Only chordata within top2:


SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
pfam059020000000000000000004102207104_1_CTD
pfam0000100000000000000000017713121010313314293416847tm_1
pfam0166130020223034200210011231251512A1pp
smart0050630020322134200312211256311514A1pp
smart006080000000000000000002256533648ACR
smart005522000011210120111115143441311ADEAMc
pfam051100000000000000000000052222332AF-4
smart0024879008121523442044757619762271412690295151190146637521ANK
smart00335500000000027160085001810183622159284ANX
smart001779111171022494829268754121821202620675565617674156156ARF
pfam013882000110002630323214486862519ARID
smart00185113056712127105733115610121214182523372510289ARM
smart00570100000000032012211424253105AWS
pfam021372000011200110111105143441311A_deamin
pfam009287004378743851344656775572116Adap_comp_sub
pfam028832001012101430423322144831414Alpha_adaptinC2
pfam00266600126277764154554586751397Aminotran_5
pfam0002396001116112438164066620107718811147105313160188153642539Ank
pfam00191600000000027140075001810143622169188Annexin
pfam0002526018672327141424194577761515161418283644Arf
smart0010512002336127417162654659881216144128ArfGap
pfam0141212002336127417162654659881216144128ArfGap
pfam01603100001000187121111325263816B56
smart007212000000000500444339576542525BAR
pfam0311410000000000002433211221186BAR
smart005020000000000000000005302531310BBC
smart00336190012220002981000019535665745BBOX
smart003370000000000000000001112341816BCL
pfam006530000000000001221203317108332147BIR
smart002380000000000001221103317108332148BIR
pfam00533140013347251514189114621581624123243BRCT
smart005012000110003740424214486862519BRIGHT
smart00592000000000000000000220341138BRK
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
smart0029715036912795102919514810161230424126562712362BROMO
smart0057620000100003122131232215299BTP
pfam003736000000301110000001812272223175758Band_41
pfam02138800112654366011111435656198Beach
pfam00439140369125658271751277151330404025502511456Bromodomain
smart00239380036151622162115092215151717137665111597876277230C2
pfam001683300119121310181428411412161211645497547166261223C2
smart006430000000000000000001112341615C345C
smart0026600000000000000000000336076CAD
pfam0421800000000000000000000126096CENP-B_N
smart00033400010024232915397877514070377631142127CH
pfam0567900000000000000000064846122118CHGN
smart00298900233001915152101711432211161124104439CHROMO
pfam0087800000000000000000100008122413CIMR
pfam02487100000222000011211444240168CLN3
pfam00780300000000012132332971051062520CNH
smart00036200000020112142332961051072721CNH
pfam045160000000000000022001035531810CP2
pfam0031300011273224200000065671342522CSD
smart0035700011255414200000065681352822CSP
smart000410000000000000000002183492423CT
smart00546100000001011020174221334147CUE
pfam02845000000000011020153221213107CUE
pfam023760000000000000000007674521620CUT
smart000433000000001880000003410402844CY
pfam01049000000000000000000001013322626Cadherin_C
pfam010676000003211100001007616641615Calpain_III
pfam0038530011100073214241184651041819Chromo
pfam012176004146744881533544415841411Clat_adaptor_s
pfam0459440020214222111232232034694Cnd1
pfam03712000000000200000000436551247Cu2_monoox_C
pfam000312000000000770000002310202441Cystatin
smart0002100000000000000000064225497DAX
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
smart0053720011123000000000096349101828DCX
pfam036072000000000000000006622681527DCX
pfam028624001120000200223125573741113DDHD
smart0000500000000000000000096124763630DEATH
pfam0214170000014125501220065691153831DENN
smart000497000010001130655531391068104528DEP
pfam0061050000100001305335312996764228DEP
smart000500000000000001110004467933142DISIN
pfam0077800000000000000000064225497DIX
smart0068420000000020300000022124294DM15
smart001952800331028371916191415999858432823412811089DSPc
pfam0078216003272425141315130478651917141321145451DSPc
pfam0632700000000000000000000055195DUF1053
pfam0480210001140112201111221112195DUF625
pfam058851000000001110000003454461312DUF857
smart006955001011010620211113243631312DUSP
smart00572000000000000000000216335117DZF
pfam0053100000000000000000095114733438Death
pfam069207000000000110011002573632012Ded_cyto
pfam002000000000000001110005457933141Disintegrin
pfam0231930001000031092000004432561326E2F_TDP
pfam0144800000000004000000063671021713ELM2
pfam01105400334121282125044497658612111319EMP24_GP25L
smart006150000000000000000001172461928EPH_lbd
smart00413000000000000000000131012912154538ETS
smart0047960012414129814141786661014111014112223EXOIII
pfam014040000000000000000001172461928Ephrin_lbd
pfam0017800000000000000000012912912144538Ets
pfam00754700000000000000000432269235735F5_F8_type_C
smart00231800000000000000000322259195534FA58C
pfam006675000216554322565333455641013FAD_binding_1
pfam01839000000000000000000110464917FG-GAP
smart004420000000000000000002222482930FGF
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
pfam001670000000000000000001221382830FGF
smart00339000000000000245344249181923276150FH
smart00063100000000000000000859610122929FRI
pfam01363150010217259112150625552014141820124837FYVE
smart00064150010221299113150746662115162020125140FYVE
pfam00210000000000250100000222253117Ferritin
pfam000380000000000000000007700036460Filament
pfam01770200000000000000000344232118Folate_carrier
pfam00250000000000000245344229181823276150Fork_head
pfam02434000001000000000100665441386Fringe
pfam015341000000000000000005477581616Frizzled
pfam013921000000000000000008514711133234Fz
pfam006310000000000000000005394521916G-gamma
smart00243100000000000001000517174147GAS2
pfam02187100000000000000000517174147GAS2
pfam0312700000000005500000032103296GAT
pfam02841000000000024000000001000917GBP_C
smart002623400000000530311052001213112937346789GEL
smart002240000000000000000005394532218GGL
pfam03359000000000000000000112142912GKAP
pfam02893900001142113702226493361032429GRAM
smart0056812001011431141002437563271052229GRAM
smart002771000000001330000005300051114GRAN
pfam007350000000001003778783344952818GTP_CDC
pfam027090000020000000000003322520129Galactosyl_T_2
pfam00626190021213122721036232101091613245378Gelsolin
pfam0085211000000211310000004542845116Glyco_transf_10
pfam0466600000000000000300000014437Glyco_transf_54
smart003900000000000000000007232421416GoLoco
pfam003961000000001330000004200051114Granulin
pfam0467020002114200002232232322287Gtr1_RagA
smart004715003189827450050211031981473323HDc
pfam0298510000000021100123023341113120HEAT
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
pfam0063260143101515131174277755109242121184640HECT
smart0011970255121616171474288765109262222195242HECTc
smart0039830003103051360478751713211934218480HMG
pfam0050520003100041340357751511231931166965HMG_box
pfam05622000000000000000000011342811HOOK
pfam027930000000000000000009754983030HRM
pfam022180000000000000000000007831913HS1_rep
smart00120000000000000000000305812137272HX
pfam0004500000000000000000000571093748Hemopexin
smart000080000000000000000009754893630HormR
pfam06462000000000000000000220150911Hyd_WA
smart00409000000000000000000672395108652284926220551110IG
smart00407000000000000000000010400402273IGc1
smart00406000000000000000000723028295455367IGv
pfam00478400112343334042252534133125IMPDH
smart001872000000000000001002272361314INB
pfam010070000120003000000003367741917IRK
pfam021740000000000000000001147532012IRS
smart001910000000000000000007421418286679Int_alpha
smart0055850110323341910044443141113101483533JmjC
pfam0237360120323361913065543141115121493941JmjC
pfam02149300000000126011122534232116KA1
smart0013000011101100000000043622379036KR
pfam0005100011101100000000032622358936Kringle
pfam028280000000000000000003402421113L27
smart005690000000000000000003343521918L27
pfam012730000000001200000005600021711LBP_BPI_CETP
pfam0381500066100000000210000000221310LCCL
smart0060300076100000000211100000231310LCCL
pfam047915000114233550121004443462311LMBR1
smart00082000000000000000000916422529149178LRRCT
smart00013000000000000000000411164383128LRRNT
pfam0146200000000000000000004131396LRRNT
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
smart003682000005533200000002121121210LRR_RI
smart003690000000001320000112054892016LRR_TYP
pfam0075390041388641393712741121171013142318Lactamase_B
smart002820000000200000000004741107768531199159LamG
smart005602000101401000000000021211013LamGL
smart001360000000000000010006585883019LamNT
pfam0005320000020000000000040324927514213588Laminin_EGF
pfam000550000000000000000006585883019Laminin_N
pfam0129900000000000000000000115299Lamp
pfam0006100000000001100000054413423849Lipocalin
pfam0062900001100000000000023539524226MAM
smart0013700001100000000000088339554226MAM
pfam012840000000000000000007423242517MARVEL
smart003910000000000850000002326831414MBD
smart005610000000000000000009151591695944MBT
pfam028200000000000000000005101491695541MBT
pfam01853200122464120223333546574128MOZ_SAS
pfam0099420000000023200321133142583MoCF_biosynth
pfam060177000002500110111222223541312Myosin_tail_2
pfam009562002132234780322113425531716NAP
pfam04095100102111123012111312431115NAPRTase
smart0056230022386366211111131746101518NDK
smart002270000000000000000002341439662NEBU
smart005390000000000000000008842351912NIDO
pfam017590000000000000000001112241412NTR
pfam009390000001026500121124586813156Na_sulph_symp
pfam065120000000000000000000072121910Na_trans_assoc
pfam0359320141443344311110011212569Nuclear_move
smart002840000000000000000002201282613OLF
pfam021910000000000000000002201282413OLF
pfam01237110022202041320655767466862417Oxysterol_BP
pfam01089300112221121014111224552105P5CR
smart000850000000000510000002146661317PA2c
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
pfam0156950000132207613646796061262021PAP2
smart00285400000000012802224310756942515PBD
smart000180030000000000000003211021119PD
smart001410000000000000000001121511515PDGF
smart00228000203210547151020229575124118141101437321PDZ
pfam005950001020122040000107258939411472343277PDZ
smart00233630035719261341812217141315146148666710981372324PH
pfam00169470033416207313711412111112433447527663284242PH
smart00249100167923026695312218151610593442677953168131PHD
pfam00628700536010223834116161213736223250603812187PHD
pfam05682000000000000000000540525711PHK_AB
smart001426000002200110111116442431011PI3K_C2
pfam007925000002300110111116442441111PI3K_C2
smart0014440000002100000000022212298PI3K_rbd
pfam006400000000000000000002114141615126548PID
smart0008812006778128813144111011781311141215102116PINT
pfam0173500000000000005326500000586PLA2_B
smart002500000000000000000004100431223182PLEC
smart003520000000000000000005484721828POU
smart004620000000000000000003218222125159056PTB
smart003100000000000000000001187532012PTBI
smart001591000100201020000001134441820PTX
pfam008552000012311128031022212212115229PWWP
smart002933000012323128031122212312125231PWWP
pfam0078760001136339511171112131310201518236054PX
smart0031260002137338611181014141410181517225853PX
pfam015620000000000000000001154954857Pep_M12B_propep
pfam03416400012332223011111343332138Peptidase_C54
pfam004130000000000510000004423473331Peptidase_M10
pfam039330000000001510000002223462128Peptidase_M10_N
pfam03036000000000000000000003442813Perilipin
pfam000680000000000100000002101161315Phospholip_A2_1
pfam001570000000000000000005484721828Pou
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
pfam05044000000000000000000113242104Prox1
smart003933000015320640244422302661116R3H
pfam014241000001210210313322302641115R3H
pfam00788300000000000022211241423182275241RA
pfam004151000021021011710000033114392623RCC1
pfam022570000000000000111121203341112RFX_DNA_binding
smart0031511000000000100245532518121421296348RGS
pfam005540000000000000000000073531318RHD
smart00450800002161715191913281010101018152811153326RHOD
smart003940000011111000100102223241514RIIa
smart0058240014121031041433337579881714RPR
smart0036180044662252312347837131412720134038RRM_1
smart0059320000000000000000066481162517RUN
pfam0275920000000000000000055461062821RUN
pfam0471200020144440000000000012348Radial_spoke
pfam00638200211111163133233522397189Ran_BP1
pfam0061611000000000001234333355762318RasGAP
smart00323120000100000002344343651073331RasGAP
smart003244500111111095310910121132243323362812091RhoGAP
pfam0062044001111110953107811931233322352811289RhoGAP
smart00325480100000000018555434213927533011792RhoGEF
pfam00621470100000000017654230213725462811289RhoGEF
pfam00581400002912714158287610710917893024Rhodanese
smart00454900110440575045511362520314029136125SAM
pfam005364000104001520443112419121928199191SAM
smart002512000000000000000002210510102220SAM_PNT
pfam0219810000000000000000022949101916SAM_PNT
smart00258000000000200000000432113914SAND
pfam01342000000000000000000432113914SAND
smart00178410197102429181639307891015113835403136487282SAR
smart002000000000000000000008500013018SEA
pfam013900000000000000000008400012117SEA
smart00553100101200042011111211132107SEP
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
smart00317210066164140242940221101518763726294141187459SET
pfam00017900000000000000011503249344648149149SH2
smart002521100000000010010011734753384851159160SH2
smart0032631000006106033021252428261058813186179103360332SH3
pfam00018250000051050230211821272273741107414887309285SH3
smart0025300000000000000000021441562931SOCS
pfam006228001031317887103233315323517251611780SPRY
smart004498101041923887103334315333618251712084SPRY
smart0020200022000049000000004488169155109SR
pfam0053000022000023000000002268128143100SRCR
pfam03365100000121114121122110343156STAG
pfam01369600015544276164454651251062318Sec7
pfam014030000000000000000006515714114540Sema
smart006300000000000000000009716715125144Sema
pfam0275000000000000000000021344046Synapsin_C
smart0016433001181520291311251331312111092622392538308557TBC
pfam00566300058107204923103111210872115282034236645TBC
smart0070600000000000000000000204054TECPR
smart00510100211121264112112113332108TFS2M
pfam03299000000000000000000412121107TF_AP-2
smart00204000000000000000000551679113741TGFB
pfam00019000000000000000000551679114044TGF_beta
pfam006880000000000000000000145782124TGFb_propeptide
smart004604000000001200323222244661516TGc
pfam04201000000000000000000011070137TPD52
smart00210000000010000000000721110494343TSPN
pfam0573500000000000000000000411457TSP_C
pfam022100000000000000000003283293036TSP_N
smart002110000000000000000001111121210113035TY
pfam00086000000000000000000441174102933Thyroglobulin_1
pfam06309200203464158012112320312148Torsin
pfam009270000000000000000000063412330Transglut_C
pfam018414000000000100111111113541516Transglut_core
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
pfam049060000000000000000003413601611Tweety
pfam00627300004221211703314312261162113UBA
pfam0044337001292131382020582552520223129473442375045122103UCH
pfam0117010011112102302232245412396UPF0020
pfam030063000012432861222556635561311UPF0073
pfam0461510001113114213223322033259Utp14
pfam007901000001212870544436545541716VHS
smart0028810000012221080544536545541716VHS
smart001678000111310231223224422331316VPS9
smart0021400000000000000000001761553337VWC
pfam00093000000000000000000008111163434VWC
smart002150000000000000000000050391715VWC_out
smart0021700000000000000000032524087WAP
pfam004001864541305611310470135227192261301651188789154138214220240199430395WD40
smart0032036868826810924624714124646536457233259221161162293264424398460398813702WD40
smart00456500415131779117110788738275041433111983WW
pfam0039740041210856630935662117383631209766WW
smart006787000202210100000005212521714WWE
pfam028250000200000210000005212721611WWE
pfam048933000025531431343227632351011Yip1
smart003550000000000300372142226543030ZnF_C2H2
smart004516002230021152045455636131684128ZnF_U1
smart002905003225431851701445687751416ZnF_UBP
smart0029150020243311110039322128171319123321ZnF_ZZ
smart000145000014220561453677606952322acidPPc
pfam0345520000000001001110065791033525dDENN
pfam00047000000000000000000793423111111035496319ig
pfam034565000000000000111006568943328uDENN
pfam0011000000000000000000075191314112429wnt
pfam00096000000000000012215011120166zf-C2H2
pfam0153000000000000000000022155463942zf-C2HC
pfam02008000000000000000000123143713zf-CXXC
pfam006410000000210200121220100401710zf-RanBP
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
pfam021485002115431751410335676651315zf-UBP
At least one chordate within top2:

SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
pfam00244100214242315712332242973991114-3-3
smart00101100314242315712332242973991114_3_3
pfam059020000000000000000004102207104_1_CTD
pfam0000100000000000000000017713121010313314293416847tm_1
pfam0166130020223034200210011231251512A1pp
smart0050630020322134200312211256311514A1pp
pfam00207000000000000000000438231753214A2M
smart006080000000000000000002256533648ACR
smart00268570017918132214102121413131317171314182617344437ACTIN
smart005522000011210120111115143441311ADEAMc
pfam051100000000000000000000052222332AF-4
pfam0454810000000002280000000000001310AIG1
pfam00501350017813132319115141313933611103939424642337245AMP-binding
smart0024879008121523442044757619762271412690295151190146637521ANK
smart00335500000000027160085001810183622159284ANX
smart002231000017000103000000100000812APPLE
smart001779111171022494829268754121821202620675565617674156156ARF
pfam013882000110002630323214486862519ARID
smart00185113056712127105733115610121214182523372510289ARM
pfam02807000000310000000000634471044ATP-gua_PtransN
smart00570100000000032012211424253105AWS
pfam021372000011200110111105143441311A_deamin
pfam0096250031389933204655476108186119A_deaminase
pfam0002255001181012211191920212111011141313182216314235Actin
pfam009287004378743851344656775572116Adap_comp_sub
pfam028832001012101430423322144831414Alpha_adaptinC2
pfam00266600126277764154554586751397Aminotran_5
pfam00909700000020126110454337105225307Ammonium_transp
pfam0002396001116112438164066620107718811147105313160188153642539Ank
pfam00191600000000027140075001810143622169188Annexin
pfam0002526018672327141424194577761515161418283644Arf
smart0010512002336127417162654659881216144128ArfGap
pfam0141212002336127417162654659881216144128ArfGap
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
pfam06456000000000000000000438343116Arfaptin
pfam0173100000000000000110052000047Arylesterase
pfam01603100001000187121111325263816B56
smart007212000000000500444339576542525BAR
pfam0311410000000000002433211221186BAR
smart005020000000000000000005302531310BBC
smart00336190012220002981000019535665745BBOX
smart003370000000000000000001112341816BCL
pfam006530000000000001221203317108332147BIR
smart002380000000000001221103317108332148BIR
pfam03493300000000100000000361845385BK_channel_a
pfam00533140013347251514189114621581624123243BRCT
smart005012000110003740424214486862519BRIGHT
smart00592000000000000000000220341138BRK
smart0029715036912795102919514810161230424126562712362BROMO
smart0057620000100003122131232215299BTP
pfam003736000000301110000001812272223175758Band_41
pfam02138800112654366011111435656198Beach
pfam04775000000000000000000470005411Bile_Hydr_Trans
pfam02785300113423241026344611546396Biotin_carb_C
pfam0036470021109977171105665777869101910Biotin_lipoyl
pfam00439140369125658271751277151330404025502511456Bromodomain
smart00239380036151622162115092215151717137665111597876277230C2
pfam001683300119121310181428411412161211645497547166261223C2
smart006430000000000000000001112341615C345C
pfam0141300000000000000000048366842114C4
smart0011100000000000000000048366842114C4
smart0026600000000000000000000336076CAD
pfam0421800000000000000000000126096CENP-B_N
smart00033400010024232915397877514070377631142127CH
pfam0567900000000000000000064846122118CHGN
pfam0745200000000010000000000404363CHRD
smart00298900233001915152101711432211161124104439CHROMO
SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
pfam0087800000000000000000100008122413CIMR
smart00299110055710147824518910879104911111618CLH
pfam02487100000222000011211444240168CLN3
pfam00780300000000012132332971051062520CNH
smart00036200000020112142332961051072721CNH
pfam045160000000000000022001035531810CP2
pfam0031300011273224200000065671342522CSD
smart0035700011255414200000065681352822CSP
smart000410000000000000000002183492423CT
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pfam01557300000021134011141122436574FAA_hydrolase
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pfam0317740001022214320112221029326Nucleoporin
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SpeciesDdGtCmPfChTgTbTcLmCrAtOsEcSpAnNcScCgCeCbAmAgDmCiHsMm 
pfam000770000110001135000001321471197RVP
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pfam00638200211111163133233522397189Ran_BP1
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