20080625" FT /GO="aspect=F; term=amino acid transmembrane transporter FT activity; GOid=GO:0015171; evidence=ISS; FT db_xref=GOC:unpublished; with=InterPro:IPR002293; FT date=20080625" FT /GO="aspect=C; term=integral to membrane; GOid=GO:0016021; FT evidence=ISS; db_xref=GOC:unpublished; FT with=InterPro:IPR002293; date=20080625" FT CDS complement(248551..250194) FT /GO="aspect=P; term=transport; GOid=GO:0006810; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF07690; FT date=20060109" FT /GO="aspect=F; term=carrier activity; GOid=GO:0022857; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF07690; FT date=20060109" FT /GO="aspect=C; term=plasma membrane; GOid=GO:0005886; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF07690; FT date=20060109" FT /colour=7 FT /fasta_file="fasta/c794.tab.seq.00036.out" FT /product="membrane transporter" FT /systematic_id="SPCC794.04c" FT /gene="SPCC794.04c" FT /controlled_curation="term=membrane transporter; FT date=19700101" FT /controlled_curation="term=MFS family membrane FT transporter; date=19700101" FT /controlled_curation="term=similar to S. pombe SPAC11D3.05 FT and SPBC530.02; date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=conserved family, broad species FT distribution; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT misc_feature 250194..254349 FT /note="low complexity gene-free region" FT LTR complement(254350..254629) FT /note="Tf2-type LTR" FT misc_feature complement(254621..256950) FT /fasta_file="fasta/c794.tab.seq.04674.out" FT /note="degraded Tf2 retrotransposable element" FT /note="SPCC794.05c" FT /systematic_id="Tf-fragment4" FT LTR complement(257183..257531) FT /note="Tf2-type LTR" FT CDS 260437..261732 FT /GO="aspect=F; term=transmembrane transporter activity; FT GOid=GO:0022857; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF03595; date=20060925" FT /GO="aspect=P; term=transport; GOid=GO:0006810; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF0395; FT date=20070821" FT /colour=7 FT /controlled_curation="term=conserved family (bacterial FT fungal plant); date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /fasta_file="fasta/c794.tab.seq.00037.out" FT /product="TDT malic acid transporter" FT /systematic_id="SPCC794.06" FT /gene="SPCC794.06" FT CDS join(262811..262884,262971..263041,263093..264399) FT /EC_number="2.3.1.12" FT /GO="aspect=P; term=acetyl-CoA biosynthesis from pyruvate; FT GOid=GO:0006086; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P12695; date=20030609" FT /GO="aspect=F; term=dihydrolipoyllysine-residue FT acetyltransferase activity; GOid=GO:0004742; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P12695; date=20030609" FT /GO="aspect=C; term=pyruvate dehydrogenase complex (sensu FT Eukaryota); GOid=GO:0005967; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P12695; date=20030609" FT /colour=7 FT /fasta_file="fasta/c794.tab.seq.00038.out" FT /product="dihydrolipoamide S-acetyltransferase E2 FT (predicted)" FT /db_xref="PATH:MAP00010;" FT /db_xref="PATH:MAP00620;" FT /systematic_id="SPCC794.07" FT /gene="SPCC794.07" FT /controlled_curation="term=disease associated lactic FT acidosis (maple syrup urine disease, type II); FT date=20070507" FT /controlled_curation="term=similar to S. cerevisiae FT YNL071W; date=19700101" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070319" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 262885..262890 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 262956..262970 FT /colour=6 FT /note="ctaatcagtgtgcag, splice branch and acceptor" FT misc_feature 263042..263047 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 263077..263092 FT /colour=6 FT /note="ctaacagttaccatag, splice branch and acceptor" FT CDS join(265445..265644,265685..267881) FT /GO="aspect=C; term=mitochondrion; GOid=GO:0005739; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:Q03653; FT date=20040906" FT /colour=10 FT /fasta_file="fasta/c794.tab.seq.00039.out" FT /product="HEAT repeat protein, unknown biological role" FT /systematic_id="SPCC794.08" FT /gene="SPCC794.08" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=HEAT repeat; qualifier=inferred FT from context; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YMR212C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 265645..265650 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 265671..265684 FT /colour=6 FT /note="ctaaatgtttttag, splice branch and acceptor" FT 3'UTR complement(268038..268096) FT /db_xref="EMBL:D82571" FT /gene="SPCC794.09c" FT /gene="ef1a-a" FT CDS complement(268097..269479) FT /GO="aspect=F; term=translation elongation factor FT activity; GOid=GO:0003746; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000006284; date=20050302" FT /GO="aspect=P; term=translational elongation; FT GOid=GO:0006414; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000006284; date=20050302" FT /GO="aspect=C; term=eukaryotic translation elongation FT factor 1 complex; GOid=GO:0005853; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000006284; date=20050302" FT /colour=2 FT /fasta_file="fasta/c794.tab.seq.00040.out" FT /obsolete_name="tef1-e" FT /obsolete_name="ef1a-e" FT /obsolete_name="tef1-e" FT /obsolete_name="ef1a-e" FT /primary_name="ef1a-a" FT /product="translation elongation factor EF-1 alpha Ef1a-a" FT /systematic_id="SPCC794.09c" FT /gene="SPCC794.09c" FT /gene="ef1a-a" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070425" FT /controlled_curation="term=similar to S. cerevisiae FT YPR080W and YBR118W; date=19700101" FT /controlled_curation="term=similar to S. pombe SPBC839.15C FT and SPAC23A1.10; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS 270966..272465 FT /EC_number="2.7.7.9" FT /GO="aspect=F; term=UTP:glucose-1-phosphate FT uridylyltransferase activity; GOid=GO:0003983; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001518; FT date=20050302" FT /GO="aspect=P; term=UDP-glucose metabolism; FT GOid=GO:0006011; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001518; date=20050302" FT /GO="aspect=P; term=protein amino acid glycosylation; FT GOid=GO:0006486; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001518; date=20050302" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001518; FT date=20050302" FT /colour=7 FT /fasta_file="fasta/c794.tab.seq.00041.out" FT /product="UTP-glucose-1-phosphate uridylyltransferase FT (predicted)" FT /systematic_id="SPCC794.10" FT /gene="SPCC794.10" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070428" FT /controlled_curation="term=similar to S. pombe SPCC1322.04 FT (paralog); date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YKL035W and YHL012W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT 3'UTR complement(273015..273166) FT /db_xref="EMBL:D89162" FT /systematic_id="SPCC794.11c" FT /gene="SPCC794.11c" FT CDS complement(273167..274597) FT /GO="aspect=C; term=actin cortical patch; GOid=GO:0030479; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000003886; FT date=20050623" FT /GO="aspect=C; term=clathrin vesicle coat; FT GOid=GO:0030125; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000003886; date=20050623" FT /GO="aspect=F; term=phosphatidylinositol-4,5-bisphosphate FT binding; GOid=GO:0005546; evidence=ISS; FT db_xref=PMID:17072883; with=Pfam:PF01417; date=20050123" FT /GO="aspect=P; term=Golgi to endosome transport; FT GOid=GO:0006895; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000003886; date=20050623" FT /GO="aspect=P; term=actin cortical patch assembly; FT GOid=GO:0000147; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000003886; date=20050623" FT /GO="aspect=P; term=actin filament organization; FT GOid=GO:0007015; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000003886; date=20050623" FT /GO="aspect=P; term=endocytosis; GOid=GO:0006897; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000003886; FT date=20050623" FT /colour=7 FT /fasta_file="fasta/c794.tab.seq.00042.out" FT /product="ENTH/VHS domain protein Ent3" FT /systematic_id="SPCC794.11c" FT /gene="SPCC794.11c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=ENTH/VHS domain protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YJR125C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(275514..277211) FT /EC_number="1.1.1.38" FT /GO="aspect=C; term=mitochondrion; GOid=GO:0005739; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P36013; FT date=20040914" FT /GO="aspect=F; term=malate dehydrogenase FT (oxaloacetate-decarboxylating) activity; GOid=GO:0016619; FT evidence=IMP; db_xref=PMID:9809416; date=20040914" FT /GO="aspect=P; term=malate metabolic process; FT GOid=GO:0006108; evidence=IMP; db_xref=PMID:9809416; FT date=20040914" FT /GO="aspect=P; term=pyruvate metabolism; GOid=GO:0006090; FT evidence=IMP; db_xref=PMID:9809416; date=20040914" FT /colour=2 FT /fasta_file="fasta/c794.tab.seq.00001.out" FT /primary_name="mae2" FT /product="malic enzyme" FT /systematic_id="SPCC794.12c" FT /gene="mae2" FT /gene="SPCC794.12c" FT /controlled_curation="term=conserved family, broad species FT distribution; date=20070422" FT /controlled_curation="term=malate dehydrogenase FT (oxaloacetate decarboxylating); date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YKL029C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT CDS join(278906..278983,279027..279209) FT /colour=8 FT /fasta_file="fasta/c794.tab.seq.00003.out" FT /note="below 100 amino acid size threshold" FT /product="sequence orphan" FT /systematic_id="SPCC794.15" FT /gene="SPCC794.15" FT /controlled_curation="term=sequence orphan; date=19700101" FT /controlled_curation="term=sequence orphan, FT uncharacterised; date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT CDS 279434..280999 FT /colour=10 FT /fasta_file="fasta/c794.tab.seq.00045.out" FT /fasta_file="fasta/c553.tab.seq.00004.out" FT /product="conserved fungal protein" FT /synonym="SPCC794.13" FT /systematic_id="SPCC553.12c" FT /gene="SPCC553.12c" FT /gene="SPCC794.13" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=10 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_feature 279735..279898 FT /note="nominal overlap with cosmid SPCC794, EM:AL023595 S. FT pombe chromosome 3" FT misc_feature complement(279735..279898) FT /note="nominal overlap with cosmid SPCC553, EM:AL023704 S. FT pombe chromosome 3" FT CDS join(281902..281936,282056..282137,282204..282410) FT /GO="aspect=P; term=transcription initiation from RNA FT polymerase II promoter; GOid=GO:0006367; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000001541; date=20050706" FT /GO="aspect=C; term=transcription factor TFIIA complex; FT GOid=GO:0005672; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001541; date=20050706" FT /GO="aspect=F; term=general RNA polymerase II FT transcription factor activity; GOid=GO:0016251; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001541; FT date=20050706" FT /colour=7 FT /fasta_file="fasta/c553.tab.seq.00030.out" FT /product="transcription factor TFIIA complex small subunit FT (predicted)" FT /systematic_id="SPCC553.11c" FT /gene="SPCC553.11c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YKL058W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 281937..281942 FT /colour=6 FT /note="gtactt, splice donor sequence" FT misc_feature 282041..282055 FT /colour=6 FT /note="ctgacacatttgtag, splice branch and acceptor" FT misc_feature 282138..282143 FT /colour=6 FT /note="gtacgt, splice donor sequence" FT misc_feature 282182..282203 FT /colour=6 FT /note="ctaatctcacaatttgatatag, splice branch and acceptor" FT 3'UTR complement(283181..283421) FT /note="mRNA from AU010226" FT /gene="SPCC553.10" FT CDS complement(283422..284471) FT /GO="aspect=C; term=cell surface; GOid=GO:0009986; FT evidence=TAS; db_xref=PMID:12845604; date=20050706" FT /colour=10 FT /fasta_file="fasta/c553.tab.seq.00031.out" FT /product="conserved fungal protein" FT /systematic_id="SPCC553.10" FT /gene="SPCC553.10" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=glycoprotein; FT qualifier=predicted; date=19700101" FT /controlled_curation="term=serine-rich protein; FT date=19700101" FT /controlled_curation="term=similar to N. crassa ncu05667; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=GPI anchored protein; FT qualifier=pers. comm. Birgit Eisenhaber|predicted; FT db_xref=PMID:12845604; date=19700101" FT /controlled_curation="term=predicted N-terminal signal FT sequence; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT LTR complement(286728..287053) FT /colour=4 FT /note="degraded tf2-type LTR" FT CDS join(287640..287905,287947..288925,288968..289276,289316..289486) FT /GO="aspect=C; term=alpha DNA polymerase:primase complex; FT GOid=GO:0005658; evidence=TAS; db_xref=PMID:15314153; FT date=20041012" FT /GO="aspect=C; term=nuclear chromatin; GOid=GO:0000790; FT evidence=IC; db_xref=PMID:17072883; from=GO:0005658; FT date=20041012" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:11027257; FT with=GeneDB_Spombe:SPBC17D11.06; date=20041012" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:11027257; FT with=GeneDB_Spombe:SPBC29A10.15; date=20041012" FT /GO="aspect=F; term=protein binding; FT qualifier=throughout_cell_cycle; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:11027257; FT with=GeneDB_Spombe:SPBC685.09; date=20041012" FT /GO="aspect=P; term=DNA replication initiation; FT GOid=GO:0006270; evidence=NAS; db_xref=PMID:17072883; FT date=20051004" FT /GO="aspect=P; term=DNA replication, synthesis of RNA FT primer; GOid=GO:0006269; evidence=IC; FT db_xref=PMID:17072883; from=GO:0005658; date=20041012" FT /colour=2 FT /fasta_file="fasta/c553.tab.seq.00032.out" FT /note="PMID:11027257 is pending GO curation" FT /note="PMID:15314153 is pending GO curation" FT /primary_name="spb70" FT /product="DNA polymerase alpha B-subunit" FT /synonym="pol12" FT /systematic_id="SPCC553.09c" FT /gene="spb70" FT /gene="SPCC553.09c" FT /gene="pol12" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=essential; FT db_xref=PMID:15314153; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YBL035C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 287906..287911 FT /colour=6 FT /note="gtgcgt, splice donor sequence" FT misc_feature 287932..287946 FT /colour=6 FT /note="ctaacaaatatctag, splice branch and acceptor" FT misc_feature 288926..288931 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 288953..288967 FT /colour=6 FT /note="ttgaccaatccatag, splice branch and acceptor" FT misc_feature 289277..289282 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT intron 289277..289315 FT /colour=2 FT /note="confirmed intron" FT /gene="spb70" FT /gene="SPCC553.09c" FT /gene="pol12" FT misc_feature 289304..289315 FT /colour=6 FT /note="ctaatgttatag, splice branch and acceptor" FT 3'UTR 289487..289704 FT /note="mRNA from AU013470" FT /gene="spb70" FT /gene="SPCC553.09c" FT /gene="pol12" FT CDS join(289912..290007,290063..292215,292261..293014) FT /GO="aspect=P; term=ribosome biogenesis and assembly; FT GOid=GO:0042254; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000005107; date=20040930" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005107; FT date=20050706" FT /GO="aspect=F; term=GTPase activity; GOid=GO:0003924; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005107; FT date=20050706" FT /GO="aspect=F; term=GTP binding; GOid=GO:0005525; FT evidence=ISS; db_xref=PMID:17072883; FT with=InterPro:IPR000795; date=20051021" FT /colour=7 FT /fasta_file="fasta/c553.tab.seq.00033.out" FT /product="GTPase Ria1 (predicted)" FT /systematic_id="SPCC553.08c" FT /gene="SPCC553.08c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YNL163C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 290008..290013 FT /colour=6 FT /note="gtatga, splice donor sequence" FT misc_feature 290046..290062 FT /colour=6 FT /note="ctaatgattaattaaag, splice branch and acceptor" FT misc_feature 292216..292221 FT /colour=6 FT /note="gtaggt, splice donor sequence" FT misc_feature 292248..292260 FT /colour=6 FT /note="ctaacaatactag, splice branch and acceptor" FT CDS join(293444..293936,293976..294415,294462..294974,295021..295218) FT /EC_number="2.7.7.7" FT /GO="aspect=C; term=chromatin; GOid=GO:0000785; FT evidence=IDA; db_xref=PMID:12514100; date=20040907" FT /GO="aspect=F; term=DNA-directed DNA polymerase activity; FT GOid=GO:0003887; evidence=ISS; db_xref=PMID:17072883; FT with=InterPro:IPR001126; date=20040907" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:12514100; FT with=GeneDB_Spombe:SPAC1952.07; date=20040907" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:12514100; FT with=GeneDB_Spombe:SPAC20G4.04c; date=20040907" FT /GO="aspect=P; term=DNA repair; GOid=GO:0006281; FT evidence=ISS; db_xref=PMID:17072883; FT with=InterPro:IPR001126; date=20040907" FT /GO="aspect=P; term=response to DNA damage stimulus; FT GOid=GO:0006974; evidence=TAS; db_xref=PMID:12514100; FT date=20040907" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; FT with=UniProtKB:POLK_HUMAN; date=20051004" FT /colour=2 FT /fasta_file="fasta/c553.tab.seq.00003.out" FT /note="added missed C-terminal exon (pers. comm. Charly FT Chahwan)" FT /note="GO:0000785 is Rad17-dependent" FT /product="DinB translesion DNA repair polymerase" FT /systematic_id="SPCC553.07c" FT /primary_name="mug40" FT /gene="SPCC553.07c" FT /gene="mug40" FT /controlled_curation="term=Pol-kappa; date=19700101" FT /controlled_curation="term=PCNA binding motif; FT qualifier=pers. comm. Charly Chahwan; date=19700101" FT /controlled_curation="term=zinc finger protein; FT qualifier=pers. comm. Charly Chahwan; date=19700101" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=disease associated, cancer; FT date=19700101" FT /controlled_curation="term=meiotic expression upregulated; FT db_xref=PMID:16303567; date=20080908" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 293937..293942 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT intron 293937..293975 FT /note="confirmed, (pers. comm. Charley Chahwan)" FT /gene="SPCC553.07c" FT /gene="mug40" FT misc_feature 293961..293975 FT /colour=6 FT /note="ctaatgctgaataag, splice branch and acceptor" FT misc_feature 294416..294421 FT /colour=6 FT /note="gtaagc, splice donor sequence" FT intron 294416..294461 FT /note="confirmed, (pers. comm. Charley Chahwan)" FT /gene="SPCC553.07c" FT /gene="mug40" FT misc_feature 294450..294461 FT /colour=6 FT /note="ttaacattacag, splice branch and acceptor" FT intron 294975..295020 FT /note="confirmed, (pers. comm. Charley Chahwan)" FT /gene="SPCC553.07c" FT /gene="mug40" FT CDS complement(join(295482..295967,296068..296266,296357..296487)) FT /GO="aspect=C; term=oligosaccharyl transferase complex; FT GOid=GO:0008250; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000004757; date=20050414" FT /GO="aspect=P; term=protein amino acid N-linked FT glycosylation; GOid=GO:0006487; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000004757; date=20050414" FT /GO="aspect=F;term=dolichyl-diphosphooligosaccharide-protei FT nglycotransferase activity; qualifier=contributes_to; FT GOid=GO:0004579; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000004757; date=20070208" FT /colour=7 FT /fasta_file="fasta/chromosome3.contig.seq.02281.out" FT /product="oligosaccharyltransferase subunit" FT /systematic_id="SPCC553.06" FT /gene="SPCC553.06" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=predicted N-terminal signal FT sequence; date=19700101" FT /controlled_curation="term=2 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YMR149W; date=19700101" FT /controlled_curation="term=predicted from KOGS; FT date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(295968..295979) FT /colour=6 FT /note="ctaaccttatag, splice branch and acceptor" FT misc_feature complement(296062..296067) FT /colour=6 FT /note="gtacgc, splice donor sequence" FT misc_feature complement(296267..296287) FT /colour=6 FT /note="ctaactctcttatctctttag, splice branch and acceptor" FT misc_feature complement(296351..296356) FT /colour=6 FT /note="gtaggt, splice donor sequence" FT repeat_region complement(296699..298546) FT /note="wtf element" FT CDS complement(join(297140..297216,297266..297308,297384..297655,297705..297950,298119..298258)) FT /colour=13 FT /controlled_curation="term=wtf element; FT db_xref=PMID:12952871; date=20070223" FT /fasta_file="fasta/c553.tab.seq.04703.out" FT /gene="wtf6" FT /gene="SPCC553.05c" FT /obsolete_name="wtf2-pseudo" FT /primary_name="wtf6" FT /product="wtf element Wtf6, pseudo" FT /pseudo FT /synonym="SPCC553.05" FT /systematic_id="SPCC553.05c" FT LTR complement(298547..298890) FT /note="tf2 type LTR" FT LTR 298890..299217 FT /note="Tf2-type LTR" FT CDS complement(join(300340..302102,302158..302227)) FT /colour=7 FT /fasta_file="fasta/c553.tab.seq.00036.out" FT /primary_name="cyp9" FT /product="WD repeat containing cyclophilin family FT peptidyl-prolyl cis-trans isomerase Cyp9" FT /systematic_id="SPCC553.04" FT /GO="aspect=P; term=chromatin silencing; GOid=GO:0006342; FT evidence=ISS; db_xref=PMID:17704213; FT with=TAIR:At3g44600.1; date=20070822" FT /GO="aspect=C; term=nuclear chromatin; GOid=GO:0000790; FT evidence=ISS; db_xref=PMID:17704213; FT with=TAIR:At3g44600.1; date=20070822" FT /GO="aspect=F; term=histone binding; GOid=GO:0042393; FT evidence=ISS; db_xref=PMID:17704213; FT with=TAIR:At3g44600.1; date=20070822" FT /GO="aspect=P; term=regulation of histone methylation; FT GOid=GO:0031060; evidence=ISS; db_xref=PMID:17704213; FT with=TAIR:At3g44600.1; date=20070822" FT /GO="aspect=F; term=peptidyl-prolyl cis-trans isomerase FT activity; GOid=GO:0003755; evidence=ISS; FT db_xref=PMID:16134115; with=Pfam:PF00160; date=20070822" FT /gene="cyp9" FT /gene="SPCC553.04" FT /controlled_curation="term=cyclophilin; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=WD repeat protein; FT date=20070822" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(302103..302122) FT /note="ctgatgctttgtactattag, splice branch and acceptor" FT misc_feature complement(302152..302157) FT /note="gtaagt, splice donor sequence" FT CDS complement(join(302352..304934,304980..305210)) FT /GO="aspect=C; term=peroxisome; GOid=GO:0005777; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001680; FT date=20050706" FT /GO="aspect=F; term=ATP binding; GOid=GO:0005524; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00004; FT date=20051021" FT /GO="aspect=F; term=ATPase activity; GOid=GO:0016887; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001680; FT date=20050706" FT /GO="aspect=P; term=peroxisome organization and FT biogenesis; GOid=GO:0007031; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000001680; date=20050706" FT /colour=7 FT /fasta_file="fasta/c553.tab.seq.00001.out" FT /product="AAA family ATPase Pex1 (predicted)" FT /systematic_id="SPCC553.03" FT /primary_name="pex1" FT /gene="pex1" FT /gene="SPCC553.03" FT /controlled_curation="term=AAA family ATPase; FT date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YKL197C; date=19700101" FT /controlled_curation="term=disease associated, peroxisomal FT defects; date=20070627" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(304935..304946) FT /note="ctaatctcttag, splice branch and acceptor" FT misc_feature complement(304974..304979) FT /note="gtaaaa, splice donor sequence" FT CDS complement(join(305988..306194,306247..306574,306624..307035,307082..308091,308292..308408,308453..308481)) FT /EC_number="6.3.5.1" FT /EC_number="3.5.-.-" FT /GO="aspect=F; term=NAD+ synthase (glutamine-hydrolyzing) FT activity; GOid=GO:0003952; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000001116; date=20050706" FT /GO="aspect=P; term=NAD biosynthesis; GOid=GO:0009435; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001116; FT date=20050706" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001116; FT date=20050706" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001116; FT date=20050706" FT /GO="aspect=F; term=hydrolase activity, acting on FT carbon-nitrogen (but not peptide) bonds; GOid=GO:0016810; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00795; FT date=20051021" FT /GO="aspect=P; term=nitrogen compound metabolism; FT GOid=GO:0006807; evidence=IC; db_xref=PMID:17072883; FT from=GO:0016810; date=20051021" FT /GO="aspect=F; term=ATP binding; GOid=GO:0005524; FT evidence=ISS; db_xref=PMID:17072883; FT with=InterPro:IPR003694; date=20051021" FT /colour=7 FT /product="glutamine-dependent NAD(+) synthetase FT (predicted)" FT /systematic_id="SPCC553.02" FT /fasta_file="fasta/c553.tab.seq.00038.out" FT /fasta_file="%uniprot:fasta/chromosome3.contig.seq.04409.out" FT /gene="SPCC553.02" FT /controlled_curation="term=similar to S. cerevisiae FT YHR074W; date=19700101" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070319" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(306195..306207) FT /note="ctaactttataag, splice branch and acceptor" FT misc_feature complement(306241..306246) FT /note="gtaagt, splice donor sequence" FT misc_feature complement(306575..306590) FT /note="ctgacaaatttacaag, splice branch and acceptor" FT misc_feature complement(306618..306623) FT /note="gtatgc, splice donor sequence" FT misc_feature complement(307036..307056) FT /note="ctaattactgaccttcaatag, splice branch and acceptor" FT misc_feature complement(307076..307081) FT /note="gtaagt, splice donor sequence" FT misc_feature complement(308092..308107) FT /note="ttaacaaacgcattag, splice branch and acceptor" FT misc_feature complement(308286..308291) FT /note="gtatgt, splice donor sequence" FT misc_feature complement(308409..308421) FT /note="ctaacttctgtag, splice branch and acceptor" FT misc_feature complement(308447..308452) FT /note="gtatgc, splice donor sequence" FT CDS 310539..312686 FT /GO="aspect=P; term=meiotic chromosome segregation; FT GOid=GO:0045132; evidence=IMP; db_xref=PMID:16169489; FT date=20060203" FT /GO="aspect=P; term=telomere maintenance; GOid=GO:0000723; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000003274; FT date=20061212" FT /colour=7 FT /fasta_file="fasta/c553.tab.seq.00005.out" FT /fasta_file="fasta/c736.tab.seq.00008.out" FT /product="meiotic chromosome segregation protein" FT /synonym="SPCC736.01c" FT /systematic_id="SPCC553.01c" FT /gene="SPCC553.01c" FT /gene="SPCC736.01c" FT /controlled_curation="term=similar to human FLJ11331; FT date=20061212" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070205" FT /controlled_curation="term=similar to S. cerevisiae FT YGR042W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(311529..311709) FT /note="nominal overlap with cosmid SPCC553, EM:AL023704 S. FT pombe chromosome 3" FT misc_feature 311529..311709 FT /note="nominal overlap with cosmid SPCC736, EM:AL023705 S. FT pombe chromosome 3" FT CDS 313183..314043 FT /colour=8 FT /fasta_file="fasta/c736.tab.seq.00012.out" FT /product="sequence orphan" FT /systematic_id="SPCC736.02" FT /gene="SPCC736.02" FT /controlled_curation="term=sequence orphan; date=19700101" FT /controlled_curation="term=sequence orphan, FT uncharacterised; date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT CDS complement(314364..315653) FT /EC_number="6.1.1.20" FT /GO="aspect=C; term=mitochondrion; GOid=GO:0005739; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P08425; FT date=20030626" FT /GO="aspect=F; term=ATP binding; GOid=GO:0005524; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF01409; FT date=20040914" FT /GO="aspect=F; term=phenylalanine-tRNA ligase activity; FT GOid=GO:0004826; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P08425; date=20030626" FT /GO="aspect=P; term=phenylalanyl-tRNA aminoacylation; FT GOid=GO:0006432; evidence=IC; db_xref=PMID:17072883; FT from=GO:0004826; date=20030626" FT /colour=7 FT /fasta_file="fasta/c736.tab.seq.00027.out" FT /product="mitochondrial phenylalanyl-tRNA synthetase" FT /db_xref="PATH:MAP00400;" FT /db_xref="PATH:MAP00970;" FT /systematic_id="SPCC736.03c" FT /gene="SPCC736.03c" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YPR047W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(316725..317852) FT /EC_number="2.4.1.-" FT /GO="aspect=P; term=protein amino acid galactosylation; FT GOid=GO:0042125; evidence=IMP; db_xref=PMID:9839953; FT date=20050120" FT /GO="aspect=P; term=cell wall biosynthesis (sensu Fungi); FT GOid=GO:0009272; evidence=IMP; db_xref=PMID:9839953; FT date=20050120" FT /GO="aspect=P; term=protein amino acid O-linked FT glycosylation; GOid=GO:0006493; evidence=IMP; FT db_xref=PMID:9839953; date=20050120" FT /GO="aspect=P; term=protein amino acid N-linked FT glycosylation; GOid=GO:0006487; evidence=IMP; FT db_xref=PMID:9839953; date=20050120" FT /GO="aspect=C; term=Golgi membrane; GOid=GO:0000139; FT evidence=IDA; db_xref=PMID:95003210; date=20050120" FT /GO="aspect=F; term=alpha-1,2-galactosyltransferase FT activity; GOid=GO:0031278; evidence=IMP; FT db_xref=PMID:95003210; date=20050120" FT /colour=2 FT /controlled_curation="term=conserved family (fungal and FT plant); date=20070428" FT /controlled_curation="term=non-essential; FT db_xref=PMID:7522655; date=19700101" FT /controlled_curation="term=GMA12/MNN10 family; FT date=19700101" FT /controlled_curation="term=predicted N-terminal signal FT sequence; date=19700101" FT /controlled_curation="term=similar to S. pombe gmh1 and FT gmh2 and gmh3 and SPBC1289.13C and SPAC5H10.13C and FT SPAC637.06 and SPBC8D2.17 (paralogs); date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YDR245W and YJL183W; date=19700101" FT /fasta_file="fasta/c736.tab.seq.00044.out" FT /primary_name="gma12" FT /product="alpha-1,2-galactosyltransferase Gma12 (PMID FT 95003210)" FT /systematic_id="SPCC736.04c" FT /gene="gma12" FT /gene="SPCC736.04c" FT CDS join(320617..320755,320964..321335,321387..321523) FT /controlled_curation="term=wtf element; FT db_xref=PMID:12952871; date=20070223" FT /fasta_file="fasta/c736.tab.seq.00029.out" FT /primary_name="wtf7" FT /product="wtf element Wtf7" FT /systematic_id="SPCC736.05" FT /gene="SPCC736.05" FT /gene="wtf7" FT misc_feature 320756..320761 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 320941..320963 FT /colour=6 FT /note="ctaatattttttttctttttcag, splice branch and FT acceptor" FT misc_feature 321336..321341 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 321375..321386 FT /colour=6 FT /note="ttaacttaatag, splice branch and acceptor" FT misc_RNA 322430..322711 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /systematic_id="SPNCRNA.462" FT /note="WARNING:this transcript could be on either strand" FT /synonym="SPNG2101" FT /product="non-coding RNA (predicted)" FT CDS 323032..324867 FT /GO="aspect=C; term=mitochondrion; GOid=GO:0005739; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P15179; FT date=20030620" FT /GO="aspect=F; term=ATP binding; GOid=GO:0005524; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00152; FT date=20040914" FT /GO="aspect=F; term=aspartate-tRNA ligase activity; FT GOid=GO:0004815; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P15179; date=20030620" FT /GO="aspect=F; term=tRNA binding; GOid=GO:0000049; FT evidence=IC; db_xref=PMID:17072883; from=GO:0004815; FT date=20040914" FT /GO="aspect=P; term=aspartyl-tRNA aminoacylation; FT GOid=GO:0006422; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P15179; date=20040625" FT /colour=7 FT /fasta_file="fasta/c736.tab.seq.00030.out" FT /product="mitochondrial aspartate-tRNA ligase" FT /db_xref="PATH:MAP00260;" FT /db_xref="PATH:MAP00970;" FT /systematic_id="SPCC736.06" FT /gene="SPCC736.06" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YPL104W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(join(324921..326872,326947..327094)) FT /colour=10 FT /fasta_file="fasta/c736.tab.seq.00011.out" FT /product="conserved fungal protein" FT /systematic_id="SPCC736.07c" FT /gene="SPCC736.07c" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YFL023W; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_feature complement(326873..326894) FT /colour=6 FT /note="ctaattgctaatgaaaatccag, splice branch and acceptor" FT misc_feature complement(326941..326946) FT /colour=6 FT /note="gtacgt, splice donor sequence" FT CDS join(327542..327623,327702..329461) FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=NAS; db_xref=PMID:17072883; date=20060226" FT /GO="aspect=F; term=DNA binding; FT qualifier=inferred_from_context; GOid=GO:0003677; FT evidence=ISS; db_xref=PMID:17072883; with=FB:FBgn0004837; FT date=20060226" FT /GO="aspect=F; term=transcriptional activator activity; FT GOid=GO:0016563; evidence=ISS; db_xref=PMID:17072883; FT with=FB:FBgn0004837; date=20060226" FT /GO="aspect=F; term=transcription factor activity; FT GOid=GO:0003700; evidence=IC; db_xref=PMID:17072883; FT from=GO:0003677|GO:0016563; date=20060226" FT /GO="aspect=P; term=positive regulation of transcription FT from RNA polymerase II promoter; GOid=GO:0045944; FT evidence=ISS; db_xref=PMID:17072883; with=FB:FBgn0004837; FT date=20060226" FT /colour=7 FT /fasta_file="fasta/c736.tab.seq.00041.out" FT /product="CBF1/Su(H)/LAG-1 family transcription factor" FT /systematic_id="SPCC736.08" FT /reserved_name="cbf11" FT /primary_name="cbf11" FT /gene="SPCC736.08" FT /controlled_curation="term=TIG domain; qualifier=inferred FT from context; date=19700101" FT /controlled_curation="term=conserved eukaryotic family; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=non-essential; FT db_xref=PMID:12618370; date=19700101" FT /controlled_curation="term=C promoter element Binding FT Factor; cv=name_derivation; date=20070712" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature 327624..327629 FT /colour=6 FT /note="gtaagc, splice donor sequence" FT misc_feature 327681..327701 FT /colour=6 FT /note="tagctaacggatttttctag, splice branch and acceptor" FT CDS complement(329749..330444) FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=NAS; db_xref=PMID:17072883; date=20060224" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:16043634; FT with=GeneDB_Spombe:SPAC30.03c; date=20050811" FT /GO="aspect=P; term=double-strand break repair via FT homologous recombination; qualifier=NOT; GOid=GO:0000724; FT evidence=TAS; db_xref=PMID:18062930; date=20080829" FT /GO="aspect=P; term=double-strand break repair via FT nonhomologous end joining; qualifier=NOT; GOid=GO:0006303; FT evidence=TAS; db_xref=PMID:18062930; date=20080829" FT /colour=2 FT /fasta_file="fasta/c736.tab.seq.00042.out" FT /product="TRAX (PMID 16043634)" FT /systematic_id="SPCC736.09c" FT /gene="SPCC736.09c" FT /controlled_curation="term=translin family; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=non-essential; FT db_xref=PMID:12618370; date=19700101" FT /controlled_curation="term=disease associated, cancer; FT db_xref=PMID:18062930; date=20080829" FT /controlled_curation="term=undergoes depletion in translin FT deficient cells via a translin-dependent proteasome FT independent pathway; db_xref=PMID:18062930; date=20080829" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT tRNA complement(331228..331300) FT /gene="SPCTRNAPHE.04" FT /note="tRNA Phe anticodon GAA, Cove score 69.56" FT /product="tRNA Phenylalanine" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=RCA; db_xref=PMID:17072883; date=20070711" FT /GO="aspect=P; term=translational elongation; FT GOid=GO:0006414; evidence=RCA; db_xref=PMID:17072883; FT date=20070711" FT /GO="aspect=F; term=GAA codon-amino acid adaptor activity; FT GOid=GO:0033459; evidence=RCA; db_xref=PMID:17072883; FT date=20070711" FT /systematic_id="SPCTRNAPHE.04" FT CDS complement(332025..332483) FT /GO="aspect=F; term=structural constituent of ribosome; FT GOid=GO:0003735; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:Q03799; date=20040505" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:Q03799; FT date=20040505" FT /GO="aspect=C; term=mitochondrial small ribosomal subunit; FT GOid=GO:0005763; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:Q03799; date=20040505" FT /colour=7 FT /fasta_file="fasta/c736.tab.seq.00034.out" FT /primary_name="mrps8" FT /product="mitochondrial ribosomal protein subunit S8" FT /systematic_id="SPCC736.10c" FT /gene="SPCC736.10c" FT /gene="mrps8" FT /controlled_curation="term=conserved fungal protein; FT date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YMR158W; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_RNA 332801..332905 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /systematic_id="SPNCRNA.463" FT /note="WARNING:this transcript could be on either strand" FT /synonym="SPNG2105" FT /product="non-coding RNA (predicted)" FT misc_RNA 333503..333624 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /systematic_id="SPNCRNA.464" FT /note="WARNING:this transcript could be on either strand" FT /synonym="SPNG2106" FT /product="non-coding RNA (predicted)" FT CDS join(334137..334265,334637..337012) FT /GO="aspect=C; term=ARC complex; GOid=GO:0033167; FT evidence=IDA; db_xref=PMID:17310250; date=20070323" FT /GO="aspect=C; term=RITS complex; GOid=GO:0030958; FT evidence=IDA; db_xref=PMID:14704433; date=20041102" FT /GO="aspect=C; term=centric heterochromatin; FT GOid=GO:0005721; evidence=IDA; db_xref=PMID:15475954; FT date=20050307" FT /GO="aspect=C; term=mating-type region heterochromatin; FT GOid=GO:0031934; evidence=IDA; db_xref=PMID:15475954; FT date=20050307" FT /GO="aspect=C; term=nuclear telomeric heterochromatin; FT GOid=GO:0005724; evidence=IDA; db_xref=PMID:15475954; FT date=20050307" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:14704433; FT with=GeneDB_Spombe:SPAC18G6.02c; date=20041102" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:14704433; FT with=GeneDB_Spombe:SPBC83.03c; date=20041102" FT /GO="aspect=P; term=RNA interference; GOid=GO:0016246; FT evidence=TAS; db_xref=PMID:12193640; date=20041102" FT /GO="aspect=P; term=chromatin silencing at centromere; FT GOid=GO:0030702; evidence=IMP; db_xref=PMID:10545449; FT date=20041214" FT /GO="aspect=P; term=chromatin silencing at centromere; FT qualifier=required|regulates; GOid=GO:0030702; FT evidence=IMP; db_xref=PMID:12193640; date=20041102" FT /GO="aspect=P; term=chromatin silencing at silent FT mating-type cassette; qualifier=NOT; GOid=GO:0030466; FT evidence=IMP; db_xref=PMID:10545449; date=20041214" FT /GO="aspect=P; term=chromatin silencing at telomere; FT qualifier=NOT; GOid=GO:0006348; evidence=IMP; FT db_xref=PMID:10545449; date=20041214" FT /GO="aspect=P; term=chromosome segregation; FT GOid=GO:0007059; evidence=IGI; db_xref=PMID:10545449; FT with=GeneDB_Spombe:SPBC16A3.15c; date=20041102" FT /GO="aspect=P; term=regulation of histone H3-K9 FT methylation; GOid=GO:0051570; evidence=IMP; FT db_xref=PMID:12193640; date=20041102" FT /GO="aspect=P; term=small RNA-mediated chromatin FT silencing; GOid=GO:0031048; evidence=IMP; FT db_xref=PMID:12733640; date=20041102" FT /GO="aspect=P; term=RNA interference, conversion of ds FT siRNA to ss siRNA; GOid=GO:0033168; evidence=IMP; FT db_xref=PMID:17310250; date=20070323" FT /colour=2 FT /fasta_file="fasta/c736.tab.seq.00035.out" FT /primary_name="ago1" FT /product="argonaute" FT /synonym="csp9" FT /systematic_id="SPCC736.11" FT /gene="ago1" FT /gene="csp9" FT /gene="SPCC736.11" FT /controlled_curation="term=RDRC and RITS complexes FT associate together, and with non coding centromeric RNA in FT a Dcr1 (hence siRNA) and Clr4 dependent manner; FT db_xref=PMID:15607976; date=20050322" FT /controlled_curation="term=functions upstream of swi6; FT db_xref=PMID:12193640; date=19700101" FT /controlled_curation="term=eIF2C; date=19700101" FT /controlled_curation="term=Piwi domain; date=19700101" FT /controlled_curation="term=PAZ domain; date=19700101" FT /controlled_curation="term=non-essential; FT db_xref=PMID:12733640; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=functionally complemented by FT human hAGO2; db_xref=PMID:14699070; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 334266..334271 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 334618..334636 FT /colour=6 FT /note="ttaacgccttttgttgtag, splice branch and acceptor" FT CDS complement(join(337829..337985,338030..338178,338232..338347,338395..339354,339483..339567)) FT /colour=2 FT /primary_name="mmi1" FT /product="YTH family protein Mmi1" FT /systematic_id="SPCC736.12c" FT /GO="aspect=C; term=Mei2 nuclear dot; GOid=GO:0033620; FT evidence=IDA; db_xref=PMID:16823445; date=20071011" FT /GO="aspect=F; term=RNA binding; GOid=GO:0003723; FT evidence=IPI; db_xref=PMID:16823445; FT with=GeneDB_Spombe:SPAC27D7.03c; date=20071011" FT /GO="aspect=F; term=RNA binding; GOid=GO:0003723; FT evidence=IPI; db_xref=PMID:16823445; FT with=GeneDB_Spombe:SPNCRNA.103; date=20071011" FT /GO="aspect=F; term=mRNA binding; GOid=GO:0003729; FT evidence=IDA; db_xref=PMID:16823445; date=20071011" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:16823445; FT with=GeneDB_Spombe:SPAC1F3.01; date=20071011" FT /GO="aspect=P; term=mRNA catabolic process, FT meiosis-specific transcripts; GOid=GO:0033621; FT evidence=IMP; db_xref=PMID:16823445; date=20071011" FT /GO="aspect=P; term=negative regulation of meiosis; FT GOid=GO:0045835; evidence=IMP; db_xref=PMID:16823445; FT date=20071011" FT /note="targets include meu26, crs1, mug9, meu1, rec8, FT bqt1, mug1, ssm4, spo5, rec25 PMID:16823445" FT /fasta_file="fasta/c736.tab.seq.00010.out" FT /fasta_file="%uniprot:fasta/chromosome3.contig.seq.04366.out" FT /gene="mmi1" FT /gene="SPCC736.12c" FT /controlled_curation="term=conserved eukaryotic family; FT date=19700101" FT /controlled_curation="term=YTH family protein; FT date=19700101" FT /controlled_curation="term=serine-rich protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YDR374C; date=19700101" FT /controlled_curation="term=Meiotic mRNA Interception; FT cv=name_derivation; db_xref=PMID:16823445; date=20071011" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature complement(338179..338193) FT /colour=6 FT /note="ctaacactttaacag, splice branch and acceptor" FT misc_feature complement(338226..338231) FT /colour=6 FT /note="gtttgt, splice donor sequence" FT misc_feature complement(338348..338359) FT /colour=6 FT /note="ctaacaacttag, splice branch and acceptor" FT misc_feature complement(338389..338394) FT /colour=6 FT /note="gtaagg, splice donor sequence" FT misc_feature complement(339355..339371) FT /colour=6 FT /note="ctaaccaccttatatag, splice branch and acceptor" FT misc_feature complement(339477..339482) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT CDS complement(340769..341788) FT /colour=10 FT /fasta_file="fasta/c736.tab.seq.00043.out" FT /product="short chain dehydrogenase (predicted)" FT /systematic_id="SPCC736.13" FT /gene="SPCC736.13" FT /controlled_curation="term=conserved eukaryotic family; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YOR246C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT CDS join(343034..343084,343352..345949) FT /GO="aspect=C; term=spindle pole body; FT qualifier=colocalizes_with|during_mitosis; FT GOid=GO:0005816; evidence=IDA; db_xref=PMID:7628693; FT date=20040707" FT /GO="aspect=P; term=attachment of spindle microtubules to FT kinetochore; GOid=GO:0008608; evidence=IDA; FT db_xref=PMID:12426374; date=20040707" FT /GO="aspect=P; term=sister chromatid segregation; FT qualifier=required; GOid=GO:0000819; evidence=IMP; FT db_xref=PMID:17072883; date=20040707" FT /GO="aspect=P; term=microtubule-based process; FT GOid=GO:0007017; evidence=IC; db_xref=PMID:17072883; FT from=GO:0008017; date=20040707" FT /GO="aspect=C; term=microtubule; FT qualifier=colocalizes_with|during_interphase; FT GOid=GO:0005874; evidence=IDA; db_xref=PMID:9078390; FT date=20040707" FT /GO="aspect=F; term=microtubule binding; GOid=GO:0008017; FT evidence=IDA; db_xref=PMID:9078390; date=20041011" FT /GO="aspect=P; term=mitotic spindle assembly; FT GOid=GO:0051225; evidence=TAS; db_xref=PMID:14742702; FT date=20050107" FT /GO="aspect=C; term=condensed chromosome kinetochore; FT qualifier=colocalizes_with|during_mitosis; FT GOid=GO:0000777; evidence=TAS; db_xref=PMID:14742702; FT date=20040707" FT /colour=2 FT /fasta_file="fasta/c736.tab.seq.00038.out" FT /primary_name="dis1" FT /product="microtubule-associated protein Dis1 (PMID FT 7628693)" FT /systematic_id="SPCC736.14" FT /gene="dis1" FT /gene="SPCC736.14" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=MAP215/Dis1 family; FT date=19700101" FT /controlled_curation="term=HEAT repeat; date=19700101" FT /controlled_curation="term=phosphorylated at Cdc2p target FT sites; db_xref=PMID:7628693; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YLR045C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_RNA complement(343079..346451) FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=antisense; date=20071312" FT /synonym="SPNG2AF57" FT /product="non-coding RNA (predicted)" FT /systematic_id="SPNCRNA.578" FT misc_feature 343085..343090 FT /colour=6 FT /note="gtaagc, splice donor sequence" FT misc_feature 343335..343351 FT /colour=6 FT /note="ctaactgatttatttag, splice branch and acceptor" FT misc_feature 345946..348691 FT /note="low complexity gene free region" FT misc_feature 346947..347564 FT /db_xref="PMID:18488015" FT /controlled_curation="term=no detectable long open reading FT frame;date=20071008" FT /controlled_curation="term=transcription in low-complexity FT region; date=20071008" FT /controlled_curation="term=low complexity; date=20071008" FT /systematic_id="SPNCRNA.465" FT /note="WARNING:this transcription could be on either FT strand" FT /note="SPNG2109" FT 5'UTR 348692..349171 FT /note="mRNA from AU012604" FT /gene="SPCC736.15" FT CDS 349172..350227 FT /colour=10 FT /fasta_file="fasta/c736.tab.seq.00039.out" FT /product="protein kinase inhibitor (predicted)" FT /systematic_id="SPCC736.15" FT /gene="SPCC736.15" FT /controlled_curation="term=conserved fungal family; FT date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YGR086C and YPL004C; date=19700101" FT /controlled_curation="term=similar to S. pombe FT SPAC3C7.02c; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT 3'UTR 350228..351165 FT /note="mRNA from AU012619" FT /gene="SPCC736.15" FT misc_feature 351166..354455 FT /note="low-complexity gene-free region" FT CDS join(354456..354756,354856..354946,355269..357252) FT /colour=10 FT /fasta_file="fasta/c736.tab.seq.00007.out" FT /fasta_file="fasta/c594.tab.seq.00001.out" FT /product="DUF1769 family protein" FT /synonym="SPCC736.16" FT /systematic_id="SPCC594.01" FT /gene="SPCC594.01" FT /gene="SPCC736.16" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=similar to U. maydis UM04005.1; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_feature complement(354737..355570) FT /note="nominal overlap with cosmid SPCC594, EM:AL031523 S. FT pombe chromosome 3" FT misc_feature 354737..355570 FT /note="nominal overlap with cosmid SPCC736, EM:AL023705 S. FT pombe chromosome 3" FT misc_feature 354757..354762 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 354838..354855 FT /colour=6 FT /note="ctaattccttttcactag, splice branch and acceptor" FT misc_feature 354947..354952 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 355252..355268 FT /colour=6 FT /note="ttaaccttttgacttag, splice branch and acceptor" FT CDS complement(358264..359733) FT /colour=10 FT /fasta_file="fasta/c594.tab.seq.00018.out" FT /product="conserved fungal protein" FT /systematic_id="SPCC594.02c" FT /gene="SPCC594.02c" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YHL026C; date=19700101" FT /controlled_curation="term=3 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT CDS 361356..361682 FT /colour=6 FT /controlled_curation="term=dubious; date=19700101" FT /fasta_file="fasta/c594.tab.seq.00019.out" FT /product="dubious" FT /systematic_id="SPCC594.03" FT /gene="SPCC594.03" FT CDS complement(362699..363715) FT /GO="aspect=F; term=steroid dehydrogenase activity; FT GOid=GO:0016229; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF06966; date=20051021" FT /GO="aspect=P; term=steroid metabolic process; FT GOid=GO:0008202; evidence=IC; db_xref=PMID:17072883; FT from=GO:0016229; date=20070208" FT /colour=7 FT /fasta_file="fasta/c594.tab.seq.00025.out" FT /product="steroid oxidoreductase superfamily protein" FT /systematic_id="SPCC594.04c" FT /gene="SPCC594.04c" FT /controlled_curation="term=DUF1295; date=19700101" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=19700101" FT /controlled_curation="term=5 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(364204..365478) FT /GO="aspect=P; term=chromatin remodeling; GOid=GO:0006338; FT evidence=IC; db_xref=PMID:17072883; from=GO:0048188; FT date=20040924" FT /GO="aspect=C; term=COMPASS complex; GOid=GO:0048188; FT evidence=IDA; db_xref=PMID:12488447; date=20041209" FT /GO="aspect=C; term=chromatin; GOid=GO:0000785; FT evidence=IC; db_xref=PMID:17072883; from=GO:0048188; FT date=20041209" FT /GO="aspect=P; term=regulation of histone H3-K4 FT methylation; qualifier=required; GOid=GO:0051569; FT evidence=IMP; db_xref=PMID:12488447; date=20051018" FT /colour=2 FT /fasta_file="fasta/c594.tab.seq.00021.out" FT /note="spp1 is already used by SPAC6B12.10c" FT /obsolete_name="spp1" FT /obsolete_name="spp1" FT /product="COMPASS complex subunit (predicted)" FT /systematic_id="SPCC594.05c" FT /gene="SPCC594.05c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=zinc finger protein; FT date=19700101" FT /controlled_curation="term=zf-PHD finger; date=19700101" FT /controlled_curation="term=non-essential; FT db_xref=PMID:12488447; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YPL138C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(join(365928..366917,366954..366989)) FT /GO="aspect=F; term=phosphoinositide binding; FT GOid=GO:0035091; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00787; date=20041018" FT /GO="aspect=F; term=SNAP receptor activity; FT GOid=GO:0005484; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000003180; date=20051003" FT /GO="aspect=P; term=Golgi to vacuole transport; FT GOid=GO:0006896; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000003180; date=20051003" FT /GO="aspect=P; term=vesicle fusion; GOid=GO:0006906; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000003180; FT date=20051003" FT /GO="aspect=C; term=vacuolar membrane (sensu Fungi); FT GOid=GO:0000329; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000003180; date=20051003" FT /GO="aspect=P; term=meiosis; GOid=GO:0007126; FT evidence=IMP; db_xref=PMID:16169489; date=20060203" FT /GO="aspect=P; term=meiosis; GOid=GO:0007126; FT evidence=IEP; db_xref=PMID:12161753; date=20060203" FT /colour=7 FT /fasta_file="fasta/c594.tab.seq.00024.out" FT /product="SNARE Vam7 (predicted)" FT /systematic_id="SPCC594.06c" FT /gene="SPCC594.06c" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070427" FT /controlled_curation="term=SNARE; qualifier=predicted; FT date=19700101" FT /controlled_curation="term=PX domain protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YGL212W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature complement(366918..366938) FT /colour=6 FT /note="ttaatttttacttacaactag, splice branch and acceptor" FT misc_feature complement(366948..366953) FT /colour=6 FT /note="gtaagc, splice donor sequence" FT CDS complement(join(368179..368790,368840..368995)) FT /colour=8 FT /fasta_file="fasta/c594.tab.seq.00002.out" FT /product="sequence orphan" FT /systematic_id="SPCC594.07c" FT /gene="SPCC594.07c" FT /controlled_curation="term=sequence orphan; date=19700101" FT /controlled_curation="term=8 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=predicted N-terminal signal FT sequence; date=19700101" FT /controlled_curation="term=sequence orphan, FT uncharacterised; date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT misc_feature complement(368791..368808) FT /colour=6 FT /note="ctaacaatggattgaaag, splice branch and acceptor" FT misc_feature complement(368834..368839) FT /colour=6 FT /note="gtatgc, splice donor sequence" FT misc_feature 369429..371366 FT /note="nominal overlap with cosmid SPCC1682 and cosmid FT SPCC594" FT CDS join(371230..371286,371353..371438,371498..371546,371612..371677) FT /EC_number="1.10.2.2" FT /GO="aspect=F; term=ubiquinol-cytochrome-c reductase FT activity; qualifier=contributes_to; GOid=GO:0008121; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P22289; FT date=20040505" FT /GO="aspect=P; term=mitochondrial electron transport, FT ubiquinol to cytochrome c; GOid=GO:0006122; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P22289; date=20040505" FT /GO="aspect=C; term=respiratory chain complex III (sensu FT Eukaryota); GOid=GO:0005750; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P22289; date=20040505" FT /GO="aspect=P; term=iron-sulfur cluster assembly; FT GOid=GO:0016226; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P22289; date=20040505" FT /colour=7 FT /fasta_file="fasta/c1682.tab.seq.00034.out" FT /primary_name="qcr9" FT /product="ubiquinol-cytochrome-c reductase complex subunit FT 10" FT /systematic_id="SPCC1682.01" FT /gene="qcr9" FT /gene="SPCC1682.01" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=Cyt c1-associated protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YGR183C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 371287..371292 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 371335..371352 FT /colour=6 FT /note="ttaatcaatttcaattag, splice branch and acceptor" FT misc_feature 371439..371444 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 371486..371497 FT /colour=6 FT /note="ctaatgttctag, splice branch and acceptor" FT misc_feature 371547..371552 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 371597..371611 FT /colour=6 FT /note="ctaacaagacgatag, splice branch and acceptor" FT CDS complement(372447..375086) FT /GO="aspect=P; term=DNA replication initiation; FT qualifier=required; GOid=GO:0006270; evidence=IDA; FT db_xref=PMID:9366552; date=20050104" FT /GO="aspect=C; term=MCM complex; GOid=GO:0042555; FT evidence=IDA; db_xref=PMID:9366552; date=20050104" FT /GO="aspect=P; term=S phase of mitotic cell cycle; FT GOid=GO:0000084; evidence=IC; db_xref=PMID:17072883; FT from=GO:0006270; date=20050104" FT /GO="aspect=C; term=pre-replicative complex; FT GOid=GO:0005656; evidence=IC; db_xref=PMID:17072883; FT from=GO:0042555; date=20050125" FT /colour=2 FT /fasta_file="fasta/c1682.tab.seq.00035.out" FT /primary_name="mcm3" FT /product="MCM complex subunit Mcm3" FT /systematic_id="SPCC1682.02c" FT /gene="mcm3" FT /gene="SPCC1682.02c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070425" FT /controlled_curation="term=conserved in Archaea; FT date=20081109" FT /controlled_curation="term=similar to S. cerevisiae FT YEL032W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(join(375965..376590,376628..377882)) FT /GO="aspect=P; term=sporulation (sensu Fungi); FT GOid=GO:0030437; evidence=IMP; db_xref=PMID:16303567; FT date=20051007" FT /colour=2 FT /controlled_curation="term=no apparent orthologs; FT date=19700101" FT /controlled_curation="term=meiotic expression upregulated; FT db_xref=PMID:16303567; date=20080908" FT /fasta_file="fasta/c1682.tab.seq.00036.out" FT /primary_name="mug174" FT /product="meiotically upregulated gene Mug174" FT /systematic_id="SPCC1682.03c" FT /gene="mug174" FT /gene="SPCC1682.03c" FT misc_feature complement(376591..376602) FT /colour=6 FT /note="ctaacttagtag, splice branch and acceptor" FT misc_feature complement(376622..376627) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT CDS join(378229..378523,378690..378925) FT /GO="aspect=C; term=half bridge of spindle pole body; FT GOid=GO:0005825; evidence=IDA; db_xref=PMID:12857865; FT date=20040930" FT /GO="aspect=C; term=nuclear pore; GOid=GO:0005643; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005783; FT date=20040930" FT /GO="aspect=F; term=calcium ion binding; GOid=GO:0005509; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00036; FT date=20040930" FT /GO="aspect=F; term=structural molecule activity; FT GOid=GO:0005198; evidence=TAS; db_xref=PMID:16775007; FT date=20060619" FT /GO="aspect=P; term=protein localization; FT qualifier=required|localization_dependency; FT GOid=GO:0008104; evidence=IGI; db_xref=PMID:12857865; FT with=GeneDB_Spombe:SPBC12D12.01; date=20050715" FT /GO="aspect=P; term=spindle pole body duplication; FT GOid=GO:0030474; evidence=IMP; db_xref=PMID:12857865; FT date=20040930" FT /colour=2 FT /fasta_file="fasta/c1682.tab.seq.00003.out" FT /primary_name="cdc31" FT /product="centrin" FT /systematic_id="SPCC1682.04" FT /gene="cdc31" FT /gene="SPCC1682.04" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=EF hand; date=19700101" FT /controlled_curation="term=caltractin-cdc31 subfamily; FT date=19700101" FT /controlled_curation="term=essential; FT db_xref=PMID:12857865; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YOR257W; date=19700101" FT /controlled_curation="term=human CETN3 ortholog; FT db_xref=UniProtKB:O15182; date=20080624" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 378524..378529 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 378676..378689 FT /colour=6 FT /note="ctaattagatatag, splice branch and acceptor" FT CDS complement(join(379065..379652,379728..380604,380660..380922,380969..381034)) FT /GO="aspect=F; term=endoplasmic reticulum signal peptide FT binding; qualifier=contributes_to; GOid=GO:0030942; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000006164; FT date=20050310" FT /GO="aspect=P; term=SRP-dependent cotranslational protein FT targeting to membrane, signal sequence recognition; FT GOid=GO:0006617; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000006164; date=20050310" FT /GO="aspect=C; term=signal recognition particle (sensu FT Eukaryota); GOid=GO:0005786; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000006164; date=20050310" FT /colour=7 FT /fasta_file="fasta/c1682.tab.seq.00038.out" FT /product="signal recognition particle subunit (predicted)" FT /systematic_id="SPCC1682.05c" FT /gene="SPCC1682.05c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=TPR repeat protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YPL243W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(379653..379669) FT /colour=6 FT /note="ctaatagattgctatag, splice branch and acceptor" FT misc_feature complement(379722..379727) FT /colour=6 FT /note="gtaaga, splice donor sequence" FT misc_feature complement(380605..380630) FT /colour=6 FT /note="ctaattatgtacttcttttgttatag, splice branch and FT accept or" FT misc_feature complement(380654..380659) FT /colour=6 FT /note="gtaaga, splice donor sequence" FT misc_feature complement(380923..380933) FT /colour=6 FT /note="ttaacttgcag, splice branch and acceptor" FT misc_feature complement(380963..380968) FT /colour=6 FT /note="gtgagt, splice donor sequence" FT LTR complement(381641..382003) FT /colour=4 FT CDS join(382377..382767,382813..383138) FT /colour=8 FT /fasta_file="fasta/c1682.tab.seq.00001.out" FT /product="sequence orphan" FT /systematic_id="SPCC1682.06" FT /gene="SPCC1682.06" FT /controlled_curation="term=sequence orphan; date=19700101" FT /controlled_curation="term=recent duplication; FT date=19700101" FT /controlled_curation="term=2 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=similar to S. pombe FT SPBC18H10.18C; date=19700101" FT /controlled_curation="term=sequence orphan, FT uncharacterised; date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT misc_feature 382768..382773 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 382798..382812 FT /colour=6 FT /note="ctaacgattttctag, splice branch and acceptor" FT CDS join(384473..384690,384821..385868) FT /GO="aspect=C; term=transcription factor TFIIH complex; FT GOid=GO:0005675; evidence=TAS; db_xref=PMID:10077189; FT date=20040921" FT /GO="aspect=P; term=transcription initiation from RNA FT polymerase II promoter; GOid=GO:0006367; evidence=IC; FT db_xref=PMID:17072883; from=GO:0005675; date=20040921" FT /GO="aspect=P; term=DNA repair; GOid=GO:0006281; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000003995; FT date=20060503" FT /GO="aspect=F; term=general RNA polymerase II FT transcription factor activity; GOid=GO:0016251; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000003995; FT date=20060503" FT /colour=2 FT /fasta_file="fasta/c1682.tab.seq.00040.out" FT /obsolete_name="tfh47" FT /obsolete_name="tfh47" FT /primary_name="ssl1" FT /product="transcription factor TFIIH complex subunit Ssl1" FT /systematic_id="SPCC1682.07" FT /gene="ssl1" FT /gene="SPCC1682.07" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070427" FT /controlled_curation="term=zinc finger protein; FT date=19700101" FT /controlled_curation="term=zf-C2H2 type; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YLR005W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 384691..384696 FT /colour=6 FT /note="gtatgg, splice donor sequence" FT intron 384731..384820 FT /note="Intron confirmed by EST" FT /gene="ssl1" FT /gene="SPCC1682.07" FT misc_feature 384799..384820 FT /colour=6 FT /note="ctaacttgtcaatctgatttag, splice branch and acceptor" FT CDS complement(386124..388235) FT /GO="aspect=F; term=RNA binding; GOid=GO:0003723; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00806; FT date=20051019" FT /GO="aspect=P; term=meiosis; GOid=GO:0007126; FT evidence=IEP; db_xref=PMID:17072883; with=PMID:12161753; FT date=20070202" FT /colour=10 FT /fasta_file="fasta/c1682.tab.seq.00005.out" FT /product="RNA-binding protein Mcp2" FT /reserved_name="mcp2" FT /systematic_id="SPCC1682.08c" FT /gene="mcp2" FT /gene="SPCC1682.08c" FT /controlled_curation="term=pumilio family; date=19700101" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=related to S. pombe SPAC4G9.05; FT date=19700101" FT /controlled_curation="term=similar to N. crassa FT B17C10.150; date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_RNA 388528..389199 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=antisense; date=20071312" FT /synonym="SPNG2AF63" FT /product="non-coding RNA (predicted)" FT /systematic_id="SPNCRNA.579" FT CDS complement(join(388702..389218,389318..389412,389534..389824)) FT /GO="aspect=C; term=mitochondrial inner membrane; FT GOid=GO:0005743; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P38988; date=20040629" FT /GO="aspect=F; term=guanine nucleotide transporter FT activity; GOid=GO:0001409; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P38988; date=20040629" FT /GO="aspect=P; term=guanine nucleotide transport; FT GOid=GO:0001408; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P38988; date=20040629" FT /GO="aspect=P; term=mitochondrial genome maintenance; FT GOid=GO:0000002; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P38988; date=20040629" FT /GO="aspect=P; term=iron ion homeostasis; GOid=GO:0006879; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P38988; FT date=20040629" FT /colour=7 FT /fasta_file="fasta/c1682.tab.seq.00042.out" FT /product="guanine nucleotide transporter" FT /systematic_id="SPCC1682.09c" FT /gene="SPCC1682.09c" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070427" FT /controlled_curation="term=similar to S. cerevisiae FT YDL198C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature complement(389219..389230) FT /colour=6 FT /note="ctaacttttcag, splice branch and acceptor" FT misc_feature complement(389312..389317) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature complement(389413..389425) FT /colour=6 FT /note="ctaacatgttcag, splice branch and acceptor" FT misc_feature complement(389528..389533) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT CDS join(390747..390797,390842..391765) FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=TAS; db_xref=PMID:9822592; date=20051031" FT /GO="aspect=C; term=proteasome regulatory particle, lid FT subcomplex (sensu Eukaryota); GOid=GO:0008541; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005787; FT date=20051031" FT /GO="aspect=P; term=proteasomal ubiquitin-dependent FT protein catabolism; GOid=GO:0043161; evidence=NAS; FT db_xref=PMID:17072883; date=20051031" FT /GO="aspect=P; term=ubiquitin-dependent protein FT catabolism; GOid=GO:0006511; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000005787; date=20060203" FT /GO="aspect=P; term=mitotic cell cycle; GOid=GO:0000278; FT evidence=IC; db_xref=GOC:unpublished; from=GO:0000502; FT date=20080728" FT /colour=7 FT /fasta_file="fasta/c1682.tab.seq.00043.out" FT /primary_name="rpn8" FT /product="19S proteasome regulatory subunit Rpn8 FT (predicted)" FT /systematic_id="SPCC1682.10" FT /gene="rpn8" FT /gene="SPCC1682.10" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070425" FT /controlled_curation="term=MOV34 domain; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YOR261C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 390798..390803 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 390827..390841 FT /colour=6 FT /note="ttaaccattggttag, splice branch and acceptor" FT CDS complement(join(392323..392434,392486..393025,393075..394134,394172..394184)) FT /colour=10 FT /fasta_file="fasta/c1682.tab.seq.00044.out" FT /product="DUF580 family protein" FT /systematic_id="SPCC1682.11c" FT /gene="SPCC1682.11c" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=similar to N. crassa b13i18.30; FT date=19700101" FT /controlled_curation="term=10 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_feature complement(392435..392449) FT /colour=6 FT /note="ctaactttttcacag, splice branch and acceptor" FT misc_feature complement(392480..392485) FT /colour=6 FT /note="gtgagt, splice donor sequence" FT misc_feature complement(393026..393040) FT /colour=6 FT /note="ctaacacaattgtag, splice branch and acceptor" FT misc_feature complement(393069..393074) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature complement(394135..394145) FT /colour=6 FT /note="ctaacgagtag, splice branch and acceptor" FT misc_feature complement(394166..394171) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_RNA 394354..394798 FT /controlled_curation="term=non-coding RNA; FT qualifier=predicted; db_xref=PMID:12597277; date=20050412" FT /controlled_curation="term=poly(A)-bearing RNA; FT qualifier=predicted; db_xref=PMID:12597277; date=20050412" FT /controlled_curation="term=no detectable long open reading FT frame; qualifier=predicted; db_xref=PMID:12597277; FT date=20050412" FT /db_xref="PMID:12597277" FT /db_xref="EMBL:AB084814" FT /gene="prl02" FT /gene="prl2" FT /gene="SPNCRNA.02" FT /primary_name="prl2" FT /product="non-coding RNA (predicted)" FT /synonym="prl02" FT /systematic_id="SPNCRNA.02" FT CDS complement(394883..396256) FT /colour=7 FT /fasta_file="fasta/c1682.tab.seq.00051.out" FT /primary_name="ubp16" FT /product="ubiquitin C-terminal hydrolase Ubp16" FT /reserved_name="ubp16" FT /systematic_id="SPCC1682.12c" FT /gene="SPCC1682.12c" FT /gene="ubp16" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070427" FT /controlled_curation="term=similar to S. cerevisiae FT YNL186W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT CDS 399080..399898 FT /GO="aspect=C; term=chromatin; GOid=GO:0000785; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF04433; FT date=20060103" FT /GO="aspect=P; term=chromatin remodeling; GOid=GO:0006338; FT evidence=NAS; db_xref=PMID:17072883; date=20060103" FT /GO="aspect=P; term=regulation of transcription, FT DNA-dependent; GOid=GO:0006355; evidence=NAS; FT db_xref=PMID:17072883; date=20060103" FT /GO="aspect=F; term=DNA binding; GOid=GO:0003677; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF04433; FT date=20060215" FT /colour=7 FT /fasta_file="fasta/c1682.tab.seq.00046.out" FT /note="NAS inferred from physical interactions of yeast FT proteins" FT /product="SWIRM domain protein" FT /systematic_id="SPCC1682.13" FT /gene="SPCC1682.13" FT /controlled_curation="term=conserved fungal protein; FT date=20070427" FT /controlled_curation="term=SWIRM domain; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YAL034C and YOR338W; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT CDS 400767..401348 FT /GO="aspect=C; term=cytosolic large ribosomal subunit FT (sensu Eukaryota); GOid=GO:0022625; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000002156; date=20061026" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002156; FT date=20061026" FT /GO="aspect=F; term=structural constituent of ribosome; FT GOid=GO:0003735; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002156; date=20061026" FT /colour=2 FT /fasta_file="fasta/c1682.tab.seq.00004.out" FT /primary_name="rpl1902" FT /product="60S ribosomal protein L19" FT /synonym="rpl19-2" FT /systematic_id="SPCC1682.14" FT /gene="rpl1902" FT /gene="rpl19-2" FT /gene="SPCC1682.14" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070425" FT /controlled_curation="term=similar to S. cerevisiae FT YBR084C-A and YBL027W; date=19700101" FT /controlled_curation="term=similar to S. pombe rpl1901; FT date=19700101" FT /controlled_curation="term=conserved in archaea; FT date=20081106" FT /controlled_curation="term=conserved in archaea; FT date=20081106" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS 402249..404498 FT /GO="aspect=F; term=phosphoinositide binding; FT GOid=GO:0035091; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00787; date=20041018" FT /colour=7 FT /fasta_file="fasta/c1682.tab.seq.00050.out" FT /product="PX/PXA domain protein" FT /systematic_id="SPCC1682.15" FT /primary_name="mug122" FT /gene="SPCC1682.15" FT /gene="mug122" FT /controlled_curation="term=PXA domain; date=19700101" FT /controlled_curation="term=PX domain protein; FT date=19700101" FT /controlled_curation="term=conserved fungal protein; FT date=20071106" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=20071106" FT /controlled_curation="term=meiotic expression upregulated; FT db_xref=PMID:16303567; date=20080908" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT CDS join(405612..405829,406303..407251) FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=TAS; db_xref=PMID:9822592; date=20051031" FT /GO="aspect=C; term=proteasome regulatory particle, base FT subcomplex (sensu Eukaryota); GOid=GO:0008540; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005787; FT date=20051031" FT /GO="aspect=F; term=ATP binding; GOid=GO:0005524; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005785; FT date=20051101" FT /GO="aspect=F; term=ATPase activity; GOid=GO:0016887; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00004; FT date=20051101" FT /GO="aspect=F; term=endopeptidase activity; FT GOid=GO:0004175; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000005785; date=20060203" FT /GO="aspect=P; term=proteasomal ubiquitin-dependent FT protein catabolism; GOid=GO:0043161; evidence=NAS; FT db_xref=PMID:17072883; date=20051031" FT /GO="aspect=P; term=mitotic cell cycle; GOid=GO:0000278; FT evidence=IC; db_xref=GOC:unpublished; from=GO:0000502; FT date=20080728" FT /GO="aspect=P; term=ubiquitin-dependent protein FT catabolism; GOid=GO:0006511; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000005785; date=20060203" FT /colour=7 FT /fasta_file="fasta/c1682.tab.seq.00049.out" FT /fasta_file="fasta/c306.tab.seq.00016.out" FT /obsolete_name="SPCC306.01" FT /obsolete_name="SPCC306.01" FT /primary_name="rpt4" FT /product="19S proteasome regulatory subunit Rpt4 FT (predicted)" FT /systematic_id="SPCC1682.16" FT /gene="rpt4" FT /gene="SPCC1682.16" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070425" FT /controlled_curation="term=AAA family ATPase; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YOR259C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 405830..405835 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 406289..406302 FT /colour=6 FT /note="ctaacctattctag, splice branch and acceptor" FT misc_feature 406698..406832 FT /note="nominal overlap with cosmid SPCC1682 and cosmid FT SPCC306" FT 3'UTR complement(407598..408243) FT /note="mRNA from AU008065" FT /gene="SPCC306.02c" FT CDS complement(join(408244..408693,408758..408823)) FT /GO="aspect=P; term=ER to Golgi vesicle-mediated FT transport; GOid=GO:0006888; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000004989; date=20050509" FT /GO="aspect=C; term=ER to Golgi transport vesicle; FT GOid=GO:0030134; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000004989; date=20050509" FT /GO="aspect=C; term=endoplasmic reticulum membrane; FT qualifier=associated_with; GOid=GO:0005789; evidence=IC; FT db_xref=PMID:17072883; from=GO:0030134; date=20050711" FT /GO="aspect=F; term=Rab GTPase binding; GOid=GO:0017137; FT evidence=ISS; db_xref=PMID:17072883; FT with=InterPro:IPR004895; date=20050810" FT /colour=7 FT /fasta_file="fasta/c306.tab.seq.05212.out" FT /product="Rab GTPase binding (predicted)" FT /systematic_id="SPCC306.02c" FT /gene="SPCC306.02c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YNL044W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(408694..408710) FT /colour=6 FT /note="ctaacgcaaaatggtag, splice branch and acceptor" FT intron complement(408694..408757) FT /note="confirmed" FT /gene="SPCC306.02c" FT misc_feature complement(408752..408757) FT /colour=6 FT /note="gtatga, splice donor sequence" FT CDS complement(409839..412067) FT /GO="aspect=C; term=condensin complex; GOid=GO:0000796; FT evidence=IDA; db_xref=PMID:10485849; date=20050419" FT /GO="aspect=P; term=mitotic chromosome condensation; FT qualifier=required; GOid=GO:0007076; evidence=IMP; FT db_xref=PMID:12000947; date=20050419" FT /GO="aspect=C; term=nucleus; qualifier=at_mitosis; FT GOid=GO:0005634; evidence=IDA; db_xref=PMID:10485849; FT date=20050419" FT /GO="aspect=C; term=cytoplasm; qualifier=at_mitosis; FT GOid=GO:0005737; evidence=IDA; db_xref=PMID:10485849; FT date=20050420" FT /colour=2 FT /fasta_file="fasta/c306.tab.seq.00014.out" FT /primary_name="cnd2" FT /product="condensin subunit Cnd2" FT /systematic_id="SPCC306.03c" FT /gene="cnd2" FT /gene="SPCC306.03c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070425" FT /controlled_curation="term=non-SMC subunit; date=19700101" FT /controlled_curation="term=XCAP-H; date=19700101" FT /controlled_curation="term=essential; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YBL097W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(412765..415527) FT /GO="aspect=C; term=COMPASS complex; GOid=GO:0048188; FT evidence=IDA; db_xref=PMID:12488447; date=20041209" FT /GO="aspect=F; term=RNA binding; GOid=GO:0003723; FT evidence=ISS; db_xref=PMID:17072883; with=UNIPROT:PF00076; FT date=20041209" FT /GO="aspect=F; term=histone lysine N-methyltransferase FT activity (H3-K4 specific); GOid=GO:0042800; evidence=TAS; FT db_xref=PMID:12193658; date=20041209" FT /GO="aspect=F; term=histone-lysine N-methyltransferase FT activity; GOid=GO:0018024; evidence=IDA; FT db_xref=PMID:12193658; date=20041220" FT /GO="aspect=P; term=DNA damage checkpoint; FT GOid=GO:0000077; evidence=IGI; db_xref=PMID:12589755; FT with=GeneDB_Spombe:SPBC342.05; date=20041209" FT /GO="aspect=P; term=chromatin remodeling; GOid=GO:0006338; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P38827; FT date=20040924" FT /GO="aspect=P; term=chromatin silencing; qualifier=NOT; FT GOid=GO:0006342; evidence=IMP; db_xref=PMID:12193658; FT date=20041209" FT /GO="aspect=P; term=histone methylation; GOid=GO:0016571; FT evidence=IC; db_xref=PMID:17072883; from=GO:0042800; FT date=20041209" FT /GO="aspect=P; term=telomere maintenance; GOid=GO:0000723; FT evidence=IMP; db_xref=PMID:12589755; date=20041209" FT /colour=2 FT /fasta_file="fasta/c306.tab.seq.00002.out" FT /primary_name="set1" FT /product="histone lysine methyltransferase Set1" FT /systematic_id="SPCC306.04c" FT /gene="set1" FT /gene="SPCC306.04c" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070428" FT /controlled_curation="term=SET domain; date=19700101" FT /controlled_curation="term=non-essential; FT db_xref=PMID:12589755; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YHR119W; date=19700101" FT /controlled_curation="term=rrm RNA recognition motif; FT date=19700101" FT /controlled_curation="term=Set1 mediated H 3 K4 FT methylation is preferentially enriched at euchromatic loci FT ; db_xref=PMID:12193658; date=20070704" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT CDS complement(join(416424..416532,416616..416779,417005..417577)) FT /GO="aspect=C; term=SREBP-SCAP complex; GOid=GO:0032936; FT evidence=TAS; db_xref=PMID:15797383; date=20070206" FT /GO="aspect=C; term=endoplasmic reticulum membrane; FT qualifier=cytosolic_side; GOid=GO:0005789; evidence=TAS; FT db_xref=PMID:15797383; date=20060413" FT /GO="aspect=P; term=activation of transcription in FT response to sterol depletion; GOid=GO:0006994; FT evidence=TAS; db_xref=PMID:15797383; date=20070206" FT /GO="aspect=P; term=response to hypoxia; GOid=GO:0001666; FT evidence=TAS; db_xref=PMID:15797383; date=20060413" FT /GO="aspect=P; term=specific transcription from RNA FT polymerase II promoter; GOid=GO:0032569; evidence=TAS; FT db_xref=PMID:15797383; date=20070206" FT /GO="aspect=P; term=sterol depletion response, sterol FT regulatory element binding-protein cleavage; FT GOid=GO:0006992; evidence=TAS; db_xref=PMID:15797383; FT date=20070206" FT /colour=2 FT /fasta_file="fasta/c306.tab.seq.00029.out" FT /primary_name="ins1" FT /product="INSIG domain protein" FT /systematic_id="SPCC306.05c" FT /gene="ins1" FT /gene="SPCC306.05c" FT /controlled_curation="term=5 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(416533..416545) FT /colour=6 FT /note="ctaacaaatttag, splice branch and acceptor" FT misc_feature complement(416610..416615) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature complement(416780..416794) FT /colour=6 FT /note="ctaacttatctctag, splice branch and acceptor" FT misc_feature complement(416999..417004) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT CDS complement(join(418476..419319,419382..419473)) FT /GO="aspect=P; term=cell wall biosynthesis (sensu Fungi); FT GOid=GO:0009272; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001143; date=20050509" FT /GO="aspect=C; term=integral to endoplasmic reticulum FT membrane; GOid=GO:0030176; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000001143; date=20050623" FT /GO="aspect=P; term=1,6-beta-glucan biosynthesis; FT GOid=GO:0006078; evidence=ISS; db_xref=PMID:17072883; FT with=UniProtKB:Q875I7_CANAL; date=20060324" FT /colour=7 FT /product="ER membrane protein, BIG1 family (predicted)" FT /systematic_id="SPCC306.06c" FT /gene="SPCC306.06c" FT /controlled_curation="term=predicted N-terminal signal FT sequence; date=19700101" FT /controlled_curation="term=1 predicted transmembrane FT helix; date=19700101" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YHR101C; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_feature complement(419320..419333) FT /colour=6 FT /note="ctaactaaaaacag, splice branch and acceptor" FT misc_feature complement(419376..419381) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT CDS complement(join(420000..420657,420879..421012,421073..421135)) FT /GO="aspect=C; term=nucleolus; GOid=GO:0005730; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001094; FT date=20050623" FT /GO="aspect=P; term=ribosomal large subunit biogenesis; FT GOid=GO:0042273; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001094; date=20050623" FT /colour=7 FT /fasta_file="fasta/c306.tab.seq.05217.out" FT /product="U3 snoRNP-associated protein Cic1/Utp30 family" FT /systematic_id="SPCC306.07c" FT /gene="SPCC306.07c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YHR052W and YKR060W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(420658..420672) FT /colour=6 FT /note="ctaactattttacag, splice branch and acceptor" FT misc_feature complement(420873..420878) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature complement(421013..421030) FT /colour=6 FT /note="cttacaaataatcaatag, splice branch and acceptor" FT misc_feature complement(421067..421072) FT /colour=6 FT /note="gtaaga, splice donor sequence" FT CDS complement(421703..422728) FT /EC_number="1.1.1.37" FT /GO="aspect=P; term=malate metabolism; GOid=GO:0006108; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P17505; FT date=20030619" FT /GO="aspect=P; term=tricarboxylic acid cycle; FT GOid=GO:0006099; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P17505; date=20030619" FT /GO="aspect=F; term=L-malate dehydrogenase activity; FT GOid=GO:0030060; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P17505; date=20030619" FT /GO="aspect=C; term=mitochondrial matrix; GOid=GO:0005759; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P17505; FT date=20040917" FT /colour=7 FT /fasta_file="fasta/c306.tab.seq.00001.out" FT /product="malate dehydrogenase" FT /db_xref="PATH:MAP00020;" FT /db_xref="PATH:MAP00620;" FT /db_xref="PATH:MAP00630;" FT /db_xref="PATH:MAP00710;" FT /db_xref="PATH:MAP00720;" FT /systematic_id="SPCC306.08c" FT /gene="SPCC306.08c" FT /controlled_curation="term=similar to S. cerevisiae FT YKL085W; date=19700101" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070319" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 3'UTR complement(423752..424546) FT /note="mRNA from SPCAP" FT /gene="cap1" FT /gene="cap" FT /gene="SPCC306.09c" FT CDS complement(join(424547..426143,426218..426276)) FT /GO="aspect=F; term=actin binding; GOid=GO:0003779; FT evidence=NAS; db_xref=PMID:17072883; date=20050623" FT /GO="aspect=F; term=cytoskeletal protein binding; FT GOid=GO:0008092; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000005082; date=20050623" FT /GO="aspect=P; term=cytoskeleton organization and FT biogenesis; GOid=GO:0007010; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000005082; date=20050623" FT /GO="aspect=P; term=sporulation (sensu Fungi); FT GOid=GO:0030437; evidence=IMP; db_xref=PMID:1550959; FT date=20051010" FT /GO="aspect=P; term=conjugation with cellular fusion; FT GOid=GO:0000747; evidence=IMP; db_xref=PMID:1550959; FT date=20051010" FT /GO="aspect=P; term=cellular response to starvation; FT GOid=GO:0009267; evidence=IMP; db_xref=PMID:1550959; FT date=20051010" FT /GO="aspect=F; term=adenylate cyclase binding; FT GOid=GO:0008179; evidence=IPI; db_xref=PMID:1550959; FT with=GeneDB_Spombe:SPBC19C7.03; date=20051010" FT /GO="aspect=P; term=regulation of adenylate cyclase FT activity; GOid=GO:0045761; evidence=IGI; FT db_xref=PMID:1550959; with=GeneDB_Spombe:SPBC19C7.03; FT date=20051010" FT /GO="aspect=C; term=actin cortical patch; GOid=GO:0030479; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005082; FT date=20051010" FT /colour=2 FT /fasta_file="fasta/c306.tab.seq.00015.out" FT /primary_name="cap1" FT /product="adenylyl cyclase-associated protein Cap1" FT /synonym="cap" FT /systematic_id="SPCC306.09c" FT /gene="cap1" FT /gene="cap" FT /gene="SPCC306.09c" FT /controlled_curation="term=non-essential; FT db_xref=PMID:1550959; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YNL138W; date=19700101" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070719" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature complement(426144..426162) FT /colour=6 FT /note="ctaacatttactcatatag, splice branch and acceptor" FT intron complement(426144..426217) FT /note="confirmed" FT /gene="cap1" FT /gene="cap" FT /gene="SPCC306.09c" FT misc_feature complement(426212..426217) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT 5'UTR complement(426277..426353) FT /note="mRNA from SPCAP" FT /gene="cap1" FT /gene="cap" FT /gene="SPCC306.09c" FT repeat_region 427168..428990 FT /note="wtf element" FT /systematic_id="wtf8" FT CDS join(427445..427583,427752..427997,428047..428290,428336..428527,428568..428630,428681..428763) FT /controlled_curation="term=wtf element; FT db_xref=PMID:12952871; date=20070223" FT /fasta_file="fasta/c306.tab.seq.05220.out" FT /gene="wtf8" FT /gene="SPCC306.10" FT /obsolete_name="wtf3-pseudo" FT /primary_name="wtf8" FT /product="wtf element Wtf8, pseudo" FT /pseudo FT /systematic_id="SPCC306.10" FT misc_feature 427584..427589 FT /colour=6 FT /note="gtaaga, splice donor sequence" FT misc_feature 427739..427751 FT /colour=6 FT /note="ttaatttaaacag, splice branch and acceptor" FT misc_feature 427998..428003 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 428035..428046 FT /colour=6 FT /note="ctaactcattag, splice branch and acceptor" FT misc_feature 428291..428296 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 428325..428335 FT /colour=6 FT /note="ctaacacgcag, splice branch and acceptor" FT misc_feature 428528..428533 FT /colour=6 FT /note="gtttgt, splice donor sequence" FT misc_feature 428555..428567 FT /colour=6 FT /note="ctaaccgtatcag, splice branch and acceptor" FT misc_feature 428631..428636 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 428668..428680 FT /colour=6 FT /note="cttacccgactag, splice branch and acceptor" FT CDS 430788..431639 FT /colour=8 FT /fasta_file="fasta/c306.tab.seq.05221.out" FT /product="sequence orphan" FT /systematic_id="SPCC306.11" FT /gene="SPCC306.11" FT /controlled_curation="term=sequence orphan; date=19700101" FT /controlled_curation="term=predicted N-terminal signal FT sequence; date=19700101" FT /controlled_curation="term=sequence orphan, FT uncharacterised; date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT misc_feature 432041..432162 FT /note="nominal overlap with cosmid SPCC306 S. pombe FT chromosome 3" FT misc_feature complement(432041..432162) FT /note="nominal overlap with cosmid SPCC4G3, EM:Z97052 S. FT pombe chromosome 3" FT CDS complement(432395..434674) FT /GO="aspect=C; term=gamma-tubulin complex; FT qualifier=colocalizes_with; GOid=GO:0000930; evidence=IDA; FT db_xref=PMID:12134075; date=20040628" FT /GO="aspect=C; term=spindle pole body; GOid=GO:0005816; FT evidence=IC; db_xref=PMID:12134075; from=GO:0000930; FT date=20040628" FT /GO="aspect=P; term=microtubule cytoskeleton organization FT and biogenesis; qualifier=required; GOid=GO:0000226; FT evidence=IMP; db_xref=PMID:12134075; date=20040628" FT /GO="aspect=C; term=equatorial microtubule organizing FT center; GOid=GO:0000923; evidence=IDA; FT db_xref=PMID:12134075; date=20040628" FT /GO="aspect=P; term=interphase microtubule nucleation by FT interphase microtubule organizing center; FT qualifier=same_pathway; GOid=GO:0051415; evidence=IGI; FT db_xref=PMID:17021256; with=GeneDB_Spombe:SPAC806.08c; FT date=20070725" FT /colour=2 FT /fasta_file="fasta/c4G3.tab.seq.00005.out" FT /primary_name="alp16" FT /product="gamma tubulin complex subunit Alp16 (PMID FT 12134075)" FT /systematic_id="SPCC4G3.19" FT /gene="alp16" FT /gene="SPCC4G3.19" FT /controlled_curation="term=overexpression suppresses an FT alp6 ts mutant; date=19700101" FT /controlled_curation="term=overexpression lethal; FT db_xref=PMID:12134075; date=19700101" FT /controlled_curation="term=deletion mutant sensitive to FT microtubule depolymerizing drugs; date=19700101" FT /controlled_curation="term=deletion mutant results in FT abnormally long cytoplasmic microtubules; FT db_xref=PMID:12134075; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=similar to human hGPC6; FT db_xref=PMID:12134075; date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=non-essential; date=20070725" FT /controlled_curation="term=non-essential; date=20070725" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(435937..438423) FT /colour=7 FT /fasta_file="fasta/c4G3.tab.seq.00007.out" FT /product="ribosome biogenesis protein Rix1 (predicted)" FT /systematic_id="SPCC4G3.18" FT /gene="SPCC4G3.18" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=GOC:unpublished; FT with=SGD:S000001240; date=20080620" FT /GO="aspect=P; term=rRNA processing; GOid=GO:0006364; FT evidence=ISS; db_xref=GOC:unpublished; FT with=SGD:S000001240; date=20080620" FT /GO="aspect=P; term=ribosomal large subunit assembly and FT maintenance; GOid=GO:0000027; evidence=ISS; FT db_xref=GOC:unpublished; with=SGD:S000001240; FT date=20080620" FT /GO="aspect=P; term=ribosome export from nucleus; FT GOid=GO:0000054; evidence=ISS; db_xref=GOC:unpublished; FT with=SGD:S000001240; date=20080620" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YHR197W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 3'UTR complement(438715..439063) FT /note="mRNA from AU011801" FT /gene="SPCC4G3.17" FT CDS complement(439064..439660) FT /colour=10 FT /fasta_file="fasta/c4G3.tab.seq.00112.out" FT /product="HD domain" FT /systematic_id="SPCC4G3.17" FT /gene="SPCC4G3.17" FT /controlled_curation="term=metal dependent FT phosphohydrolase; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YGL101W and YBR242W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(440054..441271) FT /colour=10 FT /controlled_curation="term=similar to S. cerevisiae FT YDL036C and YOL066C; qualifier=C_term; date=19700101" FT /controlled_curation="term=tandem fusion protein; FT date=20080326" FT /fasta_file="fasta/c4G3.tab.seq.00002.out" FT /product="CMP/dCMP deaminase family" FT /systematic_id="SPCC4G3.16" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002194; FT date=20050616" FT /GO="aspect=C; term=mitochondrion; GOid=GO:0005739; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002194; FT date=20050616" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002194; FT date=20050616" FT /GO="aspect=F; term=pseudouridine synthase activity; FT GOid=GO:0009982; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002194; date=20050616" FT /GO="aspect=P; term=tRNA pseudouridine synthesis; FT GOid=GO:0031119; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002194; date=20050616" FT /gene="SPCC4G3.16" FT 5'UTR join(441550..441688,441749..442038) FT /note="CRUK ccg.O.1777" FT /gene="SPCC4G3.15c" FT misc_feature 441689..441694 FT /note="gtatgt, splice donor sequence" FT intron 441689..441748 FT /note="confirmed by cDNA" FT misc_feature 441729..441748 FT /note="ttaacatttatatttataag, splice branch and acceptor" FT CDS join(442039..442145,442214..442432,442492..442696) FT /GO="aspect=F; term=3'-5'-exoribonuclease activity; FT qualifier=contributes_to; GOid=GO:0000175; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000002324; date=20050423" FT /GO="aspect=C; term=CCR4-NOT core complex; FT GOid=GO:0030015; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002324; date=20050423" FT /GO="aspect=P; term=regulation of transcription from RNA FT polymerase II promoter; GOid=GO:0006357; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000002324; date=20050423" FT /GO="aspect=P; term=poly(A) tail shortening; FT GOid=GO:0000289; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002324; date=20050423" FT /GO="aspect=P; term=RNA elongation; GOid=GO:0006354; FT evidence=IC; db_xref=PMID:17072883; from=GO:0030014; FT date=20061030" FT /GO="aspect=P; term=transcription initiation; FT GOid=GO:0006352; evidence=IC; db_xref=PMID:17072883; FT from=GO:0030014; date=20061030" FT /colour=7 FT /fasta_file="fasta/c4G3.tab.seq.00001.out" FT /product="CCR4-Not complex subunit Not2 (predicted)" FT /systematic_id="SPCC4G3.15c" FT /gene="SPCC4G3.15c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YDL165W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 442146..442151 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 442200..442213 FT /colour=6 FT /note="ctaaccttttttag, splice branch and acceptor" FT misc_feature 442433..442438 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT intron 442433..442491 FT /colour=2 FT /note="confirmed intron" FT /gene="SPCC4G3.15c" FT misc_feature 442479..442491 FT /colour=6 FT /note="ctaacgtaaacag, splice branch and acceptor" FT 3'UTR 442697..442914 FT /note="mRNA from AU006773" FT /gene="SPCC4G3.15c" FT CDS complement(443170..444756) FT /GO="aspect=F; term=Hsp70 protein binding; FT GOid=GO:0030544; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00226; date=20040413" FT /GO="aspect=P; term=proteolysis; GOid=GO:0006508; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P35191; FT date=20040524" FT /GO="aspect=P; term=protein folding; GOid=GO:0006457; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P35191; FT date=20040524" FT /GO="aspect=C; term=mitochondrial inner membrane; FT GOid=GO:0005743; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P35191; date=20040524" FT /GO="aspect=F; term=unfolded protein binding; FT GOid=GO:0051082; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P35191; date=20040917" FT /colour=7 FT /fasta_file="fasta/c4G3.tab.seq.00115.out" FT /primary_name="mdj1" FT /product="DNAJ domain protein Mdj1 (predicted)" FT /systematic_id="SPCC4G3.14" FT /gene="SPCC4G3.14" FT /gene="mdj1" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=DNAJ domain protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YFL016C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS 445404..446051 FT /GO="aspect=P; term=ER-associated protein catabolism; FT GOid=GO:0030433; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000004877; date=20051107" FT /GO="aspect=C; term=endoplasmic reticulum; FT GOid=GO:0005783; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000004877; date=20051107" FT /GO="aspect=F; term=ubiquitin binding; GOid=GO:0043130; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF02845; FT date=20051107" FT /colour=7 FT /fasta_file="fasta/c4G3.tab.seq.00116.out" FT /note="putative signal sequence at aa 1-20" FT /product="CUE domain protein Cue1/4 family" FT /systematic_id="SPCC4G3.13c" FT /gene="SPCC4G3.13c" FT /controlled_curation="term=conserved fungal protein; FT date=20070428" FT /controlled_curation="term=CUE domain protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YMR264W and YML101C; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT 5'UTR 447034..447263 FT /note="mRNA from AU007931" FT /gene="SPCC4G3.12c" FT CDS 447264..449729 FT /GO="aspect=F; term=ubiquitin-protein ligase activity; FT GOid=GO:0004842; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00097; date=20060726" FT /GO="aspect=P; term=protein ubiquitination; FT GOid=GO:0016567; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00097; date=20060726" FT /GO="aspect=F; term=zinc ion binding; GOid=GO:0008270; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00097; FT date=20060726" FT /colour=7 FT /fasta_file="fasta/c4G3.tab.seq.00117.out" FT /product="ubiquitin-protein ligase E3 (predicted)" FT /systematic_id="SPCC4G3.12c" FT /gene="SPCC4G3.12c" FT /controlled_curation="term=ubiquitin-protein ligase E3; FT date=20060726" FT /controlled_curation="term=zinc finger protein; FT date=20060726" FT /controlled_curation="term=zf-C3HC4 type (RING finger); FT date=20060726" FT /controlled_curation="term=possibly LIM domain interacting FT by similarity to mouse RNF12; date=19700101" FT /controlled_curation="term=conserved eukaryotic family; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT 3'UTR complement(450209..450464) FT /note="mRNA from AU009371" FT /gene="SPCC4G3.11" FT /gene="mug154" FT CDS complement(450465..451415) FT /colour=10 FT /fasta_file="fasta/c4G3.tab.seq.00118.out" FT /product="conserved fungal protein" FT /systematic_id="SPCC4G3.11" FT /primary_name="mug154" FT /gene="SPCC4G3.11" FT /gene="mug154" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YDL089W; date=19700101" FT /controlled_curation="term=4 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=meiotic expression upregulated; FT db_xref=PMID:16303567; date=20080908" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT 5'UTR complement(451416..451666) FT /note="mRNA from AU009325" FT /gene="SPCC4G3.11" FT /gene="mug154" FT CDS 452369..454429 FT /GO="aspect=P; term=nucleotide-excision repair; FT GOid=GO:0006289; evidence=IGI; db_xref=PMID:12807767; FT with=GeneDB_Spombe:SPAC12B10.12c; date=20050307" FT /GO="aspect=P; term=mismatch repair; GOid=GO:0006298; FT evidence=IGI; db_xref=PMID:12807767; FT with=GeneDB_Spombe:SPAC12B10.12c; date=20050307" FT /GO="aspect=C; term=nucleotide-excision repair complex; FT GOid=GO:0000109; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000000964; date=20050307" FT /GO="aspect=F; term=damaged DNA binding; GOid=GO:0003684; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000000964; FT date=20070105" FT /colour=2 FT /fasta_file="fasta/c4G3.tab.seq.00003.out" FT /primary_name="rhp42" FT /product="DNA repair protein Rhp42" FT /synonym="rhp4b" FT /systematic_id="SPCC4G3.10c" FT /gene="rhp42" FT /gene="rhp4b" FT /gene="SPCC4G3.10c" FT /controlled_curation="term=disease associated, cancer; FT date=20060721" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070115" FT /controlled_curation="term=XP-C family; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YER162C and YDR314C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 5'UTR 455068..455302 FT /note="mRNA from AU009261" FT /gene="SPCC4G3.09c" FT /gene="gyp3" FT CDS 455303..457210 FT /GO="aspect=F; term=GTPase activator activity; FT GOid=GO:0005096; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00566; date=20050423" FT /GO="aspect=F; term=Rab GTPase activator activity; FT GOid=GO:0005097; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000005237; date=20050919" FT /GO="aspect=P; term=actin filament organization; FT GOid=GO:0007015; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000005237; date=20050919" FT /GO="aspect=P; term=exocytosis; GOid=GO:0006887; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005237; FT date=20050919" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005237; FT date=20050919" FT /colour=7 FT /fasta_file="fasta/c4G3.tab.seq.00120.out" FT /primary_name="gyp3" FT /product="GTPase activating protein Gyp3" FT /reserved_name="gyp3" FT /systematic_id="SPCC4G3.09c" FT /gene="SPCC4G3.09c" FT /gene="gyp3" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=TBC domain protein; FT date=19700101" FT /controlled_curation="term=target Rab-like GTPase; FT qualifier=predicted; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YNL293W and YOL112W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(458100..459410) FT /GO="aspect=F; term=protein serine/threonine kinase FT activity; GOid=GO:0004674; evidence=ISS; FT db_xref=PMID:17072883; with=Pfam:PF00069; date=20050902" FT /GO="aspect=P; term=protein amino acid phosphorylation; FT GOid=GO:0006468; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00069; date=20050902" FT /GO="aspect=F; term=protein serine/threonine kinase FT activity; GOid=GO:0004674; evidence=TAS; FT db_xref=PMID:15821139; date=20050902" FT /GO="aspect=F; term=ATP binding; GOid=GO:0005524; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00069; FT date=20050902" FT /GO="aspect=P; term=signal transduction; GOid=GO:0007165; FT evidence=IC; db_xref=PMID:17072883; from=GO:0004674; FT date=20070827" FT /colour=2 FT /fasta_file="fasta/c4G3.tab.seq.00121.out" FT /primary_name="psk1" FT /product="serine/threonine protein kinase Psk1" FT /systematic_id="SPCC4G3.08" FT /gene="psk1" FT /gene="SPCC4G3.08" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070428" FT /controlled_curation="term=similar to S. pombe FT SPAC22E12.14C (paralog); date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YBR028C; date=19700101" FT /controlled_curation="term=non-essential; FT db_xref=PMID:15821139; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT 5'UTR complement(459411..459466) FT /note="mRNA from AU007581" FT /gene="psk1" FT /gene="SPCC4G3.08" FT CDS 460117..461502 FT /GO="aspect=C; term=Lsd1/2 complex; GOid=GO:0033193; FT evidence=IDA; db_xref=PMID:17434129; date=20070421" FT /GO="aspect=F; term=nucleosome binding; GOid=GO:0031491; FT qualifier=contributes_to; evidence=IDA; FT db_xref=PMID:17371846; date=20070421" FT /GO="aspect=P; term=histone H3-K9 demethylation; FT GOid=GO:0033169; evidence=IMP; db_xref=PMID:17434129; FT date=20070421" FT /GO="aspect=P; term=response to heat; GOid=GO:0009408; FT evidence=IEP; db_xref=PMID:17371846; date=20070421" FT /colour=2 FT /fasta_file="fasta/c4G3.tab.seq.00122.out" FT /primary_name="phf1" FT /product="PHD finger containing protein Phf1" FT /synonym="swp1" FT /synonym="saf50" FT /systematic_id="SPCC4G3.07c" FT /gene="phf1" FT /gene="SPCC4G3.07c" FT /gene="swp1" FT /gene="saf50" FT /controlled_curation="term=zinc finger protein; FT date=20061218" FT /controlled_curation="term=zf-PHD finger; date=20061218" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20061218" FT /controlled_curation="term=SWm associated Phd1; FT cv=name_derivation; db_xref=PMID:17440621; date=20061218" FT /controlled_curation="term=essential; FT db_xref=PMID:17434129; date=20070421" FT /controlled_curation="term=human retinoblastoma binding FT protein 2-like; date=19700101" FT /controlled_curation="term=similar to S. pombe FT SPAC30D11.08c (paralog); date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS 461951..462385 FT /GO="aspect=F; term=structural constituent of ribosome; FT GOid=GO:0003735; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P36517; date=20040505" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P36517; FT date=20040505" FT /GO="aspect=C; term=mitochondrial large ribosomal subunit; FT GOid=GO:0005762; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P36517; date=20040505" FT /colour=7 FT /fasta_file="fasta/c4G3.tab.seq.00123.out" FT /primary_name="mrpl4" FT /product="mitochondrial ribosomal protein subunit L4" FT /systematic_id="SPCC4G3.06c" FT /gene="SPCC4G3.06c" FT /gene="mrpl4" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YLR439W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS join(462720..462815,462984..464714) FT /GO="aspect=F; term=crossover junction FT endodeoxyribonuclease activity ; GOid=GO:0008821; FT evidence=IDA; db_xref=PMID:11741546; date=20040712" FT /GO="aspect=P; term=postreplication repair; FT GOid=GO:0006301; evidence=TAS; db_xref=PMID:14993467; FT date=20040712" FT /GO="aspect=P; term=meiotic recombination; FT qualifier=required; GOid=GO:0007131; evidence=IMP; FT db_xref=PMID:14704204; date=20040712" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:11073977; FT with=GeneDB_Spombe:SPCC18B5.11c; date=20040712" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IDA; db_xref=PMID:14527419; date=20040712" FT /GO="aspect=C; term=Holliday junction resolvase complex; FT GOid=GO:0048476; evidence=IDA; db_xref=PMID:14527419; FT date=20040712" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=TAS; db_xref=PMID:17072883; date=20040712" FT /GO="aspect=P; term=collapsed replication fork processing; FT GOid=GO:0031297; evidence=TAS; db_xref=PMID:12084712; FT date=20040921" FT /GO="aspect=P; term=meiotic joint molecule formation; FT GOid=GO:0000709; evidence=TAS; db_xref=PMID:15466419; FT date=20041130" FT /GO="aspect=P; term=meiotic DNA repair synthesis; FT GOid=GO:0000711; evidence=IMP; db_xref=PMID:15238514; FT date=20041130" FT /GO="aspect=P; term=DNA replication checkpoint; FT GOid=GO:0000076; evidence=IMP; db_xref=PMID:11073977; FT date=20071228" FT /colour=2 FT /fasta_file="fasta/c4G3.tab.seq.00009.out" FT /primary_name="mus81" FT /product="Holliday junction resolvase subunit Mus81" FT /systematic_id="SPCC4G3.05c" FT /gene="mus81" FT /gene="SPCC4G3.05c" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070428" FT /controlled_curation="term=XP-F family; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YDR386W; date=19700101" FT /controlled_curation="term=essential for viability in the FT absence of Rqh1; date=20080104" FT /controlled_curation="term=Rqh1 supresses lethality of FT deletion mutant; db_xref=PMID:11073977; date=20080104" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS join(464937..465129,465259..465983) FT /GO="aspect=P; term=ubiquinone biosynthesis; FT GOid=GO:0006744; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000004578; date=20040917" FT /GO="aspect=C; term=mitochondrion; GOid=GO:0005739; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000004578; FT date=20040917" FT /GO="aspect=P; term=aerobic respiration; GOid=GO:0009060; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000004578; FT date=20040917" FT /GO="aspect=F;term=2-hexaprenyl-6-methoxy-1,4-benzoquinone FT methyltransferase activity; GOid=GO:0043334; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000004578; date=20050412" FT /colour=7 FT /fasta_file="fasta/c4G3.tab.seq.00125.out" FT /primary_name="coq5" FT /product="C-methytransferase (predicted)" FT /systematic_id="SPCC4G3.04c" FT /gene="coq5" FT /gene="SPCC4G3.04c" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070319" FT /controlled_curation="term=similar to S. cerevisiae FT YML110C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 465130..465135 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 465243..465258 FT /colour=6 FT /note="ctaaccttttaattag, splice branch and acceptor" FT CDS complement(466796..467839) FT /colour=10 FT /fasta_file="fasta/c4G3.tab.seq.00004.out" FT /product="WD repeat protein" FT /systematic_id="SPCC4G3.03" FT /gene="SPCC4G3.03" FT /controlled_curation="term=WD repeat protein; FT date=19700101" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YLR149C; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT CDS complement(join(468839..469135,469245..469331,469396..469497,469626..469688)) FT /EC_number="3.6.1.17" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P49775; FT date=20041016" FT /GO="aspect=C; term=mitochondrion; GOid=GO:0005739; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P49775; FT date=20041016" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P49775; FT date=20041016" FT /GO="aspect=F; term=bis(5'-nucleosyl)-tetraphosphatase FT (asymmetrical) activity; GOid=GO:0004081; evidence=IMP; FT db_xref=PMID:8554540; date=20041016" FT /GO="aspect=P; term=adenosine catabolism; GOid=GO:0006154; FT evidence=IMP; db_xref=PMID:10970777; date=20050423" FT /colour=2 FT /fasta_file="fasta/c4G3.tab.seq.00127.out" FT /primary_name="aph1" FT /product="bis(5'-nucleosidyl)-tetraphosphatase" FT /systematic_id="SPCC4G3.02" FT /gene="aph1" FT /gene="SPCC4G3.02" FT /controlled_curation="term=disease associated, cancer; FT date=20060724" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070115" FT /controlled_curation="term=HIT family; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YDR305C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(469136..469147) FT /colour=6 FT /note="ttaactcaatag, splice branch and acceptor" FT misc_feature complement(469239..469244) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature complement(469332..469346) FT /colour=6 FT /note="ctaatgaaaacttag, splice branch and acceptor" FT misc_feature complement(469390..469395) FT /colour=6 FT /note="gtagga, splice donor sequence" FT misc_feature complement(469498..469510) FT /colour=6 FT /note="ctaacgattttag, splice branch and acceptor" FT misc_feature complement(469620..469625) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT CDS complement(470668..472068) FT /EC_number="1.1.1.95" FT /GO="aspect=P; term=L-serine biosynthesis; FT GOid=GO:0006564; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P40054; date=20030611" FT /GO="aspect=F; term=phosphoglycerate dehydrogenase FT activity; GOid=GO:0004617; evidence=ISS; FT db_xref=PMID:17072883; with=SPTR:P40054; date=20030611" FT /colour=7 FT /fasta_file="fasta/c4G3.tab.seq.00128.out" FT /fasta_file="fasta/c364.tab.seq.00008.out" FT /product="D-3 phosphoglycerate dehydrogenase (predicted)" FT /db_xref="PATH:MAP00260;" FT /synonym="SPCC4G3.01" FT /systematic_id="SPCC364.07" FT /gene="SPCC4G3.01" FT /gene="SPCC364.07" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YER081W and YIL074C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 471824..473974 FT /note="nominal overlap with cosmid SPCC364 S. pombe FT chromosome 3" FT misc_feature complement(471824..473974) FT /note="nominal overlap with cosmid SPCC4G3, EM:Z97052 FT S.pombe chromosome 3" FT tRNA complement(473199..473280) FT /gene="SPCTRNASER.07" FT /note="tRNA Ser anticodon AGA" FT /note="tRNA Ser anticodon AGA, Cove score 59.19" FT /product="tRNA Serine" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=RCA; db_xref=PMID:17072883; date=20070711" FT /GO="aspect=P; term=translational elongation; FT GOid=GO:0006414; evidence=RCA; db_xref=PMID:17072883; FT date=20070711" FT /GO="aspect=F; term=AGA codon-amino acid adaptor activity; FT GOid=GO:0033447; evidence=RCA; db_xref=PMID:17072883; FT date=20070711" FT /systematic_id="SPCTRNASER.07" FT CDS complement(474390..475571) FT /GO="aspect=C term=nucleus; GOid=GO:0005634; evidence=IC; FT db_xref=PMID:17072883; from=GO:0006334; date=20040907" FT /GO="aspect=C; term=chromatin; GOid=GO:0000785; FT evidence=IC; db_xref=PMID:17072883; from=GO:0042393; FT date=20040907" FT /GO="aspect=F; term=histone binding; GOid=GO:0042393; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001756; FT date=20040907" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:17510629; FT with=GeneDB_Spombe:SPAC1783.05; date=20080827" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:17510629; FT with=GeneDB_Spombe:SPAC3G6.01; date=20080827" FT /GO="aspect=P; term=DNA-independent nucleosome assembly; FT GOid=GO: SF 2076333; evidence=IDA; db_xref=PMID:17510629; FT date=20080827" FT /GO="aspect=P; term=nucleosome assembly; GOid=GO:0006334; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001756; FT date=20040907" FT /GO="aspect=P; term=protein import into nucleus; FT GOid=GO:0006606; evidence=ISS; db_xref=GOC:unpublished; FT with=SGD:S000001756; date=20080827" FT /GO="aspect=P; term=transcription from RNA polymerase II FT promoter; GOid=GO:0006366; evidence=NAS; FT db_xref=GOC:unpublished; date=20080827" FT /GO="aspect=P; term=traversing start control point of FT mitotic cell cycle; GOid=GO:0007089; evidence=IMP; FT db_xref=PMID:1847425; date=20080827" FT /GO="aspect=P; term=traversing start control point of FT mitotic cell cycle; qualifier=synthetic_rescue; FT GOid=GO:0007089; evidence=IGI; db_xref=PMID:1847425; FT with=GeneDB_Spombe:SPCC18B5.11c; date=20080827" FT /colour=2 FT /fasta_file="fasta/c364.tab.seq.00009.out" FT /fasta_file="fasta/c2D10.tab.seq.00006.out" FT /primary_name="nap1" FT /product="nucleosome assembly protein" FT /systematic_id="SPCC364.06" FT /gene="SPCC364.06" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YKR048C; date=19700101" FT /controlled_curation="term=similar to S. pombe FT SPBC2D10.11c (paralog); date=19700101" FT /controlled_curation="term=NAP histone chaperone family; FT date=20070618" FT /controlled_curation="term=histone chaperone; FT date=20080827" FT /controlled_curation="term=overlapping geneome wide FT occupancy in coding regions Nap1/Hrp1/Hrp3; FT db_xref=PMID:17510629; date=20080827" FT /controlled_curation="term=overlapping geneome wide FT occupancy in promoters Nap1/Hrp1/Hrp3; FT db_xref=PMID:17510629; date=20080827" FT /controlled_curation="term=CHIP-CHIP data for deletion; FT db_xref=PMID:17510629; date=20080827" FT /controlled_curation="term=non-essential; FT db_xref=PMID:18474252; date=20080827" FT /controlled_curation="term=deletion temperature sensitive; FT db_xref=PMID:18474252; date=20080827" FT /controlled_curation="term=deletion mutant less sensitive FT to benomyl; db_xref=PMID:18474252; date=20080827" FT /controlled_curation="term=deletion requires a functional FT replication checkpoint; db_xref=PMID:18474252; FT date=20080827" FT /controlled_curation="term=deletion activates replication FT checkpoint; db_xref=PMID:18474252; date=20080827" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(join(476046..478343,478400..478587,478640..478745,478800..478864,478913..478988)) FT /GO="aspect=P; term=protein targeting to vacuole; FT GOid=GO:0006623; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002903; date=20050722" FT /GO="aspect=P; term=intracellular protein transport; FT GOid=GO:0006886; evidence=IC; db_xref=PMID:17072883; FT from=GO:0006623; date=20050722" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002903; FT date=20050722" FT /GO="aspect=F; term=small GTPase regulator activity; FT GOid=GO:0005083; evidence=ISS; db_xref=PMID:17072883; FT with=InterPro:IPR001180; date=20050729" FT /colour=7 FT /fasta_file="fasta/c364.tab.seq.00010.out" FT /primary_name="vps3" FT /product="GTPase regulator Vps3 (predicted)" FT /systematic_id="SPCC364.05" FT /gene="vps3" FT /gene="SPCC364.05" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070428" FT /controlled_curation="term=CNH domain; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YDR495C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature complement(478344..478362) FT /colour=6 FT /note="ctaattaacaataaacaag, splice branch and acceptor" FT misc_feature complement(478394..478399) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature complement(478588..478600) FT /colour=6 FT /note="ttaacggtggtag, splice branch and acceptor" FT misc_feature complement(478634..478639) FT /colour=6 FT /note="gtgtgg, splice donor sequence" FT misc_feature complement(478746..478761) FT /colour=6 FT /note="ttaacacgcgtattag, splice branch and acceptor" FT misc_feature complement(478794..478799) FT /colour=6 FT /note="gtttgt, splice donor sequence" FT misc_feature complement(478865..478885) FT /colour=6 FT /note="ctaactatttgatttttttag, splice branch and acceptor" FT misc_feature complement(478907..478912) FT /colour=6 FT /note="gtaagg, splice donor sequence" FT CDS join(479727..479778,479836..479946,480013..481751) FT /GO="aspect=C; term=Golgi membrane; GOid=GO:0000139; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001662; FT date=20050112" FT /GO="aspect=P; term=Golgi vesicle transport; FT GOid=GO:0048193; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001662; date=20060925" FT /colour=7 FT /fasta_file="fasta/c364.tab.seq.00015.out" FT /product="CASP family protein" FT /systematic_id="SPCC364.04c" FT /gene="SPCC364.04c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=1 predicted transmembrane FT helix; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YKL179C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 479779..479784 FT /colour=6 FT /note="gttcgt, splice donor sequence" FT intron 479779..479835 FT /note="confirmed by mRNA" FT /gene="SPCC364.04c" FT misc_feature 479819..479835 FT /colour=6 FT /note="ctaacgtgagataatag, splice branch and acceptor" FT misc_feature 479947..479952 FT /colour=6 FT /note="gtatgg, splice donor sequence" FT intron 479947..480012 FT /note="confirmed" FT /gene="SPCC364.04c" FT misc_feature 479993..480012 FT /colour=6 FT /note="ctaatattgttaatatacag, splice branch and acceptor" FT CDS complement(482235..482798) FT /GO="aspect=C; term=cytosolic large ribosomal subunit FT (sensu Eukaryota); GOid=GO:0022625; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000001663; date=20061026" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000001663; FT date=20061026" FT /GO="aspect=F; term=structural constituent of ribosome; FT GOid=GO:0003735; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001663; date=20061026" FT /colour=7 FT /fasta_file="fasta/c364.tab.seq.00012.out" FT /primary_name="rpl1702" FT /product="60S ribosomal protein L17" FT /synonym="rpl17-2" FT /synonym="rpl17" FT /systematic_id="SPCC364.03" FT /gene="rpl1702" FT /gene="rpl17-2" FT /gene="rpl17" FT /gene="SPCC364.03" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070425" FT /controlled_curation="term=similar to S. cerevisiae FT YKL180W and YJL177W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS 483585..484739 FT /GO="aspect=C; term=nuclear membrane; FT qualifier=colocalizes_with; GOid=GO:0031965; evidence=TAS; FT db_xref=PMID:11751918; date=20040915" FT /GO="aspect=F; term=protein heterodimerization activity; FT GOid=GO:0046982; evidence=IPI; db_xref=PMID:11751918; FT with=GeneDB_Spombe:SPBC365.12c; date=20040915" FT /GO="aspect=P; term=cellular response to stress; FT GOid=GO:0033554; evidence=IMP; db_xref=PMID:11751918; FT date=20040915" FT /colour=2 FT /fasta_file="fasta/c364.tab.seq.00017.out" FT /primary_name="bis1" FT /product="stress response protein Bis1" FT /systematic_id="SPCC364.02c" FT /gene="bis1" FT /gene="SPCC364.02c" FT /controlled_curation="term=ES2 nuclear protein family; FT date=19700101" FT /controlled_curation="term=disease associated, DiGeorge FT syndrome; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(join(484965..485924,485977..485979)) FT /colour=8 FT /fasta_file="fasta/c364.tab.seq.00016.out" FT /note="splicing possibly incorrect, non-consensus branch, FT may use internal Met at position 1166" FT /product="sequence orphan" FT /systematic_id="SPCC364.01" FT /gene="SPCC364.01" FT /controlled_curation="term=sequence orphan; date=19700101" FT /controlled_curation="term=sequence orphan, FT uncharacterised; date=20081110" FT /controlled_curation="term=identified in S. pombe only; FT date=20081110" FT misc_feature complement(485925..485939) FT /colour=6 FT /note="cttatactttaatag, splice branch and acceptor" FT misc_feature complement(485971..485976) FT /colour=6 FT /note="gtaaga, splice donor sequence" FT LTR complement(486575..486925) FT /note="Tf2-type LTR" FT /note="Tf1-type LTR" FT misc_feature complement(486658..486822) FT /note="nominal overlap with cosmid SPCC364 and cosmid FT SPCC970" FT CDS join(487167..487305,487473..487718,487768..488046,488092..488283,488324..488386,488437..488519) FT /controlled_curation="term=wtf element; FT db_xref=PMID:12952871; date=20070223" FT /fasta_file="fasta/c970.tab.seq.00029.out" FT /obsolete_name="wtf2" FT /primary_name="wtf9" FT /product="wtf element Wtf9" FT /systematic_id="SPCC970.11c" FT /gene="SPCC970.11c" FT /gene="wtf9" FT misc_feature 487306..487311 FT /colour=6 FT /note="gtaaga, splice donor sequence" FT misc_feature 487460..487472 FT /colour=6 FT /note="ttaatttaaacag, splice branch and acceptor" FT misc_feature 487719..487724 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 487756..487767 FT /colour=6 FT /note="ctaactcatcag, splice branch and acceptor" FT misc_feature 488047..488052 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT intron 488047..488091 FT /note="intron confirmed by EST" FT /gene="SPCC970.11c" FT /gene="wtf9" FT misc_feature 488074..488091 FT /colour=6 FT /note="ctgaccgctaacacgcag, splice branch and acceptor" FT misc_feature 488284..488289 FT /colour=6 FT /note="gtttgt, splice donor sequence" FT intron 488284..488323 FT /note="intron confirmed by EST" FT /gene="SPCC970.11c" FT /gene="wtf9" FT misc_feature 488311..488323 FT /colour=6 FT /note="ctaaccgtatcag, splice branch and acceptor" FT misc_feature 488387..488392 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT intron 488387..488436 FT /note="intron confirmed by EST" FT /gene="SPCC970.11c" FT /gene="wtf9" FT misc_feature 488424..488436 FT /colour=6 FT /note="cttacccgactag, splice branch and acceptor" FT LTR complement(489072..489396) FT /note="Tf2-type LTR" FT LTR 489375..489697 FT /note="Tf2-type LTR" FT CDS join(490068..490157,490222..492174) FT /GO="aspect=C; term=HULC complex; GOid=GO:0033503; FT evidence=IDA; db_xref=PMID:17363370; date=20070716" FT /GO="aspect=C; term=HULC complex; GOid=GO:0033503; FT evidence=IDA; db_xref=PMID:17374714; date=20070716" FT /GO="aspect=C; term=centric heterochromatin; FT GOid=GO:0005721; evidence=IDA; db_xref=PMID:17363370; FT date=20070716" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000002232; FT date=20050722" FT /GO="aspect=F; term=ubiquitin-protein ligase activity; FT GOid=GO:0004842; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000002232; date=20050722" FT /GO="aspect=F; term=ubiquitin-protein ligase activity; FT qualifier=contributes_to|function_of_complex; FT GOid=GO:0004842; evidence=IDA; db_xref=PMID:17363370; FT date=20050415" FT /GO="aspect=F; term=zinc ion binding; GOid=GO:0008270; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00097; FT date=20060726" FT /GO="aspect=P; term=DNA replication-independent nucleosome FT assembly; GOid=GO:0006336; evidence=TAS; FT db_xref=PMID:17374714; date=20070716" FT /GO="aspect=P; term=chromatin assembly; GOid=GO:0031497; FT evidence=IMP; db_xref=PMID:17374714; date=20070716" FT /GO="aspect=P; term=histone H2B ubiquitination; FT residue=K120; GOid=GO:0033523; evidence=IDA; FT db_xref=PMID:17374714; date=20070716" FT /GO="aspect=P; term=histone H2B ubiquitination; FT residue=K120; GOid=GO:0033523; evidence=IMP; FT db_xref=PMID:17363370; date=20070716" FT /GO="aspect=P; term=histone H3-K4 methylation; FT GOid=GO:0051568; evidence=IMP; db_xref=PMID:17374714; FT date=20070716" FT /GO="aspect=P; term=regulation of transcription from RNA FT polymerase II promoter; GOid=GO:0006357; evidence=IEP; FT db_xref=PMID:17374714; date=20080214" FT /colour=2 FT /fasta_file="fasta/c970.tab.seq.00030.out" FT /primary_name="brl2" FT /synonym="rfp1" FT /product="ubiquitin-protein ligase E3 Brl2" FT /systematic_id="SPCC970.10c" FT /gene="SPCC970.10c" FT /gene="brl2" FT /gene="rfp1" FT /controlled_curation="term=zinc finger protein; FT date=20060726" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070428" FT /controlled_curation="term=zf-C3HC4 type (RING finger); FT date=20060726" FT /controlled_curation="term=similar to S. pombe FT SPCC1919.15; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YDL074C; date=19700101" FT /controlled_curation="term=the chromatin assembly function FT of H2Bub is independent of H3K4 methylation; FT db_xref=PMID:17374714; date=20070716" FT /controlled_curation="term=the chromatin silencing FT function of H2Bub is independent of H3K4 methylation; FT db_xref=PMID:17363370; date=20070716" FT /controlled_curation="term=RING finger protein 1; FT cv=name_derivation; db_xref=PMID:17363370; date=20070716" FT /controlled_curation="term=BRE1-like 2; FT cv=name_derivation; db_xref=PMID:17374714; date=20070716" FT /controlled_curation="term=ubiquitin-protein ligase E3; FT date=20080528" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature 490158..490163 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 490207..490221 FT /colour=6 FT /note="ctaactctgttaaag, splice branch and acceptor" FT CDS complement(join(492370..492784,492832..493549,493600..493738,493780..493954,494003..495612,495673..495722,495767..495926)) FT /GO="aspect=C; term=cell cortex of cell tip; FT GOid=GO:0051285; evidence=IDA; db_xref=PMID:11854409; FT date=20050121" FT /GO="aspect=C; term=contractile ring; FT qualifier=colocalizes_with|during_early_mitosis; FT GOid=GO:0005826; evidence=IDA; db_xref=PMID:11854409; FT date=20050121" FT /GO="aspect=C; term=exocyst; GOid=GO:0000145; FT evidence=IDA; db_xref=PMID:11854409; date=20041107" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:11854409; FT with=GeneDB_Spombe:SPAC13F5.06c; date=20041107" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:11854409; FT with=GeneDB_Spombe:SPBC106.20; date=20041107" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:11854409; FT with=GeneDB_Spombe:SPCC1235.10c; date=20041107" FT /GO="aspect=P; term=cell separation during cytokinesis; FT GOid=GO:0000920; evidence=IMP; db_xref=PMID:11854409; FT date=20041107" FT /GO="aspect=P; term=exocytosis; GOid=GO:0006887; FT evidence=IC; db_xref=GOC:unpublished; from=GO:0000145; FT date=20041107" FT /GO="aspect=P; term=exocytosis; GOid=GO:0006887; FT evidence=IMP; db_xref=PMID:11854409; date=20041107" FT /GO="aspect=P; term=intracellular protein transport; FT GOid=GO:0006886; evidence=IC; db_xref=PMID:17072883; FT from=GO:0006887; date=20050121" FT /GO="aspect=P; term=endocytosis; FT qualifier=at_cell_division_site; GOid=GO:0006897; FT evidence=IMP; db_xref=PMID:16141239; date=20050913" FT /GO="aspect=P; term=vesicle docking during exocytosis; FT GOid=GO:0006904; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000006259; date=20070428" FT /colour=2 FT /fasta_file="fasta/c970.tab.seq.00031.out" FT /primary_name="sec8" FT /product="exocyst complex subunit Sec8" FT /systematic_id="SPCC970.09" FT /gene="sec8" FT /gene="SPCC970.09" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=essential; FT db_xref=PMID:11854409; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YPR055W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(492785..492798) FT /colour=6 FT /note="ctaactttttatag, splice branch and acceptor" FT misc_feature complement(492826..492831) FT /colour=6 FT /note="gtaaat, splice donor sequence" FT misc_feature complement(493550..493563) FT /colour=6 FT /note="cttaccctttatag, splice branch and acceptor" FT misc_feature complement(493594..493599) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature complement(493739..493754) FT /colour=6 FT /note="ttaacgttaattttag, splice branch and acceptor" FT misc_feature complement(493774..493779) FT /colour=6 FT /note="gtatag, splice donor sequence" FT misc_feature complement(493955..493969) FT /colour=6 FT /note="ctaacaaaaatttag, splice branch and acceptor" FT misc_feature complement(493997..494002) FT /colour=6 FT /note="gtacgt, splice donor sequence" FT misc_feature complement(495613..495628) FT /colour=6 FT /note="ctaacgaatggttaag, splice branch and acceptor" FT misc_feature complement(495667..495672) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature complement(495723..495738) FT /colour=6 FT /note="ttaacctttatgctag, splice branch and acceptor" FT misc_feature complement(495761..495766) FT /colour=6 FT /note="gtaagg, splice donor sequence" FT CDS complement(496863..499766) FT /GO="aspect=F; term=inositol 1,3,4,5,6-pentakisphosphate FT kinase activity; GOid=GO:0000827; evidence=ISS; FT db_xref=GOC:unpublished; with=SGD:S000002424; FT date=20080123" FT /GO="aspect=F; term=inositol heptakisphosphate kinase FT activity; GOid=GO:0000829; evidence=ISS; FT db_xref=GOC:unpublished; with=SGD:S000002424; FT date=20080123" FT /GO="aspect=P; term=inositol and derivative FT phosphorylation; GOid=GO:0046853; evidence=NAS; FT db_xref=PMID:17072883; date=20061009" FT /GO="aspect=P; term=inositol phosphate biosynthetic FT process; GOid=GO:0032958; evidence=ISS; FT db_xref=GOC:unpublished; with=SGD:S000002424; FT date=20080123" FT /GO="aspect=P; term=inositol phosphate-mediated signaling; FT GOid=GO:0048016; evidence=NAS; db_xref=PMID:17072883; FT date=20061009" FT /GO="aspect=P; term=polyphosphate metabolism; FT GOid=GO:0006797; evidence=NAS; db_xref=PMID:15866881; FT date=20050506" FT /colour=7 FT /fasta_file="fasta/c970.tab.seq.00032.out" FT /product="inositol polyphosphate kinase (predicted)" FT /systematic_id="SPCC970.08" FT /gene="SPCC970.08" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070428" FT /controlled_curation="term=similar to S. cerevisiae FT YDR017C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT LTR 499951..500308 FT /note="Tf1-type LTR" FT LTR complement(500370..500717) FT /note="Tf1-type LTR" FT CDS 500859..502769 FT /GO="aspect=C; term=Rik1-E3 ubiquitin ligase complex; FT GOid=GO:0043494; evidence=IDA; db_xref=PMID:16024659; FT date=20050901" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=IDA; db_xref=PMID:16040243; date=20050901" FT /GO="aspect=C; term=mating-type region heterochromatin; FT GOid=GO:0031934; evidence=TAS; db_xref=PMID:16157682; FT date=20050920" FT /GO="aspect=C; term=nuclear centric heterochromatin; FT GOid=GO:0031618; evidence=IC; db_xref=PMID:17072883; FT from=GO:0043494; date=20051018" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=IDA; db_xref=PMID:16040243; date=20050901" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:16157682; FT with=GeneDB_Spombe:SPAC3A11.08; date=20050920" FT /GO="aspect=P; term=chromatin silencing at centromere; FT GOid=GO:0030702; evidence=IMP; db_xref=PMID:16024659; FT date=20050901" FT /GO="aspect=P; term=chromatin silencing at silent FT mating-type cassette; GOid=GO:0030466; evidence=IMP; FT db_xref=PMID:16157682; date=20050920" FT /GO="aspect=P; term=chromatin silencing at telomere; FT GOid=GO:0006348; evidence=IMP; db_xref=PMID:16157682; FT date=20050920" FT /GO="aspect=P; term=meiotic chromosome segregation; FT GOid=GO:0045132; evidence=IMP; db_xref=PMID:16040243; FT date=20050901" FT /GO="aspect=P; term=meiotic sister chromatid cohesion, FT centromeric; GOid=GO:0051754; evidence=IMP; FT db_xref=PMID:16040243; date=20050901" FT /GO="aspect=P; term=mitotic sister chromatid segregation; FT GOid=GO:0000070; evidence=IMP; db_xref=PMID:16040243; FT date=20050901" FT /GO="aspect=P; term=negative regulation of histone H3-K4 FT methylation; GOid=GO:0051572; evidence=IMP; FT db_xref=PMID:16024659; date=20050901" FT /GO="aspect=P; term=positive regulation of histone H3-K9 FT methylation; GOid=GO:0051574; evidence=IMP; FT db_xref=PMID:16024659; date=20050901" FT /GO="aspect=P; term=protein localization; FT qualifier=localization_dependency; GOid=GO:0008104; FT evidence=IGI; db_xref=PMID:16040243; FT with=GeneDB_Spombe:SPAC664.01c; date=20050901" FT /GO="aspect=P; term=protein localization; FT qualifier=localization_dependency; GOid=GO:0008104; FT evidence=IGI; db_xref=PMID:16040243; FT with=GeneDB_Spombe:SPCC613.12c; date=20050901" FT /GO="aspect=P; term=regulation of mating type switching; FT GOid=GO:0031494; evidence=IMP; db_xref=PMID:16157682; FT date=20050920" FT /GO="aspect=P; term=small RNA-mediated chromatin FT silencing; GOid=GO:0031048; evidence=IMP; FT db_xref=PMID:16040243; date=20050901" FT /colour=2 FT /controlled_curation="term=basic zinc finger; FT qualifier=predicted; db_xref=PMID:16024659; date=19700101" FT /controlled_curation="term=non-essential; FT db_xref=PMID:16040243; date=19700101" FT /controlled_curation="term=no apparent orthologs; FT date=19700101" FT /fasta_file="fasta/c970.tab.seq.00004.out" FT /fasta_file="%uniprot:fasta/chromosome3.contig.seq.04119.ou FT t" FT /note="cullin-associated methyltransferase complex subunit FT Cmc2" FT /note="Rik1-associated factor Raf2" FT /note="delocalization of swi6 Dos2" FT /primary_name="raf2" FT /product="Rik1-associated factor Raf2" FT /synonym="dos2" FT /synonym="cmc2" FT /synonym="clr7" FT /systematic_id="SPCC970.07c" FT /gene="raf2" FT /gene="dos2" FT /gene="cmc2" FT /gene="clr7" FT /gene="SPCC970.07c" FT CDS complement(503617..504525) FT /GO="aspect=C; term=endoplasmic reticulum membrane; FT GOid=GO:0005789; evidence=IC; db_xref=PMID:17072883; FT from=GO:0030134; date=20050715" FT /GO="aspect=P; term=ER to Golgi vesicle-mediated FT transport; GOid=GO:0006888; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000003516; date=20050715" FT /GO="aspect=C; term=ER to Golgi transport vesicle; FT GOid=GO:0030134; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000003516; date=20050715" FT /colour=7 FT /fasta_file="fasta/c970.tab.seq.00034.out" FT /product="cargo receptor for soluble proteins (predicted)" FT /systematic_id="SPCC970.06" FT /gene="SPCC970.06" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070428" FT /controlled_curation="term=surfeit locus (SURF40 family); FT date=19700101" FT /controlled_curation="term=7 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YGR284C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(join(506415..506492,506654..506875)) FT /GO="aspect=C; term=cytosolic large ribosomal subunit FT (sensu Eukaryota); GOid=GO:0022625; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000004807; date=20061026" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000004807; FT date=20061026" FT /GO="aspect=F; term=structural constituent of ribosome; FT GOid=GO:0003735; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000004807; date=20061026" FT /colour=2 FT /fasta_file="fasta/c970.tab.seq.00035.out" FT /primary_name="rpl3601" FT /product="60S ribosomal protein L36" FT /synonym="rpl36-1" FT /systematic_id="SPCC970.05" FT /gene="rpl3601" FT /gene="rpl36-1" FT /gene="SPCC970.05" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070425" FT /controlled_curation="term=similar to S. cerevisiae FT YMR194W and YPL249C-A; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(506493..506507) FT /colour=6 FT /note="ctaacaactttttag, splice branch and acceptor" FT intron complement(506493..506653) FT /note="confirmed intron" FT /gene="rpl3601" FT /gene="rpl36-1" FT /gene="SPCC970.05" FT misc_feature complement(506648..506653) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT CDS join(508053..508320,508777..508870,508936..509308) FT /GO="aspect=C; term=cell cortex; GOid=GO:0005938; FT evidence=IDA; db_xref=PMID:12456722; date=20060103" FT /GO="aspect=C; term=cell division site; FT qualifier=during_late_anaphase; GOid=GO:0032153; FT evidence=IDA; db_xref=PMID:12456722; date=20060103" FT /GO="aspect=C; term=cell division site; FT qualifier=during_telophase; GOid=GO:0032153; evidence=IDA; FT db_xref=PMID:12456722; date=20060103" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT qualifier=throughout_cell_cycle; evidence=IDA; FT db_xref=PMID:12456722; date=20041107" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:12456722; FT with=GeneDB_Spombe:SPAC821.12; date=20041107" FT /GO="aspect=F; term=protein kinase activator activity; FT GOid=GO:0030295; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001859; date=20041107" FT /GO="aspect=P; term=bipolar cell growth; FT qualifier=regulates; GOid=GO:0042815; evidence=IMP; FT db_xref=PMID:12456722; date=20041107" FT /GO="aspect=P; term=establishment and/or maintenance of FT cell polarity; qualifier=regulates; GOid=GO:0007163; FT evidence=IMP; db_xref=PMID:12456722; date=20041107" FT /GO="aspect=P; term=protein amino acid phosphorylation; FT GOid=GO:0006468; evidence=IC; db_xref=PMID:17072883; FT from=GO:0030295; date=20060103" FT /GO="aspect=P; term=regulation of mitotic cell cycle; FT qualifier=required; GOid=GO:0007346; evidence=IMP; FT db_xref=PMID:12456722; date=20041107" FT /colour=2 FT /fasta_file="fasta/c970.tab.seq.00001.out" FT /primary_name="mob2" FT /product="protein kinase activator Mob2" FT /systematic_id="SPCC970.04c" FT /gene="mob2" FT /gene="SPCC970.04c" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070428" FT /controlled_curation="term=Mob1/phocein family; FT date=19700101" FT /controlled_curation="term=phosphoprotein; FT qualifier=predicted; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YFL034C-B; date=19700101" FT /controlled_curation="term=essential; FT db_xref=PMID:12456722; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature 508321..508326 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 508758..508776 FT /colour=6 FT /note="ctaactcttttcattttag, splice branch and acceptor" FT misc_feature 508871..508876 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 508914..508935 FT /colour=6 FT /note="ctaacttactcttttattatag, splice branch and acceptor" FT CDS complement(510435..511340) FT /EC_number="1.6.2.2" FT /GO="aspect=C; term=endoplasmic reticulum membrane; FT GOid=GO:0005789; evidence=IC; db_xref=PMID:17072883; FT from=GO:0005783|GO:0016020; date=20070105" FT /GO="aspect=F; term=FAD binding; GOid=GO:0050660; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00970; FT date=20070105" FT /GO="aspect=F; term=NAD binding; GOid=GO:0051287; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00175; FT date=20070105" FT /GO="aspect=F; term=cytochrome-b5 reductase activity; FT GOid=GO:0004128; evidence=ISS; db_xref=PMID:17072883; FT with=InterPro:IPR012260; date=20070105" FT /GO="aspect=P; term=vesicle-mediated transport; FT GOid=GO:0016192; evidence=IC; db_xref=PMID:17072883; FT from=GO:0005789; date=20070125" FT /GO="aspect=P; term=intracellular protein transport; FT GOid=GO:0006886; evidence=ISS; db_xref=GOC:unpublished; FT with=SGD:S000004594; date=20080811" FT /colour=7 FT /fasta_file="fasta/c970.tab.seq.00037.out" FT /product="cytochrome b5 reductase (predicted)" FT /systematic_id="SPCC970.03" FT /gene="SPCC970.03" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070428" FT /controlled_curation="term=2 predicted transmembrane FT helices; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YIL043C and YML125C and YML087C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT CDS complement(join(512043..512275,512326..512635,512709..513281,513328..513540)) FT /GO="aspect=C; term=anchored to external side of plasma FT membrane; GOid=GO:0031362; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000001529; date=20051012" FT /GO="aspect=F; term=mannan endo-1,6-alpha-mannosidase FT activity; GOid=GO:0008496; evidence=ISS; FT db_xref=PMID:17072883; with=Pfam:PF03663; date=20051012" FT /GO="aspect=P; term=cell wall biosynthesis (sensu Fungi); FT GOid=GO:0009272; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001529; date=20051012" FT /GO="aspect=P; term=cellular oligosaccharide catabolism; FT GOid=GO:0051692; evidence=IC; db_xref=PMID:17072883; FT from=GO:0008496; date=20051012" FT /colour=7 FT /fasta_file="fasta/c970.tab.seq.00038.out" FT /product="mannan endo-1,6-alpha-mannosidase (predicted)" FT /systematic_id="SPCC970.02" FT /gene="SPCC970.02" FT /controlled_curation="term=conserved fungal family; FT date=20070428" FT /controlled_curation="term=glycosyl hydrolase family 76; FT date=19700101" FT /controlled_curation="term=predicted N-terminal signal FT sequence; date=19700101" FT /controlled_curation="term=GPI anchored protein; FT qualifier=predicted; db_xref=PMID:12845604; date=19700101" FT /controlled_curation="term=glycoprotein; FT qualifier=predicted; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YKL046C and YMR238W; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_feature complement(512276..512290) FT /colour=6 FT /note="ctaactttataatag, splice branch and acceptor" FT misc_feature complement(512320..512325) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature complement(512636..512651) FT /colour=6 FT /note="ctaacagtttcaccag, splice branch and acceptor" FT misc_feature complement(512703..512708) FT /colour=6 FT /note="gtacgt, splice donor sequence" FT misc_feature complement(513282..513300) FT /colour=6 FT /note="ttaacaacaatggctttag, splice branch and acceptor" FT misc_feature complement(513322..513327) FT /colour=6 FT /note="gtacgt, splice donor sequence" FT CDS complement(join(514122..514251,514293..514328,514377..514463,514511..514571,514617..514770)) FT /GO="aspect=C; term=Mis6-Sim4 complex; GOid=GO:0031511; FT evidence=TAS; db_xref=PMID:15897182; date=20050614" FT /GO="aspect=C; term=condensed chromosome kinetochore; FT qualifier=colocalizes_with|during_interphase; FT GOid=GO:0000777; evidence=IDA; db_xref=PMID:15369671; FT date=20041105" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=NAS; db_xref=PMID:17072883; date=20051129" FT /GO="aspect=F; term=protein binding; GOid=GO:0005515; FT evidence=IPI; db_xref=PMID:15369671; FT with=GeneDB_Spombe:SPCC1672.10; date=20041105" FT /GO="aspect=P; term=chromatin remodeling at centromere; FT GOid=GO:0031055; evidence=IMP; db_xref=PMID:15369671; FT date=20041105" FT /GO="aspect=P; term=chromosome segregation; FT GOid=GO:0007059; evidence=IMP; db_xref=PMID:15369671; FT date=20041105" FT /GO="aspect=P; term=histone deacetylation; FT GOid=GO:0016575; evidence=IMP; db_xref=PMID:15369671; FT date=20041105" FT /GO="aspect=P; term=kinetochore assembly; GOid=GO:0051382; FT evidence=TAS; db_xref=PMID:15897182; date=20050614" FT /GO="aspect=P; term=protein complex localization; FT GOid=GO:0031503; evidence=TAS; db_xref=PMID:15897182; FT date=20050614" FT /GO="aspect=P; term=protein localization; FT qualifier=localization_dependency; GOid=GO:0008104; FT evidence=IGI; db_xref=PMID:15369671; FT with=GeneDB_Spombe:SPBC1105.17; date=20041210" FT /GO="aspect=P; term=regulation of histone deacetylation at FT centromere; GOid=GO:0031066; evidence=IMP; FT db_xref=PMID:15369671; date=20041105" FT /GO="aspect=P; term=DNA replication-independent nucleosome FT assembly at centromere; GOid=GO:0034080; evidence=TAS; FT db_xref=PMID:18158900; date=20080104" FT /colour=2 FT /fasta_file="fasta/c970.tab.seq.00003.out" FT /primary_name="mis18" FT /product="kinetochore protein Mis18" FT /systematic_id="SPCC970.12" FT /gene="mis18" FT /gene="SPCC970.12" FT /controlled_curation="term=essential; FT db_xref=PMID:15369671; date=19700101" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=19700101" FT /controlled_curation="term=similar to human hMis18alpha; FT date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(514252..514266) FT /colour=6 FT /note="ctaaccccagtgaag, splice branch and acceptor" FT misc_feature complement(514287..514292) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature complement(514329..514345) FT /colour=6 FT /note="ttaacaaaatcatgtag, splice branch and acceptor" FT misc_feature complement(514371..514376) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature complement(514464..514481) FT /colour=6 FT /note="ctaatacaaaaattatag, splice branch and acceptor" FT misc_feature complement(514505..514510) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature complement(514572..514588) FT /colour=6 FT /note="ttaattatttcatttag, splice branch and acceptor" FT misc_feature complement(514611..514616) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT CDS complement(join(514906..515322,515363..515794,515837..516164,516204..516552,516602..516885,516936..517412,517459..517581,517635..517903)) FT /EC_number="3.1.-.-" FT /GO="aspect=C; term=nucleotide-excision repair complex; FT GOid=GO:0000109; evidence=ISS; db_xref=PMID:17072883; FT with=UNIPROT:P06777; date=20050117" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; evidence=IC; FT db_xref=PMID:17072883; from=GO:0000014; date=20041102" FT /GO="aspect=F; term=DNA binding; GOid=GO:0003677; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005943; FT date=20070105" FT /GO="aspect=F; term=protein heterodimerization activity; FT qualifier=C_term; GOid=GO:0046982; evidence=IPI; FT db_xref=PMID:8114734; with=GeneDB_Spombe:SPBC4F6.15c; FT date=20041102" FT /GO="aspect=F; term=single-stranded DNA specific FT endodeoxyribonuclease activity; qualifier=contributes_to; FT GOid=GO:0000014; evidence=ISS; db_xref=PMID:17072883; FT with=Uniprot:P06777; date=20041102" FT /GO="aspect=P; term=gene conversion at mating-type locus; FT GOid=GO:0007534; evidence=IMP; db_xref=PMID:12628934; FT date=20041101" FT /GO="aspect=P; term=meiotic gene conversion; FT qualifier=required; GOid=GO:0006311; evidence=IMP; FT db_xref=PMID:12628934; date=20041101" FT /GO="aspect=P; term=nucleotide-excision repair, DNA FT incision, 5'-to lesion; GOid=GO:0006296; evidence=TAS; FT db_xref=PMID:10080187; date=20061012" FT /GO="aspect=P; term=nucleotide-excision repair; FT qualifier=same_pathway; GOid=GO:0006289; evidence=IGI; FT db_xref=PMID:8709952; with=GeneDB_Spombe:SPBC3E7.08c; FT date=20061012" FT /colour=2 FT /fasta_file="fasta/c970.tab.seq.00040.out" FT /primary_name="rad16" FT /product="DNA repair endonuclease XPF" FT /synonym="rad10" FT /synonym="rad20" FT /synonym="swi9" FT /systematic_id="SPCC970.01" FT /gene="rad16" FT /gene="rad10" FT /gene="rad20" FT /gene="swi9" FT /gene="SPCC970.01" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070428" FT /controlled_curation="term=ERCC4 family; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YPL022W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(515323..515336) FT /colour=6 FT /note="ctgacagcttttag, splice branch and acceptor" FT misc_feature complement(515357..515362) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature complement(515795..515807) FT /colour=6 FT /note="ctaatctaaaaag, splice branch and acceptor" FT misc_feature complement(515831..515836) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature complement(516165..516177) FT /colour=6 FT /note="ctaataagtctag, splice branch and acceptor" FT misc_feature complement(516198..516203) FT /colour=6 FT /note="gtacgc, splice donor sequence" FT misc_feature complement(516553..516568) FT /colour=6 FT /note="ttaacaaatctttcag, splice branch and acceptor" FT misc_feature complement(516596..516601) FT /colour=6 FT /note="gtataa, splice donor sequence" FT misc_feature complement(516886..516898) FT /colour=6 FT /note="ctaactaaacaag, splice branch and acceptor" FT misc_feature complement(516930..516935) FT /colour=6 FT /note="gttcgt, splice donor sequence" FT misc_feature complement(517413..517432) FT /colour=6 FT /note="cttacatatggttcttacag, splice branch and acceptor" FT misc_feature complement(517453..517458) FT /colour=6 FT /note="gtaagc, splice donor sequence" FT misc_feature complement(517581..517602) FT /colour=6 FT /note="ctgatttattaataattttag, splice branch and acceptor" FT misc_feature complement(517629..517634) FT /colour=6 FT /note="gtaagc, splice donor sequence" FT misc_feature 518001..518095 FT /note="nominal overlap with cosmid SPCC970 and SPCC10H11" FT misc_feature 518393..518441 FT /note="short region of similar to a gene free region of FT SPCC1840 S. pombe chromosome 3" FT CDS 519540..522584 FT /GO="aspect=F; term=ATP-dependent RNA helicase activity; FT GOid=GO:0004004; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000000441; date=20060523" FT /GO="aspect=C; term=spliceosome complex; GOid=GO:0005681; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000000441; FT date=20060523" FT /GO="aspect=P; term=nuclear mRNA splicing, via FT spliceosome; GOid=GO:0000398; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000000441; date=20060523" FT /colour=2 FT /fasta_file="fasta/c10H11.tab.seq.00005.out" FT /primary_name="prp11" FT /product="ATP-dependent RNA helicase Prp11" FT /systematic_id="SPCC10H11.01" FT /gene="prp11" FT /gene="SPCC10H11.01" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070522" FT /controlled_curation="term=DEAD/DEAH box helicase; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YBR237W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT rRNA 523289..523475 FT /product="5S rRNA" FT /systematic_id="SPRRNA.24" FT /GO="aspect=F; term=structural constituent of ribosome ; FT GOid=GO:0003735; evidence=RCA; db_xref=PMID:17072883; FT date=20070705" FT /GO="aspect=C; term=cytosolic ribosome (sensu Eukaryota); FT GOid=GO:0022626; evidence=RCA; db_xref=PMID:17072883; FT date=20070705" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=RCA; db_xref=PMID:17072883; date=20070705" FT CDS 524132..525001 FT /GO="aspect=C; term=spliceosome complex; GOid=GO:0005681; FT evidence=IDA; db_xref=PMID:11884590; date=20050524" FT /GO="aspect=F; term=Hsp70 protein binding; FT GOid=GO:0030544; evidence=ISS; db_xref=PMID:17072883; FT with=Pfam:PF00226; date=20040413" FT /GO="aspect=P; term=nuclear mRNA splicing, via FT spliceosome; GOid=GO:0000398; evidence=IPI; FT db_xref=GOC:unpublished; with=GO:0005681; date=20080905" FT /colour=2 FT /fasta_file="fasta/c10H11.tab.seq.00004.out" FT /fasta_file="fasta/p31B10.tab.seq.00011.out" FT /primary_name="cwf23" FT /product="DNAJ domain protein Cwf23" FT /synonym="SPCP31B10.01" FT /systematic_id="SPCC10H11.02" FT /gene="cwf23" FT /gene="SPCC10H11.02" FT /gene="SPCP31B10.01" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070522" FT /controlled_curation="term=DNAJ domain protein; FT date=19700101" FT /controlled_curation="term=complexed with Cdc5p; FT db_xref=PMID:11884590; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YGL128C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 524660..524758 FT /note="nominal overlap with cosmid SPCC10H11 and cosmid FT SPCP31B10" FT CDS 525361..525792 FT /GO="aspect=C; term=mitochondrion; GOid=GO:0005739; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:Q02873; FT date=20040831" FT /colour=10 FT /fasta_file="fasta/p31B10.tab.seq.00012.out" FT /note="conserved VP.KP.EP.NCC.SGC..CVW.Y..DL" FT /product="conserved eukaryotic protein" FT /systematic_id="SPCP31B10.02" FT /gene="SPCP31B10.02" FT /controlled_curation="term=conserved eukaryotic protein; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YPL107W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(526271..526690) FT /GO="aspect=C; term=Srb-mediator complex; GOid=GO:0016592; FT evidence=NAS; db_xref=GOC:unpublished; date=20080729" FT /GO="aspect=C; term=mediator complex; GOid=GO:0000119; FT evidence=IDA; db_xref=PMID:15356001; date=20070706" FT /GO="aspect=C; term=mediator complex; GOid=GO:0000119; FT evidence=IGI; db_xref=PMID:12471453; FT with=GeneDB_Spombe:SPAC5D6.05; date=20040915" FT /GO="aspect=F; term=RNA polymerase II transcription FT mediator activity; GOid=GO:0016455; evidence=TAS; FT db_xref=PMID:12471453; date=20050420" FT /GO="aspect=P; term=specific transcription from RNA FT polymerase II promoter; GOid=GO:0032569; evidence=IC; FT db_xref=PMID:17072883; from=GO:0000119; date=20050112" FT /GO="aspect=P; term=transcription from RNA polymerase II FT promoter; GOid=GO:0006366; evidence=IPI; FT db_xref=PMID:15356001; with=GO:0000119; date=20050420" FT /colour=2 FT /fasta_file="fasta/p31B10.tab.seq.00013.out" FT /primary_name="med31" FT /product="mediator complex subunit Med31" FT /synonym="soh1" FT /synonym="sep10" FT /systematic_id="SPCP31B10.03c" FT /gene="med31" FT /gene="soh1" FT /gene="sep10" FT /gene="SPCP31B10.03c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070522" FT /controlled_curation="term=pleiotropic effects; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YGL127C; date=19700101" FT /controlled_curation="term=deletion results in sterility; FT db_xref=PMID:15356001; date=20070706" FT /controlled_curation="term=deletion results in hypal FT growth; db_xref=PMID:15356001; date=20070706" FT /controlled_curation="term=mutant displays flocculation; FT db_xref=PMID:183101023; date=20080729" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 5'UTR 527392..527601 FT /note="mRNA from AU006488" FT /gene="SPCP31B10.04" FT CDS join(527602..527665,527751..528092,528190..528647) FT /colour=10 FT /fasta_file="fasta/p31B10.tab.seq.00001.out" FT /note="homology to YKL077W is low but has conserved FT residues by multiple alignment, conserved N-terminal FT signal peptide and C-terminal transmenbrane helix" FT /note="confirmed intron" FT /product="conserved fungal protein" FT /systematic_id="SPCP31B10.04" FT /gene="SPCP31B10.04" FT /controlled_curation="term=conserved fungal protein; FT date=19700101" FT /controlled_curation="term=similar to S. pombe FT SPBC21C3.17C; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YKL077W; date=19700101" FT /controlled_curation="term=predicted N-terminal signal FT sequence; date=19700101" FT /controlled_curation="term=1 predicted transmembrane FT helix; date=19700101" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT /controlled_curation="term=conserved in Fungi only; FT date=20081110" FT misc_feature 527666..527671 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT intron 527666..527750 FT /note="confirmed intron" FT /gene="SPCP31B10.04" FT misc_feature 527740..527750 FT /colour=6 FT /note="ctaacctatag, splice branch and acceptor" FT misc_feature 528093..528098 FT /colour=6 FT /note="gttcgt, splice donor sequence" FT misc_feature 528175..528189 FT /colour=6 FT /note="ctaactatttttcag, splice branch and acceptor" FT CDS 529173..530783 FT /GO="aspect=F; term=tyrosyl-DNA phosphodiesterase FT activity; GOid=GO:0017005; evidence=ISS; FT db_xref=PMID:17072883; with=UNIPROT:P38319; date=20041218" FT /GO="aspect=P; term=DNA repair; GOid=GO:0006281; FT evidence=ISS; db_xref=PMID:17072883; with=UNIPROT:P38319; FT date=20041218" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=ISS; db_xref=PMID:17072883; with=UNIPROT:P38319; FT date=20041218" FT /colour=7 FT /fasta_file="fasta/p31B10.tab.seq.00015.out" FT /product="tyrosyl-DNA phosphodiesterase (predicted)" FT /systematic_id="SPCP31B10.05" FT /gene="SPCP31B10.05" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070522" FT /controlled_curation="term=similar to S. cerevisiae FT YBR223C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_RNA complement(529215..531143) FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=antisense; date=20071312" FT /synonym="SPNG2AF57" FT /product="non-coding RNA (predicted)" FT /systematic_id="SPNCRNA.580" FT CDS 533322..536888 FT /GO="aspect=C; term=membrane; GOid=GO:0016020; FT evidence=NAS; db_xref=PMID:17072883; date=20050603" FT /GO="aspect=F; term=lipid binding; GOid=GO:0008289; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000004537; FT date=20050603" FT /colour=10 FT /fasta_file="fasta/p31B10.tab.seq.00016.out" FT /product="C2 domain protein" FT /systematic_id="SPCP31B10.06" FT /primary_name="mug190" FT /gene="SPCP31B10.06" FT /gene="mug190" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070522" FT /controlled_curation="term=C2 domain; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YML072C and YNL087W and YOR086C; date=19700101" FT /controlled_curation="term=meiotic expression upregulated; FT db_xref=PMID:16303567; date=20080908" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT CDS 537326..539854 FT /GO="aspect=F; term=translation elongation factor FT activity; GOid=GO:0003746; evidence=TAS; FT db_xref=PMID:9099890; date=20050603" FT /GO="aspect=F; term=GTP binding; GOid=GO:0005525; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00009; FT date=20050603" FT /GO="aspect=P; term=translational elongation; FT GOid=GO:0006414; evidence=TAS; db_xref=PMID:9099890; FT date=20050603" FT /GO="aspect=C; term=ribosome; qualifier=associated_with; FT GOid=GO:0005840; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000005659; date=20050603" FT /colour=2 FT /fasta_file="fasta/p31B10.tab.seq.00017.out" FT /primary_name="eft202" FT /product="translation elongation factor 2" FT /systematic_id="SPCP31B10.07" FT /gene="eft202" FT /gene="SPCP31B10.07" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070522" FT /controlled_curation="term=EF-2; date=19700101" FT /controlled_curation="term=identical to S. pombe eft201; FT date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YOR133W and YDR385W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(join(540259..540376,540567..540775)) FT /GO="aspect=C; term=cytosolic large ribosomal subunit FT (sensu Eukaryota); GOid=GO:0022625; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000006064; date=20061026" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000006064; FT date=20061026" FT /GO="aspect=F; term=structural constituent of ribosome; FT GOid=GO:0003735; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000006064; date=20061026" FT /colour=2 FT /fasta_file="fasta/p31B10.tab.seq.00018.out" FT /primary_name="rpl35a" FT /product="60S ribosomal protein L35a" FT /synonym="rpl33" FT /systematic_id="SPCP31B10.08c" FT /gene="rpl35a" FT /gene="rpl33" FT /gene="SPCP31B10.08c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070522" FT /controlled_curation="term=similar to S. cerevisiae FT YOR234C and YPL143W; date=19700101" FT /controlled_curation="term=conserved in archaea; FT date=20081106" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(540377..540393) FT /colour=6 FT /note="ctaacttatcgttttag, splice branch and acceptor" FT misc_feature complement(540561..540566) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT CDS join(541275..541388,541569..545744) FT /GO="aspect=C; term=membrane; GOid=GO:0016020; FT evidence=NAS; db_xref=PMID:17072883; date=20050603" FT /GO="aspect=F; term=lipid binding; GOid=GO:0008289; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000004537; FT date=20050603" FT /colour=10 FT /fasta_file="fasta/p31B10.tab.seq.00019.out" FT /fasta_file="fasta/c962.tab.seq.04519.out" FT /product="C2 domain protein" FT /synonym="SPCP31B10.09" FT /systematic_id="SPCC962.01" FT /gene="SPCP31B10.09" FT /gene="SPCC962.01" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070522" FT /controlled_curation="term=C2 domain; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YML072C and YNL087W and YOR086C; date=19700101" FT /controlled_curation="term=similar to S. pombe FT SPCP31B10.06; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature 541389..541394 FT /colour=6 FT /note="gtaagc, splice donor sequence" FT misc_feature 541553..541568 FT /colour=6 FT /note="ttaacgctagaaatag, splice branch and acceptor" FT misc_feature 544200..546308 FT /note="nominal overlap with cosmid SPCC962 and plasmid FT SPAP31B10" FT CDS complement(join(546108..548972,549020..549148)) FT /GO="aspect=P; term=protein localization to kinetochore; FT qulaifier=localization_dependency; GOid=GO:0034501; FT evidence=IGI; db_xref=PMID:18362178; FT with=GeneDB_Spombe:SPBP4H10.06c; date=20080602" FT /GO="aspect=P; term=protein localization to nucleolar rDNA FT repeats; qulaifier=localization_dependency; FT GOid=GO:0034503; evidence=IGI; db_xref=PMID:18362178; FT with=GeneDB_Spombe:SPBP4H10.06c; date=20080602" FT /GO="aspect=C; term=condensed chromosome kinetochore; FT qualifier=during_metaphase|during_early_anaphase; FT GOid=GO:0000777; evidence=IDA; db_xref=PMID:11861551; FT date=20041203" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=IDA; db_xref=PMID:11861551; date=20041203" FT /GO="aspect=C; term=spindle midzone; FT qualifier=during_late_anaphase; GOid=GO:0051233; FT evidence=IDA; db_xref=PMID:11861551; date=20041203" FT /GO="aspect=C; term=spindle; qualifier=during_anaphase; FT GOid=GO:0005819; evidence=IDA; db_xref=PMID:11861551; FT date=20041203" FT /GO="aspect=P; term=chromosome condensation; FT qualifier=required; GOid=GO:0030261; evidence=IMP; FT db_xref=PMID:11554922; date=20041203" FT /GO="aspect=P; term=chromosome condensation; FT qualifier=required; GOid=GO:0030261; evidence=IMP; FT db_xref=PMID:11861551; date=20041203" FT /GO="aspect=P; term=chromosome segregation; FT qualifier=required; GOid=GO:0007059; evidence=IMP; FT db_xref=PMID:10571085; date=20041203" FT /GO="aspect=P; term=mitotic spindle checkpoint; FT GOid=GO:0007094; evidence=IGI; db_xref=PMID:17072883; FT with=GeneDB_Spombe:SPBC20F10.06; date=20041203" FT /GO="aspect=P; term=mitotic spindle elongation; FT qualifier=required; GOid=GO:0000022; evidence=IMP; FT db_xref=PMID:11554922; date=20041203" FT /GO="aspect=P; term=protein localization; FT qualifier=localization_dependency; GOid=GO:0008104; FT evidence=IGI; db_xref=PMID:11554922; FT with=GeneDB_Spombe:SPCC320.13c; date=20041203" FT /GO="aspect=P; term=protein localization; FT qualifier=localization_dependency; GOid=GO:0008104; FT evidence=IGI; db_xref=PMID:11861551; FT with=GeneDB_Spombe:SPCC320.13c; date=20041203" FT /GO="aspect=P; term=mitotic sister chromatid segregation; FT GOid=GO:0000070; evidence=IMP; db_xref=PMID:16199877; FT date=20060123" FT /GO="aspect=C; term=chromosome passenger complex; FT GOid=GO:0032133; evidence=TAS; db_xref=PMID:16824200; FT date=20060814" FT /colour=2 FT /fasta_file="fasta/c962.tab.seq.00007.out" FT /primary_name="bir1" FT /product="survivin homolog" FT /synonym="cut17" FT /synonym="pbh1" FT /synonym="SPCP31B10.10c" FT /systematic_id="SPCC962.02c" FT /gene="bir1" FT /gene="cut17" FT /gene="pbh1" FT /gene="SPCC962.02c" FT /gene="SPCP31B10.10c" FT /controlled_curation="term=kinetochore to spindle FT relocalization or Bir1 is dependent on Cdk inactivation FT and an intact microtubular network; db_xref=PMID:16824200; FT date=20060814" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070522" FT /controlled_curation="term=similar to S. cerevisiae FT YJR089W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature complement(546108..546308) FT /note="see cut17 SPCC962.02c for complete CDS" FT misc_feature complement(548973..548987) FT /colour=6 FT /note="ctaacaagaaaatag, splice branch and acceptor" FT misc_feature complement(549014..549019) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT CDS complement(550473..552101) FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005133; FT date=20050603" FT /GO="aspect=C; term=nucleus; GOid=GO:0005634; FT evidence=IDA; db_xref=PMID:9740803; date=20050603" FT /GO="aspect=F; term=GTP binding; GOid=GO:0005525; FT evidence=NAS; db_xref=PMID:17072883; date=20060320" FT /GO="aspect=F; term=protein binding, bridging; FT GOid=GO:0030674; evidence=IPI; db_xref=PMID:15937127; FT with=GeneDB_Spombe:SPAC1783.07c; date=20050610" FT /GO="aspect=F; term=protein transporter activity; FT GOid=GO:0008565; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000005133; date=20050603" FT /GO="aspect=P; term=M phase of mitotic cell cycle; FT GOid=GO:0000087; evidence=IMP; db_xref=PMID:9740803; FT date=20050610" FT /GO="aspect=P; term=NLS-bearing substrate import into FT nucleus; GOid=GO:0006607; evidence=TAS; FT db_xref=PMID:15937127; date=20050610" FT /GO="aspect=P; term=chromosome condensation; FT qualifier=required; GOid=GO:0030261; evidence=IMP; FT db_xref=PMID:9740803; date=20050603" FT /GO="aspect=P; term=protein import into nucleus; FT GOid=GO:0006606; evidence=IDA; db_xref=PMID:9740803; FT date=20050603" FT /GO="aspect=P; term=protein import into nucleus; FT qualfier=localization_dependency; GOid=GO:0006606; FT evidence=IGI; db_xref=PMID:18362178; FT with=GeneDB_Spombe:SPBP4H10.06c; date=20050603" FT /GO="aspect=P; term=protein import into nucleus; FT qualfier=localization_dependency; GOid=GO:0006606; FT evidence=IGI; db_xref=PMID:18362178; FT with=GeneDB_Spombe:SPBC776.13; date=20050603" FT /GO="aspect=P; term=regulation of progression through FT mitotic cell cycle; GOid=GO:0007346; evidence=IMP; FT db_xref=PMID:8395535; date=20050603" FT /GO="aspect=P; term=response to stress; GOid=GO:0006950; FT evidence=IGI; db_xref=PMID:15937127; FT with=GeneDB_Spombe:SPAC1783.07c; date=20050610" FT /colour=2 FT /fasta_file="fasta/c962.tab.seq.00002.out" FT /primary_name="cut15" FT /product="karyopherin Cut15" FT /systematic_id="SPCC962.03c" FT /gene="cut15" FT /gene="SPCC962.03c" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070522" FT /controlled_curation="term=importin family; date=19700101" FT /controlled_curation="term=armadillo repeat protein; FT date=19700101" FT /controlled_curation="term=essential; FT db_xref=PMID:9740803; date=19700101" FT /controlled_curation="term=function partially overlapping FT with Imp1; db_xref=PMID:15116432; date=19700101" FT /controlled_curation="term=similar to S. pombe FT SPBC1604.08C; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YNL189W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT LTR complement(552825..552963) FT /note="LTR fragment" FT CDS join(553185..553565,553648..553704) FT /GO="aspect=C; term=cytosolic small ribosomal subunit FT (sensu Eukaryota); GOid=GO:0022627; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000005896; date=20060726" FT /GO="aspect=P; term=translation; GOid=GO:0006412; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000005896; FT date=20060726" FT /GO="aspect=F; term=structural constituent of ribosome; FT GOid=GO:0003735; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000005896; date=20060726" FT /colour=7 FT /fasta_file="fasta/c962.tab.seq.04522.out" FT /primary_name="rps1201" FT /product="40S ribosomal protein S12" FT /synonym="rps12-1" FT /synonym="rps12" FT /systematic_id="SPCC962.04" FT /gene="rps1201" FT /gene="rps12-1" FT /gene="SPCC962.04" FT /gene="rps12" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070522" FT /controlled_curation="term=similar to S. cerevisiae FT YOR369C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature 553278..553322 FT /colour=8 FT /note="PS01189 Ribosomal protein S12e signature" FT misc_feature 553566..553571 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT intron 553566..553647 FT /note="confirmed intron" FT /gene="rps1201" FT /gene="rps12-1" FT /gene="SPCC962.04" FT /gene="rps12" FT misc_feature 553632..553647 FT /colour=6 FT /note="ctaacatgtaatttag, splice branch and acceptor" FT CDS join(554521..554744,554865..556200) FT /colour=7 FT /product="asteroid homolog, XP-G family protein" FT /systematic_id="SPCC962.05" FT /GO="aspect=F; term=nuclease activity; GOid=GO:0004518; FT evidence=ISS; db_xref=GOC:unpublished; FT with=UniProtKB:Q2TB18; date=20080519" FT /reserved_name="ast1" FT /primary_name="ast1" FT /gene="SPCC962.05" FT /gene="ast1" FT /fasta_file="%uniprot:fasta/chromosome3.contig.seq.04494.out" FT /controlled_curation="term=conserved eukaryotic family; FT date=20080519" FT /controlled_curation="term=no apparent S. cerevisiae FT ortholog; date=20080519" FT /controlled_curation="term=XP-G family; date=20080519" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT misc_feature 554723..554728 FT /colour=6 FT /note="gtaggt, splice donor sequence" FT misc_feature 554852..554864 FT /colour=6 FT /note="ctaacgcatacag, splice branch and acceptor" FT CDS complement(join(556396..558128,558175..558205)) FT /GO="aspect=C; term=commitment complex; GOid=GO:0000243; FT evidence=IDA; db_xref=PMID:12374752; date=20040505" FT /GO="aspect=P; term=generation of catalytic spliceosome FT for first transesterification step; GOid=GO:0000349; FT evidence=IDA; db_xref=PMID:12374752; date=20040505" FT /GO="aspect=F; term=RNA binding; GOid=GO:0003723; FT evidence=ISS; db_xref=PMID:17072883; with=Pfam:PF00013; FT date=20040506" FT /colour=2 FT /fasta_file="fasta/c962.tab.seq.00008.out" FT /primary_name="bpb1" FT /product="zinc finger protein Bpb1" FT /synonym="sf1" FT /systematic_id="SPCC962.06c" FT /gene="bpb1" FT /gene="sf1" FT /gene="SPCC962.06c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070522" FT /controlled_curation="term=zinc finger protein; FT date=19700101" FT /controlled_curation="term=zf-CCHC type (zinc knuckle); FT date=19700101" FT /controlled_curation="term=KH domain; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YLR116W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(558129..558141) FT /colour=6 FT /note="ttaatatttttag, splice branch and acceptor" FT intron complement(558129..558174) FT /note="confirmed intron" FT /gene="bpb1" FT /gene="sf1" FT /gene="SPCC962.06c" FT misc_feature complement(558169..558174) FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature complement(558430..558439) FT /colour=4 FT /note="discrepancy: in cosmid c2C2 this has only 9 A's" FT misc_feature 558489..560336 FT /note="nominal overlap with cosmid SPCC1672, EM:AL031324 FT S. pombe chromosome 3" FT misc_feature complement(558489..560336) FT /note="nominal overlap with cosmid SPCC962, EM:AL031323 S. FT pombe chromosome 3" FT CDS join(560067..560098,560215..560341,560516..561277) FT /EC_number="3.1.3.15" FT /GO="aspect=F; term=histidinol-phosphatase activity; FT GOid=GO:0004401; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001921; date=20050416" FT /GO="aspect=P; term=histidine biosynthesis; FT GOid=GO:0000105; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000001921; date=20050416" FT /colour=7 FT /controlled_curation="term=similar to S. cerevisiae FT YFR025C; date=19700101" FT /controlled_curation="term=conserved protein; FT date=20070723" FT /fasta_file="c962.seq.0008.out" FT /fasta_file="fasta/c1672.tab.seq.00039.out" FT /product="histidinol-phosphatase (predicted)" FT /systematic_id="SPCC1672.01" FT /gene="SPCC1672.01" FT misc_feature 560099..560104 FT /colour=6 FT /note="gtatgt, splice donor sequence" FT misc_feature 560199..560214 FT /colour=6 FT /note="ctaacttttattgaag, splice branch and acceptor" FT misc_feature 560342..560347 FT /colour=6 FT /note="gtaagt, splice donor sequence" FT misc_feature 560497..560515 FT /colour=6 FT /note="ctaactatgattcatttag, splice branch and acceptor" FT CDS complement(562353..563117) FT /GO="aspect=C; term=nuclear chromatin; FT qualifier=associated_with; GOid=GO:0000790; evidence=TAS; FT db_xref=PMID:14555473; date=20041103" FT /GO="aspect=F; term=DNA bending activity; GOid=GO:0008301; FT evidence=IDA; db_xref=PMID:16195226; date=20050919" FT /GO="aspect=F; term=DNA binding; GOid=GO:0003677; FT evidence=IDA; db_xref=PMID:16166653; date=20050930" FT /GO="aspect=F; term=DNA binding; GOid=GO:0003677; FT qualifier=N_term; evidence=IDA; db_xref=PMID:8065904; FT date=20041103" FT /GO="aspect=F; term=protein homodimerization activity; FT qualifer=C_term; GOid=GO:0042803; evidence=TAS; FT db_xref=PMID:16166653; date=20050919" FT /GO="aspect=F; term=rDNA spacer replication fork barrier FT binding; GOid=GO:0043110; evidence=IDA; FT db_xref=PMID:16166653; date=20050919" FT /GO="aspect=F; term=rDNA spacer replication fork barrier FT binding; GOid=GO:0043110; evidence=IDA; FT db_xref=PMID:16195226; date=20050919" FT /GO="aspect=P; term=chromosome organization and biogenesis FT (sensu Eukaryota); GOid=GO:0051276; evidence=IMP; FT db_xref=PMID:14555473; date=20041103" FT /GO="aspect=P; term=chromosome segregation; FT GOid=GO:0007059; evidence=IMP; db_xref=PMID:8114737; FT date=20051004" FT /GO="aspect=P; term=gene conversion at mating-type locus, FT DNA double-strand break formation; qualifier=regulates; FT GOid=GO:0000728; evidence=IMP; db_xref=PMID:1915277; FT date=20041103" FT /GO="aspect=P; term=replication fork blocking at rDNA FT repeats; GOid=GO:0031582; evidence=IDA; FT db_xref=PMID:16166653; date=20050919" FT /GO="aspect=P; term=replication fork blocking at rDNA FT repeats; GOid=GO:0031582; evidence=IMP; FT db_xref=PMID:16195226; date=20050919" FT /colour=2 FT /controlled_curation="term=essential; FT db_xref=PMID:8114737; date=19700101" FT /controlled_curation="term=no apparent orthologs; FT date=19700101" FT /fasta_file="fasta/c1672.tab.seq.00001.out" FT /primary_name="sap1" FT /product="switch-activating protein Sap1" FT /systematic_id="SPCC1672.02c" FT /gene="sap1" FT /gene="SPCC1672.02c" FT misc_RNA 564187..565519 FT /db_xref="PMID:18488015" FT /controlled_curation="term=non-coding RNA; FT db_xref=PMID:18488015; date=20080430" FT /controlled_curation="term=longest ORF with methionine is FT 66 amino acids; date=20071008" FT /controlled_curation="term=no detectable long open reading FT frame; date=20071008" FT /note="WARNING:this transcript could be on either strand" FT /systematic_id="SPNCRNA.466" FT /synonym="SPNG2151" FT /product="non-coding RNA (predicted)" FT CDS complement(565891..567474) FT /EC_number="3.5.4.3" FT /GO="aspect=P; term=guanine metabolism; GOid=GO:0046098; FT evidence=ISS; db_xref=PMID:17072883; with=UNIPROT:Q07729; FT date=20041129" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=UNIPROT:Q07729; FT date=20041129" FT /GO="aspect=F; term=guanine deaminase activity; FT GOid=GO:0008892; evidence=ISS; db_xref=PMID:17072883; FT with=UNIPROT:Q07729; date=20041129" FT /colour=7 FT /fasta_file="fasta/c1672.tab.seq.00041.out" FT /product="guanine deaminase (predicted)" FT /systematic_id="SPCC1672.03c" FT /gene="SPCC1672.03c" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070522" FT /controlled_curation="term=similar to S. cerevisiae FT YDL238C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT CDS complement(join(568700..568953,569021..569072)) FT /GO="aspect=P; term=mitochondrial respiratory chain FT complex IV assembly; GOid=GO:0033617; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000007245; date=20040823" FT /GO="aspect=C; term=mitochondrial intermembrane space; FT GOid=GO:0005758; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000007245; date=20040823" FT /GO="aspect=F; term=copper chaperone activity; FT GOid=GO:0016531; evidence=ISS; db_xref=GOC:unpublished; FT with=SGD:S000007245; date=20071118" FT /GO="aspect=F; term=copper ion binding; GOid=GO:0005507; FT evidence=ISS; db_xref=GOC:unpublished; FT with=SGD:S000007245; date=20071118" FT /colour=7 FT /fasta_file="fasta/c1672.tab.seq.00042.out" FT /product="mitochondrial copper chaperone (predicted)" FT /systematic_id="SPCC1672.04c" FT /gene="SPCC1672.04c" FT /controlled_curation="term=conserved eukaryotic protein; FT date=20070522" FT /controlled_curation="term=CHCH domain; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YLL018C-A; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT misc_feature complement(568954..568971) FT /colour=6 FT /note="ctaatacttgtcgtgcag, splice branch and acceptor" FT misc_feature complement(569015..569020) FT /colour=6 FT /note="gtatgt, splice donor sequence" FT CDS complement(570243..571448) FT /EC_number="6.1.1.1" FT /GO="aspect=P; term=tyrosyl-tRNA aminoacylation; FT GOid=GO:0006437; evidence=IC; db_xref=PMID:17072883; FT from=GO:0004831; date=20030627" FT /GO="aspect=F; term=tyrosine-tRNA ligase activity; FT GOid=GO:0004831; evidence=ISS; db_xref=PMID:17072883; FT with=SPTR:P36421; date=20030627" FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SPTR:P36421; FT date=20030627" FT /colour=7 FT /fasta_file="fasta/c1672.tab.seq.00043.out" FT /product="cytoplasmic tyrosine-tRNA ligase Yrs1 FT (predicted)" FT /db_xref="PATH: MAP00400;" FT /db_xref="PATH: MAP00970;" FT /systematic_id="SPCC1672.05c" FT /primary_name="yrs1" FT /gene="SPCC1672.05c" FT /gene="yrs1" FT /controlled_curation="term=conserved protein, broad FT species distribution; date=20070522" FT /controlled_curation="term=similar to S. cerevisiae FT YGR185C; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Prokaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=predominantly uniformly single FT copy (one to one); date=20081110" FT 5'UTR complement(571449..571477) FT /note="mRNA from AU010928" FT /gene="SPCC1672.05c" FT /gene="yrs1" FT CDS complement(571710..574472) FT /GO="aspect=C; term=cytoplasm; GOid=GO:0005737; FT evidence=ISS; db_xref=PMID:17072883; with=SGD:S000004402; FT date=20050222" FT /GO="aspect=F; term=inositol heptakisphosphate kinase FT activity; GOid=GO:0000828; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000004402; date=20070421" FT /GO="aspect=F; term=inositol hexakisphosphate 4-kinase or FT 6-kinase activity; GOid=GO:0033187; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000004402; date=20070723" FT /GO="aspect=P; term=cortical actin cytoskeleton FT organization and biogenesis; GOid=GO:0030866; FT evidence=IMP; db_xref=PMID:10388810; date=20050222" FT /GO="aspect=P; term=establishment and/or maintenance of FT actin cytoskeleton polarity; GOid=GO:0030950; FT evidence=IMP; db_xref=PMID:10388810; date=20050222" FT /GO="aspect=P; term=inositol phosphate biosynthetic FT process; GOid=GO:0032958; evidence=ISS; FT db_xref=GOC:unpublished; with=SGD:S000004402; FT date=20080123" FT /colour=2 FT /fasta_file="fasta/c1672.tab.seq.00003.out" FT /primary_name="asp1" FT /product="inositol hexakisphosphate kinase/inositol FT pyrophosphate synthase (predicted)" FT /systematic_id="SPCC1672.06c" FT /synonym="vip1" FT /gene="asp1" FT /gene="SPCC1672.06c" FT /gene="vip1" FT /controlled_curation="term=deletion mutant results in FT altered morphology and growth properties at elevated FT temperatures; db_xref=PMID:10388810; date=20060601" FT /controlled_curation="term=deletion mutant results in FT polarized growth defects; db_xref=PMID:10388810; FT date=20060601" FT /controlled_curation="term=synthetically lethal with FT mutations in Arp2/3 complex components; FT db_xref=PMID:10388810; date=20060601" FT /controlled_curation="term=conserved eukaryotic family; FT date=20070522" FT /controlled_curation="term=non-essential; FT db_xref=PMID:10388810; date=19700101" FT /controlled_curation="term=similar to S. cerevisiae FT YLR410W; date=19700101" FT /controlled_curation="term=conserved in Eukaryotes; FT date=20081110" FT /controlled_curation="term=conserved in Metazoa; FT date=20081110" FT /controlled_curation="term=conserved in Vertebrates; FT date=20081110" FT /controlled_curation="term=conserved in Fungi; FT date=20081110" FT /controlled_curation="term=conserved in Eukaryotes only; FT date=20081110" FT CDS join(575537..575612,575672..578304) FT /GO="aspect=C; term=small nucleolar ribonucleoprotein FT complex; GOid=GO:0005732; evidence=ISS; FT db_xref=PMID:17072883; with=SGD:S000004401; date=20060925" FT /GO="aspect=P; term=35S primary transcript processing; FT GOid=GO:0006364; evidence=ISS; db_xref=PMID:17072883; FT with=SGD:S000004401; date=20060925" FT /colour=7 FT /fasta_file="fasta/c1672.tab.seq.00045.out" FT /product="U3 snoRNP-associated protein Utp21 (predicted)" FT